AT3G14170

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013133
Physical Location & Seq
Reverse (-)
4695886 .. 4698153
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14170.2

Sequence Viewer

Length: 1518 bp
ATGGCTTCTCTTACGCCAAGAGTGTTAATCAAGTTACTCGAGACGATGAACACCAACATCAAGGTACGAGGGGAATATAGGTCTGTTCTATTGCAGGTAATCAGCATTGTCCCTGCTTTAGCTGGCTCGGAGCTTTGGCCAAACCAAGGCTTTTTCATCAAAGTCTCAGATTCTTCTCACTCCACATATGTCTCATTGAGCAACGAAGACAACGAACTTATCTTGAACAACAAACTGGGAATAGGACAATTCTTCTACGTTGATAAGCTTGATGCTGGGACACCTGTTCCTGTATTGGTGGGAGTTAGACCGATCTCTGGACGCCATCCTTTTGTAGGAAATCCCAAAGATTTGATGCAGATGTTGGTACCAAGTGAGACAACACCTCGGGAAGAAGAATATCACAACCAGAAGAAGAAAGATGGTGCAAGATCAAACATAGTGGAGAATATAAGAAAACATCAACCTTTTGTAATCAAGGAAGAGAAGACAGGTGTGGCTTCACGTTATATGAAGGGTATTTCAAATTCAAAGGCAAGTGGATCAGACTCAAGTAGTGGGGGTAGCAACAATGAGGGTGAGACTGGATCGATAATGGTGGCTAAGAAAGTTGGTGTATTGGCTAAAGGGAAACAAAGGGAGCACAAAGATCAGGCACGTCAAGCTGGTCCTTTACAATGTCGGCCTGCGACAGCTCCAACAAAGGCAGAGCCAAAGAAACTCTCTTTGAGCTCCACTGTGAACTACATAAACAGGAAGAGTAATTCTGCTGAGGATGCATCATGGAGCTCTCTGCCTGTTAGTCTATCAAAATTGGGTAAAGGAATGCTGAGAAGGAGAAATTTAGCTGCTCTCATAGCCGCAGAAGTGCAAAGAGAGGCATTGGCTGCTTCACATCTCATCAAATGCATCAGTATGTTTGCTGAACTCAGCTCAAATGCTTCACCAAAGAATCCACATACCTCTCTCAGAAACTTCTTCACCCTCCAGAGTATCCTTGACCAAGTACAGGTTACAGTTGTAGCATCGAAAGATAAATCATTCCAACCGGTGAATATTCATTCGTTATGGATGGAACCTGAAAAGTTGAGCAAAAAAGCTAGTCTATCTTCAAGCAGAGCCACAATGAAGCCTTCAAAAGCTCTAACAGAAGCCGAAAAGCTAGAATGGGTTAAGGGAAATGGCACAGAAGAAATAAAAGAACTGACAAACACTTTGAAACGAGAAACAAGAAGCTGGTTTTTGAAATTCTTGGAAGATGCATTAGATACTGGATTACATGCTACTGTTCCGGAGAAGAAAGGAAAAACCAAAGGAGCGCGACTAGCGGAACCAGATAATCATATTGCCGAGACTTTATCCCAACTTAAGCAAGCAAACGAATGGCTGGAAAAAGTTAAAAATGACAATCTCTCTAGTGATAATTCTTTGTTAGAGAATATAGAACGATTGAAGAAGAAAATATATTCTTGCTTGCTACTTTATGTGGATTCAGCTGCATCAGCTATTGGAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

505

Amino Acids

55.6

Weight (kDa)

