Rw1G009890

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016637
Physical Location & Seq
Forward (+)
21958472 .. 21959960
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009890.1

Sequence Viewer

Length: 1416 bp
ATGGATTCACAGGAGAACCAACAATCCATTAACCAACCACAACCCCATCCAACTCACTCCTTCAACTTCAAATTGAAATCATCTGTATTCTACGTCTCCTCCATCCTAATTCTCGTCCTCGCCGTCTCATTCATACACATTCTCATTACATCCCACCTTGTTTCAACTCTTCTAGAGTTTATTCACCCTTCCAAGAAAACCATACAAACCCAAGAGCCTGAACCCATTTCGCTTCCCCTCAACTGTGTCCTGTGGATGGCTCCTTTTCTCTCGGGTGGTGGGTACAGTTCAGAAGGTTGGTCGTATATTTTAGCACTCTATGAACAGAATAGAACCCGCAGTTTTAGAATGGCTATTGAGCAACATGGTGATCTAGAGTCCTTTGAGTTCTGGGAGGGATTGCCTAAATATATGAAAGATTTGGCAATTGAGCTTTACCACACAAAATGTAATATGAAAGAGACGATAGTCATATGTCACAGTGAGCCTGGTGCATGGAACCCTCCATTGTTTGAAACTCTCCCTTGCCCACCAGCTGCTTATGAAAACTTCAAGTCTGGTGAGTCTCGAACATGTAAGCGCTGTAACAAAATGGATTATGTGTGGGTTCCTACTGGGTTTCATGTATCTACATTCATAGAAAGTGGGGTTGATCCATCTAAGGTGGTCAAAATTGTGCAGCCTATTGATGTGAAGTTCTTTGATCCAGTTGAGTATGAGCCATTAAATCTTGCTTCTATAGGGAAATTGGTCATGGGGAAGACAACACGTAACTCAAAATTTGTGTTTATGAGCATTTTTAAGTGGGAATATAGGAAAGGATGGGACGTGTTACTGAAATCATATTTGGAAGAATACACTGCAGCAGACAGGGTTACTTTATATCTTTTAACAAATCCATATCACTCGGATAAAGATTTTAGCAATAAGATAGTGGAGTTTGTGCAGAGAGCTGGAATAGAAAAACCAGTGACTGGTTGGGCCCCAGTTTATGTGATTGACACTCATATAGCCCAATCTGATTTGCCTCGAATATATAAGGCAGCTGATGCATTTGTTCTTCCGTCAAGAGGGGAAGGGTGGGGAAGGCCTATTGTAGAAGCTATGGCAATGTCGTTGCCAGTGATTGCCACAAATTGGTCGGGACCAACAGAGTATTTGACCGAAGAGAATAGCTATCCATTGATAGTGGATAGGATGAGTGAAGTAATGGAAGGGCCTTTCAAAGGACATCTCTGGGCAGAACCTTCTGTTACTAAGCTTCGGGTGCTAATGAGGCATGTAATGGATAATGTCGACGAAGCCAAGGCCAAAGGAAGAAGAGCAAGGGAAGACATGATCACCAAGTTTGCTCCGGAGATTGTTGCAGATATTGTTATCAAACATGTACAAAACATATTTAAAAAGATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

471

Amino Acids

53.85

Weight (kDa)

