Rh1AG121200

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016637
Physical Location & Seq
Forward (+)
22609402 .. 22610502
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG121200.1

Sequence Viewer

Length: 1101 bp
ATGGCTATTGAGCAACATGGTGATCTAGAGTCCTTTGAGTTCTGGGAGGGATTGCCTAAATATATGAAAGATTTGGCAATTGAGCTTTACCACACAAAATGTAATATGAAAGAGACGATAGTCGTATGTCACAGTGAGCCTGGTGCATGGAACCCTCCATTGTTTGAAACTCTCCCTTGCCCACCAACTGCTTATGAAAACTTCAAGTCTGTGATTGGTCGGACCATGTTTGAAACTGATAGGGTGAGTCTCGAGCATGTAAAGCGCTGTAACAAAATGGATTATGTGTGGGTTCCTACTGGGTTTCATGTATCTACATTCATAGAAAGTGGGGTTGATCCATCTAAGGTGGTCAAAATTGTGCAGCCTATTGATGTGAAGTTCTTTGATCCAGTTGAGTATGAGCCATTAAATCTTGCTTCTATAGGGAAATTGGTCATGGGGAAGACAACACGTAACTCAAGATTTGTGTTTATGAGCATTTTTAAGTGGGAATATAGGAAAGGATGGGATGTGTTGCTGAAATCATATTTGGAAGAATACACTGCAGCAGACAGGGTTACTTTATATCTTTTAACAAATCCATATCACTCGGATAAAGATTTTAGCAATAAGATAGTGGAGTTTGTGCAGAAAGCTGGAATAGAAAAGCCAGCGACTGGTTGGGCTTCAGTTTATGTGATTGACACTCATATAGCCCAATCTGATTTGCCTCGAATATACAAGGCAGCTGATGCATTTGTTCTTCCGTCAAGAGGGGAAGGGTGGGGAAGGCCTATTGTAGAAGCTATGGCAATGTCGTTGCCAGTGATTGCCACAAATTGGTCGGGACCAACAGAGTATTTGACCGAAGAGAATAGCTATCCATTGATAGTGGATAGGATGAGTGAAGTAATGGAAGGGCCTTTCAAAGGACATCTCTGGGCAGAACCTTCTGTTACTAAGCTTCGGGTGCTAATGAGGCATGTAATGGATAATGTCGACGAAGCCAAGGCCAAAGGAAGAAGAGCAAGGGAAGACATGATCACCAAGTTTGCTCCGGAGATTGTTGCAGATACTGTTATCAAACATGTACAAAACATATTTAAAAAGATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

366

Amino Acids

41.96

Weight (kDa)