9.54

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 4 - 119 2.8e-49 Plant protein of unknown function (DUF936)
DUF6857 PF21647 252 - 341 1e-22 Domain of unknown function (DUF6857)
DUF6857 PF21647 363 - 503 1.1e-31 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14170 AT3G14170
fragaria_vesca FvH4_6g35250
malus_domestica MD09G1177200.v1.1 MD17G1149100.v1.1
prunus_persica Prupe.3G036500_v2.0.a1 Prupe.3G036500_v2.0.a1
pyrus_communis pycom09g09540
rosa_chinensis RchiOBHm_Chr2g0146611
rosa_laevigata RLG00000020210
rosa_multiflora Rmu_sc0001986.1_g000031
rosa_roxburghii Rroxscaffold_2G00100010
rosa_rugosa Rorug02G0395700
rosa_samantha Rh2AG451900 Rh2BG464700 Rh2CG438800 Rh2DG473700
rosa_wichuraiana Rw2G036920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 85
Acc65I GGTACC 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 367
AccII CGCG 1 cut(s) 1321
AccIII TCCGGA 1 cut(s) 1291
AciI CCGC 2 cut(s) 861, 1328
AclWI GGATC 2 cut(s) 550, 595
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 3 cut(s) 526, 841, 1247
AcyI GRCGYC 1 cut(s) 322
AfaI GTAC 3 cut(s) 66, 369, 1008
AfiI CCNNNNNNNGG 4 cut(s) 146, 317, 335, 1009
AflII CTTAAG 1 cut(s) 1367
AgeI ACCGGT 1 cut(s) 1048
AgsI TTSAA 8 cut(s) 226, 525, 531, 1113, 1137, 1219, 1246, 1453
AjiI CACGTC 1 cut(s) 659
Alw21I GWGCWC 3 cut(s) 645, 734, 791
Alw26I GTCTC 6 cut(s) 35, 169, 196, 371, 575, 1346
AlwI GGATC 2 cut(s) 550, 595
Ama87I CYCGRG 2 cut(s) 38, 387
Aor13HI TCCGGA 1 cut(s) 1291
AoxI GGCC 2 cut(s) 137, 683
ApeKI GCWGC 3 cut(s) 848, 887, 1496
ApoI RAATTY 3 cut(s) 526, 841, 1247
ArsI GACNNNNNNTTYG 2 cut(s) 1198, 1230
AsiGI ACCGGT 1 cut(s) 1048
Asp718I GGTACC 1 cut(s) 367
AspLEI GCGC 1 cut(s) 1321
AspS9I GGNCC 1 cut(s) 668
AsuHPI GGTGA 4 cut(s) 590, 936, 973, 1063
AvaI CYCGRG 2 cut(s) 38, 387
AvaII GGWCC 1 cut(s) 668
BalI TGGCCA 1 cut(s) 139
BanI GGYRCC 1 cut(s) 367
BanII GRGCYC 2 cut(s) 734, 791
BbsI GAAGAC 2 cut(s) 213, 494
Bbv12I GWGCWC 3 cut(s) 645, 734, 791
BbvCI CCTCAGC 1 cut(s) 771
BbvI GCAGC 3 cut(s) 835, 874, 1483
BccI CCATC 3 cut(s) 333, 416, 1066
BciVI GTATCC 1 cut(s) 1004
BcoDI GTCTC 6 cut(s) 35, 169, 196, 371, 575, 1346
BfaI CTAG 4 cut(s) 1101, 1163, 1325, 1416
BfrI CTTAAG 1 cut(s) 1367
BfuAI ACCTGC 1 cut(s) 85
BfuI GTATCC 1 cut(s) 1004
BisI GCNGC 4 cut(s) 849, 861, 888, 1497
BlsI GCNGC 4 cut(s) 850, 862, 889, 1498
Bme18I GGWCC 1 cut(s) 668
BmeT110I CYCGRG 2 cut(s) 38, 387
BmgBI CACGTC 1 cut(s) 659
BmgT120I GGNCC 1 cut(s) 668
BmiI GGNNCC 3 cut(s) 369, 1077, 1332
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 8 cut(s) 262, 345, 766, 788, 918, 1034, 1249, 1508
BmuI ACTGGG 1 cut(s) 245
BpiI GAAGAC 2 cut(s) 213, 494
BpmI CTGGAG 1 cut(s) 971
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 535
Bsa29I ATCGAT 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 145, 386