6.3

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_1_4 PF13692 260 - 392 6.6e-16 Glycosyl transferases group 1
Glycos_transf_1 PF00534 339 - 391 1.3e-13 Glycosyl transferases group 1
GT4-conflict PF20706 339 - 450 2.9e-07 Family 4 Glycosyltransferase in conflict systems
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016637)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10630
fragaria_vesca FvH4_5g28400
malus_domestica MD03G1165900.v1.1
prunus_persica Prupe.4G266300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0331951
rosa_laevigata RLG00000029701
rosa_multiflora Rmu_sc0008128.1_g000008
rosa_roxburghii Rroxscaffold_4G00318590
rosa_rugosa Rorug01G0097100
rosa_samantha Rh1AG121200 Rh1BG092800 Rh1CG116000 Rh1DG127100
rosa_wichuraiana Rw1G009890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 974, 1137
AccI GTMKAC 1 cut(s) 1296
AccIII TCCGGA 1 cut(s) 1354
AciI CCGC 1 cut(s) 337
AclWI GGATC 2 cut(s) 647, 698
AcsI RAATTY 1 cut(s) 779
AfaI GTAC 2 cut(s) 284, 1389
AfeI AGCGCT 1 cut(s) 581
AfiI CCNNNNNNNGG 5 cut(s) 256, 974, 1070, 1137, 1226
AflIII ACRYGT 4 cut(s) 572, 767, 828, 1384
AgsI TTSAA 7 cut(s) 64, 70, 76, 165, 515, 553, 1225
AjiI CACGTC 1 cut(s) 829
AjnI CCWGG 1 cut(s) 487
AjuI GAANNNNNNNTTGG 2 cut(s) 830, 862
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 7 cut(s) 433, 536, 953, 1046, 1103, 1176, 1261
AluI AGCT 7 cut(s) 433, 536, 953, 1046, 1103, 1176, 1261
Alw26I GTCTC 4 cut(s) 100, 130, 455, 570
AlwI GGATC 2 cut(s) 647, 698
AlwNI CAGNNNCTG 1 cut(s) 974
Ama87I CYCGRG 1 cut(s) 271
Aor13HI TCCGGA 1 cut(s) 1354
Aor51HI AGCGCT 1 cut(s) 581
AoxI GGCC 4 cut(s) 981, 1088, 1217, 1308
ApaI GGGCCC 1 cut(s) 985
ApeKI GCWGC 4 cut(s) 536, 679, 863, 1043
ApoI RAATTY 1 cut(s) 779
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 4 cut(s) 981, 982, 1145, 1217
AsuHPI GGTGA 4 cut(s) 176, 380, 572, 1333
AvaI CYCGRG 1 cut(s) 271
AvaII GGWCC 1 cut(s) 1145
BaeGI GKGCMC 1 cut(s) 985
BanII GRGCYC 1 cut(s) 985
BbsI GAAGAC 2 cut(s) 767, 1338
BbvI GCAGC 4 cut(s) 523, 691, 875, 1055
BccI CCATC 6 cut(s) 54, 110, 250, 664, 816, 1402
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 489
BclI TGATCA 1 cut(s) 1338
BcoDI GTCTC 4 cut(s) 100, 130, 455, 570
BfaI CTAG 2 cut(s) 173, 374
BfmI CTRYAG 2 cut(s) 738, 861
BfoI RGCGCY 1 cut(s) 583
BisI GCNGC 4 cut(s) 537, 680, 864, 1044
BlsI GCNGC 4 cut(s) 538, 681, 865, 1045
Bme1390I CCNGG 1 cut(s) 489
Bme18I GGWCC 1 cut(s) 1145
BmeT110I CYCGRG 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 829
BmgT120I GGNCC 4 cut(s) 981, 982, 1145, 1217
BmiI GGNNCC 6 cut(s) 261, 500, 609, 983, 984, 1146
BmrFI CCNGG 1 cut(s) 489
BmrI ACTGGG 2 cut(s) 624, 980
BmsI GCATC 1 cut(s) 1039
BmuI ACTGGG 2 cut(s) 624, 980
BoxI GACNNNNGTC 1 cut(s) 467
BpiI GAAGAC 2 cut(s) 767, 1338
BsaAI YACGTR 1 cut(s) 770
BsaJI CCNNGG 1 cut(s) 1305