5.98

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_1_4 PF13692 155 - 287 6e-16 Glycosyl transferases group 1
Glycos_transf_1 PF00534 233 - 286 7.1e-14 Glycosyl transferases group 1
GT4-conflict PF20706 233 - 351 1e-07 Family 4 Glycosyltransferase in conflict systems
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016637)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10630
fragaria_vesca FvH4_5g28400
malus_domestica MD03G1165900.v1.1
prunus_persica Prupe.4G266300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0331951
rosa_laevigata RLG00000029701
rosa_multiflora Rmu_sc0008128.1_g000008
rosa_roxburghii Rroxscaffold_4G00318590
rosa_rugosa Rorug01G0097100
rosa_samantha Rh1AG121200 Rh1BG092800 Rh1CG116000 Rh1DG127100
rosa_wichuraiana Rw1G009890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 659, 822
AccI GTMKAC 1 cut(s) 981
AccIII TCCGGA 1 cut(s) 1039
AclWI GGATC 2 cut(s) 332, 383
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 1 cut(s) 1074
AfeI AGCGCT 1 cut(s) 266
AfiI CCNNNNNNNGG 4 cut(s) 659, 755, 822, 911
AflIII ACRYGT 2 cut(s) 452, 1069
AgsI TTSAA 4 cut(s) 167, 205, 233, 910
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 6 cut(s) 85, 638, 731, 788, 861, 946
AluI AGCT 6 cut(s) 85, 638, 731, 788, 861, 946
Alw26I GTCTC 2 cut(s) 107, 254
AlwI GGATC 2 cut(s) 332, 383
AlwNI CAGNNNCTG 2 cut(s) 659, 1058
Ama87I CYCGRG 1 cut(s) 251
Aor13HI TCCGGA 1 cut(s) 1039
Aor51HI AGCGCT 1 cut(s) 266
AoxI GGCC 3 cut(s) 773, 902, 993
ApeKI GCWGC 3 cut(s) 364, 548, 728
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 3 cut(s) 222, 830, 902
AsuHPI GGTGA 3 cut(s) 32, 256, 1018
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 2 cut(s) 222, 830
BbsI GAAGAC 2 cut(s) 452, 1023
BbvI GCAGC 3 cut(s) 376, 560, 740
BccI CCATC 3 cut(s) 349, 501, 1087
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 1023
BcoDI GTCTC 2 cut(s) 107, 254
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 2 cut(s) 423, 546
BfoI RGCGCY 1 cut(s) 268
BisI GCNGC 3 cut(s) 365, 549, 729
BlsI GCNGC 3 cut(s) 366, 550, 730
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 2 cut(s) 222, 830
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 3 cut(s) 222, 830, 902
BmiI GGNNCC 3 cut(s) 152, 294, 831
BmrFI CCNGG 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 724
BmuI ACTGGG 1 cut(s) 309
BoxI GACNNNNGTC 1 cut(s) 119
BpiI GAAGAC 2 cut(s) 452, 1023
BpuEI CTTGAG 1 cut(s) 445
BsaAI YACGTR 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 990
BsaWI WCCGGW 1 cut(s) 1039
Bsc4I CCNNNNNNNGG 4 cut(s) 659, 755, 822, 911
Bse1I ACTGG 4 cut(s) 304, 392, 664, 806
Bse3DI GCAATG 1 cut(s) 801
BseAI TCCGGA 1 cut(s) 1039
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 990
BseGI GGATG 3 cut(s) 512, 517, 888
BseLI CCNNNNNNNGG 4 cut(s) 659, 755, 822, 911
BseMI GCAATG 1 cut(s) 801
BseNI ACTGG 4 cut(s) 304, 392, 664, 806
BseXI GCAGC 3 cut(s) 376, 560, 740
BsgI GTGCAG 2 cut(s) 383, 650
BshFI GGCC 3 cut(s) 775, 904, 995
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 1 cut(s) 1040
BslFI GGGAC 1 cut(s) 843
BslI CCNNNNNNNGG 4 cut(s) 659, 755, 822, 911
BsmAI GTCTC 2 cut(s) 107, 254
BsmBI CGTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 843
BsnI GGCC 3 cut(s) 775, 904, 995
BsoBI CYCGRG 1 cut(s) 251
Bsp13I TCCGGA 1 cut(s) 1039
Bsp1407I TGTACA 1 cut(s) 1072
Bsp143I GATC 4 cut(s) 22, 337, 388, 1023
BspANI GGCC 3 cut(s) 775, 904, 995