BsaWI WCCGGW 2 cut(s) 1048, 1291
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 317, 335, 1009
Bse118I RCCGGY 1 cut(s) 1048
Bse1I ACTGG 3 cut(s) 240, 589, 1276
BseAI TCCGGA 1 cut(s) 1291
BseCI ATCGAT 1 cut(s) 590
BseDI CCNNGG 2 cut(s) 145, 386
BseGI GGATG 3 cut(s) 325, 781, 1077
BseLI CCNNNNNNNGG 4 cut(s) 146, 317, 335, 1009
BseMII CTCAG 5 cut(s) 180, 762, 821, 943, 982
BseNI ACTGG 3 cut(s) 240, 589, 1276
BseXI GCAGC 3 cut(s) 835, 874, 1483
BseYI CCCAGC 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 1321
BshFI GGCC 2 cut(s) 139, 685
BshNI GGYRCC 1 cut(s) 367
BshTI ACCGGT 1 cut(s) 1048
BshVI ATCGAT 1 cut(s) 590
BsiHKAI GWGCWC 3 cut(s) 645, 734, 791
BsiHKCI CYCGRG 2 cut(s) 38, 387
BsiSI CCGG 2 cut(s) 1049, 1292
BslFI GGGAC 2 cut(s) 95, 292
BslI CCNNNNNNNGG 4 cut(s) 146, 317, 335, 1009
BsmAI GTCTC 6 cut(s) 35, 169, 196, 371, 575, 1346
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 95, 292
BsmI GAATGC 1 cut(s) 831
BsnI GGCC 2 cut(s) 139, 685
BsoBI CYCGRG 2 cut(s) 38, 387
Bsp1286I GDGCHC 3 cut(s) 645, 734, 791
Bsp13I TCCGGA 1 cut(s) 1291
Bsp143I GATC 5 cut(s) 312, 431, 542, 587, 649
BspACI CCGC 2 cut(s) 861, 1328
BspANI GGCC 2 cut(s) 139, 685
BspCNI CTCAG 5 cut(s) 179, 763, 822, 942, 981
BspDI ATCGAT 1 cut(s) 590
BspEI TCCGGA 1 cut(s) 1291
BspFNI CGCG 1 cut(s) 1321
BspLI GGNNCC 3 cut(s) 369, 1077, 1332
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 2 cut(s) 550, 595
BspT107I GGYRCC 1 cut(s) 367
BspTI CTTAAG 1 cut(s) 1367
BsrFI RCCGGY 1 cut(s) 1048
BsrI ACTGG 3 cut(s) 240, 589, 1276
BssAI RCCGGY 1 cut(s) 1048
BssECI CCNNGG 2 cut(s) 145, 386
BssMI GATC 5 cut(s) 312, 431, 542, 587, 649
BssNI GRCGYC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 3 cut(s) 739, 1018, 1288
Bst6I CTCTTC 2 cut(s) 477, 752
BstACI GRCGYC 1 cut(s) 322
BstAFI CTTAAG 1 cut(s) 1367
BstAPI GCANNNNNTGC 1 cut(s) 887
BstC8I GCNNGC 4 cut(s) 124, 687, 1374, 1475
BstDEI CTNAG 6 cut(s) 166, 603, 771, 830, 929, 968
BstENI CCTNNNNNAGG 1 cut(s) 333
BstF5I GGATG 3 cut(s) 325, 781, 1077
BstFNI CGCG 1 cut(s) 1321
BstHHI GCGC 1 cut(s) 1321
BstKTI GATC 5 cut(s) 315, 434, 545, 590, 652
BstMAI GTCTC 6 cut(s) 35, 169, 196, 371, 575, 1346
BstMBI GATC 5 cut(s) 312, 431, 542, 587, 649
BstMWI GCNNNNNNNGC 6 cut(s) 662, 776, 857, 887, 1325, 1502
BstNSI RCATGY 1 cut(s) 1283
BstUI CGCG 1 cut(s) 1321
BstV1I GCAGC 3 cut(s) 835, 874, 1483
BstV2I GAAGAC 2 cut(s) 213, 494
Bsu15I ATCGAT 1 cut(s) 590
BsuI GTATCC 1 cut(s) 1004
BsuRI GGCC 2 cut(s) 139, 685
BsuTUI ATCGAT 1 cut(s) 590
BtrI CACGTC 1 cut(s) 659
BtsCI GGATG 3 cut(s) 325, 781, 1077
BtsIMutI CAGTG 1 cut(s) 735
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 4 cut(s) 124, 687, 1374, 1475
CfoI GCGC 1 cut(s) 1321
Cfr10I RCCGGY 1 cut(s) 1048
Cfr13I GGNCC 1 cut(s) 668
ClaI ATCGAT 1 cut(s) 590
CseI GACGC 1 cut(s) 330