BsaWI WCCGGW 1 cut(s) 1354
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 5 cut(s) 256, 974, 1070, 1137, 1226
Bse1I ACTGG 6 cut(s) 619, 707, 968, 979, 986, 1121
Bse3DI GCAATG 1 cut(s) 1116
BseAI TCCGGA 1 cut(s) 1354
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 1305
BseGI GGATG 6 cut(s) 46, 102, 149, 261, 827, 1203
BseLI CCNNNNNNNGG 5 cut(s) 256, 974, 1070, 1137, 1226
BseMI GCAATG 1 cut(s) 1116
BseNI ACTGG 6 cut(s) 619, 707, 968, 979, 986, 1121
BseRI GAGGAG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 985
BseXI GCAGC 4 cut(s) 523, 691, 875, 1055
BsgI GTGCAG 2 cut(s) 698, 965
BshFI GGCC 4 cut(s) 983, 1090, 1219, 1310
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 1 cut(s) 1355
BslFI GGGAC 2 cut(s) 839, 1158
BslI CCNNNNNNNGG 5 cut(s) 256, 974, 1070, 1137, 1226
BsmAI GTCTC 4 cut(s) 100, 130, 455, 570
BsmBI CGTCTC 3 cut(s) 100, 130, 455
BsmFI GGGAC 2 cut(s) 839, 1158
BsnI GGCC 4 cut(s) 983, 1090, 1219, 1310
BsoBI CYCGRG 1 cut(s) 271
Bsp120I GGGCCC 1 cut(s) 981
Bsp1286I GDGCHC 1 cut(s) 985
Bsp13I TCCGGA 1 cut(s) 1354
Bsp1407I TGTACA 1 cut(s) 1387
Bsp143I GATC 4 cut(s) 370, 652, 703, 1338
BspACI CCGC 1 cut(s) 337
BspANI GGCC 4 cut(s) 983, 1090, 1219, 1310
BspEI TCCGGA 1 cut(s) 1354
BspLI GGNNCC 6 cut(s) 261, 500, 609, 983, 984, 1146
BspMAI CTGCAG 1 cut(s) 865
BspPI GGATC 2 cut(s) 647, 698
BspQI GCTCTTC 1 cut(s) 1315
BsrDI GCAATG 1 cut(s) 1116
BsrGI TGTACA 1 cut(s) 1387
BsrI ACTGG 6 cut(s) 619, 707, 968, 979, 986, 1121
BssECI CCNNGG 1 cut(s) 1305
BssMI GATC 4 cut(s) 370, 652, 703, 1338
BssT1I CCWWGG 1 cut(s) 1305
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 3 cut(s) 245, 287, 482
Bst6I CTCTTC 3 cut(s) 174, 1161, 1315
BstAPI GCANNNNNTGC 1 cut(s) 1049
BstAUI TGTACA 1 cut(s) 1387
BstBAI YACGTR 1 cut(s) 770
BstDEI CTNAG 2 cut(s) 660, 1257
BstENI CCTNNNNNAGG 1 cut(s) 1224
BstF5I GGATG 6 cut(s) 46, 102, 149, 261, 827, 1203
BstH2I RGCGCY 1 cut(s) 583
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 4 cut(s) 373, 655, 706, 1341
BstMAI GTCTC 4 cut(s) 100, 130, 455, 570
BstMBI GATC 4 cut(s) 370, 652, 703, 1338
BstMWI GCNNNNNNNGC 3 cut(s) 1049, 1267, 1276
BstNI CCWGG 1 cut(s) 489
BstNSI RCATGY 3 cut(s) 576, 1283, 1388
BstPAI GACNNNNGTC 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 2 cut(s) 738, 861
BstSLI GKGCMC 1 cut(s) 985
BstV1I GCAGC 4 cut(s) 523, 691, 875, 1055
BstV2I GAAGAC 2 cut(s) 767, 1338
BsuRI GGCC 4 cut(s) 983, 1090, 1219, 1310
BtrI CACGTC 1 cut(s) 829
BtsCI GGATG 6 cut(s) 46, 102, 149, 261, 827, 1203
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 4 cut(s) 487, 858, 975, 1128
CaiI CAGNNNCTG 1 cut(s) 974
CfoI GCGC 1 cut(s) 582
Cfr13I GGNCC 4 cut(s) 981, 982, 1145, 1217
Csp6I GTAC 2 cut(s) 283, 1388
CviAII CATG 8 cut(s) 365, 495, 573, 623, 754, 1280, 1336, 1385
CviQI GTAC 2 cut(s) 283, 1388
DdeI CTNAG 2 cut(s) 660, 1257