BspEI TCCGGA 1 cut(s) 1039
BspLI GGNNCC 3 cut(s) 152, 294, 831
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 2 cut(s) 332, 383
BspQI GCTCTTC 1 cut(s) 1000
BsrDI GCAATG 1 cut(s) 801
BsrGI TGTACA 1 cut(s) 1072
BsrI ACTGG 4 cut(s) 304, 392, 664, 806
BssECI CCNNGG 1 cut(s) 990
BssMI GATC 4 cut(s) 22, 337, 388, 1023
BssT1I CCWWGG 1 cut(s) 990
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 134, 1060
Bst6I CTCTTC 2 cut(s) 846, 1000
BstAPI GCANNNNNTGC 1 cut(s) 734
BstAUI TGTACA 1 cut(s) 1072
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 2 cut(s) 345, 942
BstENI CCTNNNNNAGG 1 cut(s) 909
BstF5I GGATG 3 cut(s) 512, 517, 888
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 4 cut(s) 25, 340, 391, 1026
BstMAI GTCTC 2 cut(s) 107, 254
BstMBI GATC 4 cut(s) 22, 337, 388, 1023
BstMWI GCNNNNNNNGC 4 cut(s) 262, 734, 952, 961
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 3 cut(s) 260, 968, 1073
BstPAI GACNNNNGTC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 2 cut(s) 423, 546
BstV1I GCAGC 3 cut(s) 376, 560, 740
BstV2I GAAGAC 2 cut(s) 452, 1023
BsuRI GGCC 3 cut(s) 775, 904, 995
BtsCI GGATG 3 cut(s) 512, 517, 888
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 3 cut(s) 139, 543, 813
Cac8I GCNNGC 1 cut(s) 654
CaiI CAGNNNCTG 2 cut(s) 659, 1058
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 3 cut(s) 222, 830, 902
Csp6I GTAC 1 cut(s) 1073
CviAII CATG 9 cut(s) 17, 147, 226, 257, 308, 439, 965, 1021, 1070
CviQI GTAC 1 cut(s) 1073
DdeI CTNAG 2 cut(s) 345, 942
DpnI GATC 4 cut(s) 24, 339, 390, 1025
DpnII GATC 4 cut(s) 22, 337, 388, 1023
DraI TTTAAA 1 cut(s) 1087
Eam1104I CTCTTC 2 cut(s) 846, 1000
EarI CTCTTC 2 cut(s) 846, 1000
Eco130I CCWWGG 1 cut(s) 990
Eco147I AGGCCT 1 cut(s) 775
Eco47I GGWCC 2 cut(s) 222, 830
Eco47III AGCGCT 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 654
Eco88I CYCGRG 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoO109I RGGNCCY 1 cut(s) 902
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 990
EcoT22I ATGCAT 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 990
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 9 cut(s) 20, 150, 229, 260, 311, 442, 968, 1024, 1073
FaqI GGGAC 1 cut(s) 843
FatI CATG 9 cut(s) 16, 146, 225, 256, 307, 438, 964, 1020, 1069
FbaI TGATCA 1 cut(s) 1023
FblI GTMKAC 1 cut(s) 981
Fnu4HI GCNGC 3 cut(s) 365, 549, 729
FokI GGATG 3 cut(s) 519, 524, 895
Fsp4HI GCNGC 3 cut(s) 365, 549, 729
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 266
GluI GCNGC 3 cut(s) 365, 549, 729
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 3 cut(s) 775, 904, 995
HapII CCGG 1 cut(s) 1040
HhaI GCGC 1 cut(s) 267
Hin1II CATG 9 cut(s) 20, 150, 229, 260, 311, 442, 968, 1024, 1073
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HincII GTYRAC 1 cut(s) 982
HindII GTYRAC 1 cut(s) 982
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 2 cut(s) 29, 247
HpaII CCGG 1 cut(s) 1040
HphI GGTGA 3 cut(s) 32, 256, 1018
Hpy166II GTNNAC 1 cut(s) 982
Hpy188I TCNGA 3 cut(s) 222, 595, 706
Hpy188III TCNNGA 6 cut(s) 26, 251, 462, 753, 828, 1040
Hpy8I GTNNAC 1 cut(s) 982
Hpy99I CGWCG 1 cut(s) 986
HpyAV CCTTC 4 cut(s) 755, 765, 893, 942
HpyCH4III ACNGT 2 cut(s) 134, 1060
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 6 cut(s) 146, 364, 548, 631, 737, 1052
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 734, 952, 961