Csp6I GTAC 3 cut(s) 65, 368, 1007
CspAI ACCGGT 1 cut(s) 1048
CspCI CAANNNNNGTGG 2 cut(s) 423, 458
CviAII CATG 2 cut(s) 783, 1280
CviQI GTAC 3 cut(s) 65, 368, 1007
DdeI CTNAG 6 cut(s) 166, 603, 771, 830, 929, 968
DpnI GATC 5 cut(s) 314, 433, 544, 589, 651
DpnII GATC 5 cut(s) 312, 431, 542, 587, 649
EaeI YGGCCR 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 477, 752
EarI CTCTTC 2 cut(s) 477, 752
Ecl136II GAGCTC 2 cut(s) 732, 789
Eco130I CCWWGG 1 cut(s) 145
Eco24I GRGCYC 2 cut(s) 734, 791
Eco47I GGWCC 1 cut(s) 668
Eco53kI GAGCTC 2 cut(s) 732, 789
Eco88I CYCGRG 2 cut(s) 38, 387
EcoICRI GAGCTC 2 cut(s) 732, 789
EcoNI CCTNNNNNAGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 145
EcoT22I ATGCAT 3 cut(s) 781, 911, 1264
EcoT38I GRGCYC 2 cut(s) 734, 791
ErhI CCWWGG 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 2 cut(s) 786, 1283
FaqI GGGAC 2 cut(s) 95, 292
FatI CATG 2 cut(s) 782, 1279
FauNDI CATATG 1 cut(s) 187
Fnu4HI GCNGC 4 cut(s) 849, 861, 888, 1497
FokI GGATG 3 cut(s) 312, 788, 1084
FriOI GRGCYC 2 cut(s) 734, 791
Fsp4HI GCNGC 4 cut(s) 849, 861, 888, 1497
FspBI CTAG 4 cut(s) 1101, 1163, 1325, 1416
GlaI GCGC 1 cut(s) 1320
GluI GCNGC 4 cut(s) 849, 861, 888, 1497
GsaI CCCAGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 971
HaeIII GGCC 2 cut(s) 139, 685
HapII CCGG 2 cut(s) 1049, 1292
HgaI GACGC 1 cut(s) 330
HhaI GCGC 1 cut(s) 1321
Hin1I GRCGYC 1 cut(s) 322
Hin1II CATG 2 cut(s) 786, 1283
Hin6I GCGC 1 cut(s) 1319
HinP1I GCGC 1 cut(s) 1319
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 4 cut(s) 170, 548, 952, 1490
HpaII CCGG 2 cut(s) 1049, 1292
HphI GGTGA 4 cut(s) 590, 936, 973, 1063
Hpy166II GTNNAC 1 cut(s) 742
Hpy188I TCNGA 4 cut(s) 130, 169, 547, 971
Hpy188III TCNNGA 6 cut(s) 40, 223, 318, 389, 988, 1292
Hpy8I GTNNAC 1 cut(s) 742
HpyAV CCTTC 3 cut(s) 508, 828, 1143
HpyCH4III ACNGT 3 cut(s) 739, 1018, 1288
HpyCH4IV ACGT 3 cut(s) 258, 505, 658
HpyCH4V TGCA 8 cut(s) 94, 358, 428, 779, 871, 909, 1262, 1499
HpyF10VI GCNNNNNNNGC 6 cut(s) 662, 776, 857, 887, 1325, 1502
HpyF3I CTNAG 6 cut(s) 166, 603, 771, 830, 929, 968
HpySE526I ACGT 3 cut(s) 258, 505, 658
Hsp92I GRCGYC 1 cut(s) 322
Hsp92II CATG 2 cut(s) 786, 1283
HspAI GCGC 1 cut(s) 1319
Kpn2I TCCGGA 1 cut(s) 1291
KpnI GGTACC 1 cut(s) 371
Kzo9I GATC 5 cut(s) 312, 431, 542, 587, 649
LmnI GCTCC 6 cut(s) 130, 640, 700, 737, 786, 1316
Lsp1109I GCAGC 3 cut(s) 835, 874, 1483
LweI GCATC 8 cut(s) 262, 345, 766, 788, 918, 1034, 1249, 1508
MaeI CTAG 4 cut(s) 1101, 1163, 1325, 1416
MaeII ACGT 3 cut(s) 258, 505, 658
MaeIII GTNAC 2 cut(s) 33, 1012
MalI GATC 5 cut(s) 314, 433, 544, 589, 651
MboI GATC 5 cut(s) 312, 431, 542, 587, 649
MhlI GDGCHC 3 cut(s) 645, 734, 791
MlsI TGGCCA 1 cut(s) 139
MluCI AATT 7 cut(s) 248, 526, 763, 812, 841, 1247, 1423
MluNI TGGCCA 1 cut(s) 139