DpnI GATC 4 cut(s) 372, 654, 705, 1340
DpnII GATC 4 cut(s) 370, 652, 703, 1338
DraI TTTAAA 1 cut(s) 1402
Eam1104I CTCTTC 3 cut(s) 174, 1161, 1315
EarI CTCTTC 3 cut(s) 174, 1161, 1315
Eco130I CCWWGG 1 cut(s) 1305
Eco147I AGGCCT 1 cut(s) 1090
Eco24I GRGCYC 1 cut(s) 985
Eco47I GGWCC 1 cut(s) 1145
Eco47III AGCGCT 1 cut(s) 581
Eco88I CYCGRG 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 1224
EcoO109I RGGNCCY 2 cut(s) 982, 1217
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 1305
EcoT22I ATGCAT 1 cut(s) 1054
EcoT38I GRGCYC 1 cut(s) 985
ErhI CCWWGG 1 cut(s) 1305
Esp3I CGTCTC 3 cut(s) 100, 130, 455
FaeI CATG 8 cut(s) 368, 498, 576, 626, 757, 1283, 1339, 1388
FaqI GGGAC 2 cut(s) 839, 1158
FatI CATG 8 cut(s) 364, 494, 572, 622, 753, 1279, 1335, 1384
FauI CCCGC 1 cut(s) 344
FauNDI CATATG 1 cut(s) 473
FbaI TGATCA 1 cut(s) 1338
FblI GTMKAC 1 cut(s) 1296
Fnu4HI GCNGC 4 cut(s) 537, 680, 864, 1044
FokI GGATG 6 cut(s) 33, 89, 136, 268, 834, 1210
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 4 cut(s) 537, 680, 864, 1044
FspBI CTAG 2 cut(s) 173, 374
GlaI GCGC 1 cut(s) 581
GluI GCNGC 4 cut(s) 537, 680, 864, 1044
HaeII RGCGCY 1 cut(s) 583
HaeIII GGCC 4 cut(s) 983, 1090, 1219, 1310
HapII CCGG 1 cut(s) 1355
HhaI GCGC 1 cut(s) 582
Hin1II CATG 8 cut(s) 368, 498, 576, 626, 757, 1283, 1339, 1388
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HincII GTYRAC 1 cut(s) 1297
HindII GTYRAC 1 cut(s) 1297
HindIII AAGCTT 1 cut(s) 1259
HinfI GANTC 3 cut(s) 5, 377, 563
HpaII CCGG 1 cut(s) 1355
HphI GGTGA 4 cut(s) 176, 380, 572, 1333
Hpy166II GTNNAC 1 cut(s) 1297
Hpy188I TCNGA 3 cut(s) 292, 910, 1021
Hpy188III TCNNGA 6 cut(s) 173, 374, 567, 1068, 1143, 1355
Hpy8I GTNNAC 1 cut(s) 1297
Hpy99I CGWCG 1 cut(s) 1301
HpyAV CCTTC 7 cut(s) 70, 198, 287, 1070, 1080, 1208, 1257
HpyCH4III ACNGT 3 cut(s) 245, 287, 482
HpyCH4IV ACGT 3 cut(s) 93, 769, 828
HpyCH4V TGCA 6 cut(s) 494, 679, 863, 946, 1052, 1367
HpyF10VI GCNNNNNNNGC 3 cut(s) 1049, 1267, 1276
HpyF3I CTNAG 2 cut(s) 660, 1257
HpySE526I ACGT 3 cut(s) 93, 769, 828
Hsp92II CATG 8 cut(s) 368, 498, 576, 626, 757, 1283, 1339, 1388
HspAI GCGC 1 cut(s) 580
Kpn2I TCCGGA 1 cut(s) 1354
Ksp22I TGATCA 1 cut(s) 1338
Kzo9I GATC 4 cut(s) 370, 652, 703, 1338
LguI GCTCTTC 1 cut(s) 1315
LmnI GCTCC 2 cut(s) 265, 1357
Lsp1109I GCAGC 4 cut(s) 523, 691, 875, 1055
LweI GCATC 1 cut(s) 1039
MaeI CTAG 2 cut(s) 173, 374
MaeII ACGT 3 cut(s) 93, 769, 828
MaeIII GTNAC 7 cut(s) 476, 584, 770, 831, 874, 970, 1252
MalI GATC 4 cut(s) 372, 654, 705, 1340
MboI GATC 4 cut(s) 370, 652, 703, 1338
MboII GAAGA 8 cut(s) 161, 772, 863, 1052, 1178, 1329, 1332, 1343
MfeI CAATTG 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 985
MluCI AATT 7 cut(s) 71, 108, 426, 672, 746, 779, 1135
MlyI GAGTC 2 cut(s) 386, 572
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 8 cut(s) 109, 128, 248, 388, 513, 1038, 1064, 1269