HpyF3I CTNAG 2 cut(s) 345, 942
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 9 cut(s) 20, 150, 229, 260, 311, 442, 968, 1024, 1073
HspAI GCGC 1 cut(s) 265
Kpn2I TCCGGA 1 cut(s) 1039
Ksp22I TGATCA 1 cut(s) 1023
Kzo9I GATC 4 cut(s) 22, 337, 388, 1023
LguI GCTCTTC 1 cut(s) 1000
LmnI GCTCC 1 cut(s) 1042
Lsp1109I GCAGC 3 cut(s) 376, 560, 740
LweI GCATC 1 cut(s) 724
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 5 cut(s) 128, 269, 455, 559, 937
MalI GATC 4 cut(s) 24, 339, 390, 1025
MboI GATC 4 cut(s) 22, 337, 388, 1023
MboII GAAGA 7 cut(s) 457, 548, 737, 863, 1014, 1017, 1028
MfeI CAATTG 1 cut(s) 78
MluCI AATT 4 cut(s) 78, 357, 431, 820
MlyI GAGTC 2 cut(s) 38, 256
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 5 cut(s) 40, 165, 723, 749, 954
Mph1103I ATGCAT 1 cut(s) 739
MroI TCCGGA 1 cut(s) 1039
MseI TTAA 5 cut(s) 410, 486, 575, 1086, 1099
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 1 cut(s) 1040
MspR9I CCNGG 1 cut(s) 141
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 262, 734, 952, 961
NdeII GATC 4 cut(s) 22, 337, 388, 1023
NlaIII CATG 9 cut(s) 20, 150, 229, 260, 311, 442, 968, 1024, 1073
NlaIV GGNNCC 3 cut(s) 152, 294, 831
NmuCI GTSAC 1 cut(s) 128
NsiI ATGCAT 1 cut(s) 739
NspI RCATGY 3 cut(s) 260, 968, 1073
PaeR7I CTCGAG 1 cut(s) 251
PceI AGGCCT 1 cut(s) 775
PciI ACATGT 1 cut(s) 1069
PciSI GCTCTTC 1 cut(s) 1000
PflMI CCANNNNNTGG 2 cut(s) 659, 822
PkrI GCNGC 3 cut(s) 366, 550, 730
PleI GAGTC 2 cut(s) 37, 255
PpsI GAGTC 2 cut(s) 37, 255
Ppu21I YACGTR 1 cut(s) 455
PscI ACATGT 1 cut(s) 1069
PshAI GACNNNNGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 3 cut(s) 152, 294, 831
PspPI GGNCC 3 cut(s) 222, 830, 902
PstI CTGCAG 1 cut(s) 550
PstNI CAGNNNCTG 2 cut(s) 659, 1058
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 1 cut(s) 1074
RsaNI GTAC 1 cut(s) 1073
SalI GTCGAC 1 cut(s) 980
SapI GCTCTTC 1 cut(s) 1000
SaqAI TTAA 5 cut(s) 410, 486, 575, 1086, 1099
SatI GCNGC 3 cut(s) 365, 549, 729
Sau3AI GATC 4 cut(s) 22, 337, 388, 1023
Sau96I GGNCC 3 cut(s) 222, 830, 902
SchI GAGTC 2 cut(s) 38, 256
ScrFI CCNGG 1 cut(s) 141
SetI ASST 9 cut(s) 87, 351, 457, 640, 733, 790, 863, 934, 948
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 2 cut(s) 423, 546
Sfr274I CTCGAG 1 cut(s) 251
SinI GGWCC 2 cut(s) 222, 830
SlaI CTCGAG 1 cut(s) 251
SmlI CTYRAG 2 cut(s) 251, 460
SmoI CTYRAG 2 cut(s) 251, 460
Sse9I AATT 4 cut(s) 78, 357, 431, 820
SseBI AGGCCT 1 cut(s) 775
SspMI CTAG 1 cut(s) 26
StuI AGGCCT 1 cut(s) 775
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 990
TaaI ACNGT 2 cut(s) 134, 1060
TaiI ACGT 1 cut(s) 457
TaqI TCGA 3 cut(s) 252, 715, 981
TaqII GACCGA 1 cut(s) 863
TasI AATT 4 cut(s) 78, 357, 431, 820
TatI WGTACW 1 cut(s) 1072
Tru1I TTAA 5 cut(s) 410, 486, 575, 1086, 1099
Tru9I TTAA 5 cut(s) 410, 486, 575, 1086, 1099
TscAI CASTG 3 cut(s) 139, 550, 813
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 3 cut(s) 364, 548, 728
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 5 cut(s) 80, 122, 210, 296, 310
TspGWI ACGGA 1 cut(s) 738
TspRI CASTG 3 cut(s) 139, 550, 813
Van91I CCANNNNNTGG 2 cut(s) 659, 822
VpaK11BI GGWCC 2 cut(s) 222, 830
XagI CCTNNNNNAGG 1 cut(s) 909
XbaI TCTAGA 1 cut(s) 25
XceI RCATGY 3 cut(s) 260, 968, 1073
XcmI CCANNNNNNNNNTGG 1 cut(s) 660
XhoI CTCGAG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 981
XspI CTAG 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.