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 2 cut(s) 722, 1069
MnlI CCTC 7 cut(s) 62, 396, 568, 766, 871, 973, 995
Mox20I TGGCCA 1 cut(s) 139
Mph1103I ATGCAT 3 cut(s) 781, 911, 1264
MroI TCCGGA 1 cut(s) 1291
MscI TGGCCA 1 cut(s) 139
MseI TTAA 4 cut(s) 26, 1173, 1368, 1398
MslI CAYNNNNRTG 1 cut(s) 914
Msp20I TGGCCA 1 cut(s) 139
MspA1I CMGCKG 1 cut(s) 1496
MspCI CTTAAG 1 cut(s) 1367
MspI CCGG 2 cut(s) 1049, 1292
Mva1269I GAATGC 1 cut(s) 831
MvnI CGCG 1 cut(s) 1321
MwoI GCNNNNNNNGC 6 cut(s) 662, 776, 857, 887, 1325, 1502
NdeI CATATG 1 cut(s) 187
NdeII GATC 5 cut(s) 312, 431, 542, 587, 649
NlaIII CATG 2 cut(s) 786, 1283
NlaIV GGNNCC 3 cut(s) 369, 1077, 1332
NmeAIII GCCGAG 1 cut(s) 1375
NsiI ATGCAT 3 cut(s) 781, 911, 1264
NspI RCATGY 1 cut(s) 1283
PaeR7I CTCGAG 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 831
PfeI GAWTC 3 cut(s) 170, 952, 1490
PinAI ACCGGT 1 cut(s) 1048
PkrI GCNGC 4 cut(s) 850, 862, 889, 1498
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
Psp124BI GAGCTC 2 cut(s) 734, 791
PspFI CCCAGC 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 369, 1077, 1332
PspPI GGNCC 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 1496
RsaI GTAC 3 cut(s) 66, 369, 1008
RsaNI GTAC 3 cut(s) 65, 368, 1007
RseI CAYNNNNRTG 1 cut(s) 914
SacI GAGCTC 2 cut(s) 734, 791
SaqAI TTAA 4 cut(s) 26, 1173, 1368, 1398
SatI GCNGC 4 cut(s) 849, 861, 888, 1497
Sau3AI GATC 5 cut(s) 312, 431, 542, 587, 649
Sau96I GGNCC 1 cut(s) 668
SchI GAGTC 1 cut(s) 542
SduI GDGCHC 3 cut(s) 645, 734, 791
SfaNI GCATC 8 cut(s) 262, 345, 766, 788, 918, 1034, 1249, 1508
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 1 cut(s) 668
SlaI CTCGAG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 914
SmlI CTYRAG 3 cut(s) 38, 550, 1367
SmoI CTYRAG 3 cut(s) 38, 550, 1367
Sse9I AATT 7 cut(s) 248, 526, 763, 812, 841, 1247, 1423
SsiI CCGC 2 cut(s) 861, 1328
SspI AATATT 1 cut(s) 1057
SspMI CTAG 4 cut(s) 1101, 1163, 1325, 1416
SstI GAGCTC 2 cut(s) 734, 791
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 3 cut(s) 739, 1018, 1288
TaiI ACGT 3 cut(s) 261, 508, 661
TaqI TCGA 3 cut(s) 39, 590, 1028
TaqII GACCGA 1 cut(s) 325
TasI AATT 7 cut(s) 248, 526, 763, 812, 841, 1247, 1423
TatI WGTACW 1 cut(s) 1006
TauI GCSGC 1 cut(s) 863
TfiI GAWTC 3 cut(s) 170, 952, 1490
Tru1I TTAA 4 cut(s) 26, 1173, 1368, 1398
Tru9I TTAA 4 cut(s) 26, 1173, 1368, 1398
TscAI CASTG 1 cut(s) 742
TseI GCWGC 3 cut(s) 848, 887, 1496
TspDTI ATGAA 5 cut(s) 62, 145, 527, 1049, 1142
TspRI CASTG 1 cut(s) 742
Vha464I CTTAAG 1 cut(s) 1367
VpaK11BI GGWCC 1 cut(s) 668
XagI CCTNNNNNAGG 1 cut(s) 333
XapI RAATTY 3 cut(s) 526, 841, 1247
XceI RCATGY 1 cut(s) 1283
XhoI CTCGAG 1 cut(s) 38
XspI CTAG 4 cut(s) 1101, 1163, 1325, 1416
Zsp2I ATGCAT 3 cut(s) 781, 911, 1264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.