Mph1103I ATGCAT 1 cut(s) 1054
MroI TCCGGA 1 cut(s) 1354
MseI TTAA 6 cut(s) 30, 725, 801, 890, 1401, 1414
MspA1I CMGCKG 2 cut(s) 536, 1046
MspI CCGG 1 cut(s) 1355
MspR9I CCNGG 1 cut(s) 489
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 489
MwoI GCNNNNNNNGC 3 cut(s) 1049, 1267, 1276
NdeI CATATG 1 cut(s) 473
NdeII GATC 4 cut(s) 370, 652, 703, 1338
NlaIII CATG 8 cut(s) 368, 498, 576, 626, 757, 1283, 1339, 1388
NlaIV GGNNCC 6 cut(s) 261, 500, 609, 983, 984, 1146
NmuCI GTSAC 2 cut(s) 476, 970
NsiI ATGCAT 1 cut(s) 1054
NspI RCATGY 3 cut(s) 576, 1283, 1388
PceI AGGCCT 1 cut(s) 1090
PciI ACATGT 2 cut(s) 572, 1384
PciSI GCTCTTC 1 cut(s) 1315
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 5
PflMI CCANNNNNTGG 2 cut(s) 974, 1137
PkrI GCNGC 4 cut(s) 538, 681, 865, 1045
PleI GAGTC 2 cut(s) 385, 571
PpsI GAGTC 2 cut(s) 385, 571
Ppu21I YACGTR 1 cut(s) 770
PscI ACATGT 2 cut(s) 572, 1384
PshAI GACNNNNGTC 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 6 cut(s) 261, 500, 609, 983, 984, 1146
PspOMI GGGCCC 1 cut(s) 981
PspPI GGNCC 4 cut(s) 981, 982, 1145, 1217
PstI CTGCAG 1 cut(s) 865
PstNI CAGNNNCTG 1 cut(s) 974
PvuII CAGCTG 2 cut(s) 536, 1046
RsaI GTAC 2 cut(s) 284, 1389
RsaNI GTAC 2 cut(s) 283, 1388
SalI GTCGAC 1 cut(s) 1295
SapI GCTCTTC 1 cut(s) 1315
SaqAI TTAA 6 cut(s) 30, 725, 801, 890, 1401, 1414
SatI GCNGC 4 cut(s) 537, 680, 864, 1044
Sau3AI GATC 4 cut(s) 370, 652, 703, 1338
Sau96I GGNCC 4 cut(s) 981, 982, 1145, 1217
SchI GAGTC 2 cut(s) 386, 572
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 1 cut(s) 985
SfaNI GCATC 1 cut(s) 1039
SfcI CTRYAG 2 cut(s) 738, 861
SinI GGWCC 1 cut(s) 1145
Sse9I AATT 7 cut(s) 71, 108, 426, 672, 746, 779, 1135
SseBI AGGCCT 1 cut(s) 1090
SsiI CCGC 1 cut(s) 337
SspMI CTAG 2 cut(s) 173, 374
StuI AGGCCT 1 cut(s) 1090
StyD4I CCNGG 1 cut(s) 487
StyI CCWWGG 1 cut(s) 1305
TaaI ACNGT 3 cut(s) 245, 287, 482
TaiI ACGT 3 cut(s) 96, 772, 831
TaqI TCGA 3 cut(s) 568, 1030, 1296
TaqII GACCGA 1 cut(s) 1178
TasI AATT 7 cut(s) 71, 108, 426, 672, 746, 779, 1135
TatI WGTACW 1 cut(s) 1387
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 6 cut(s) 30, 725, 801, 890, 1401, 1414
Tru9I TTAA 6 cut(s) 30, 725, 801, 890, 1401, 1414
TscAI CASTG 4 cut(s) 487, 865, 975, 1128
TseFI GTSAC 2 cut(s) 476, 970
TseI GCWGC 4 cut(s) 536, 679, 863, 1043
Tsp45I GTSAC 2 cut(s) 476, 970
TspDTI ATGAA 7 cut(s) 121, 336, 428, 470, 558, 611, 625
TspGWI ACGGA 1 cut(s) 1053
TspRI CASTG 4 cut(s) 487, 865, 975, 1128
Van91I CCANNNNNTGG 2 cut(s) 974, 1137
VpaK11BI GGWCC 1 cut(s) 1145
XagI CCTNNNNNAGG 1 cut(s) 1224
XapI RAATTY 1 cut(s) 779
XbaI TCTAGA 2 cut(s) 172, 373
XceI RCATGY 3 cut(s) 576, 1283, 1388
XcmI CCANNNNNNNNNTGG 1 cut(s) 975
XmiI GTMKAC 1 cut(s) 1296
XspI CTAG 2 cut(s) 173, 374
Zsp2I ATGCAT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.