RLG00000020210

Plant protein of unknown function (DUF936)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
62461438 .. 62463279
1842 bp
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UTR
Exon/CDS
Intron
RLM00000020210

Sequence Viewer

Length: 1230 bp
ATGGTGGAGCCATCAGAGGGTCCAGTCCAAGCTGATGATTATGCAGGAAGCAATAGTTTGAAATCAAGGGAGTCCTCCGATGCCAAAGAAGAAACCTCAAGACAAAAGATTGTTATTAAAGAGGAAAAGGCAGCTGTTGCATCTAGGTATATGCAAGGTTTTTCGACATCAAATTCAAAAGCTAACTCACAAGATTCTAGTGGAGGTGGGAAGCACAATGATAATGAGAGTGGTGGTAAGAAGCAGGTTGGCATGATAAAAGGCAAACAGCAAGAGCTTAATGGTCAGGCACGCTCGATAACTCCTTCCCACAGCAGAGCTGGTGCACTTTCATTAAAGCCAGAAGCAGCTGTATCGAACACCAAGGACACTGCTGTGCCTTCTAAGAGAACTTCTGCAAAACGTGCTTCAATCATACAGGAAAACATAAATCTTAACTGTTTGTCAATCCGGAAAGAGAAAAGTCTTCCACCAGAAGTAGCTTTGTGGGGTTCTCTGCCAGCCAACTTATTGAAGCCTGGAAAGGGAATGCTTAGAAGGCGAAATATAGCTTCTTTGGTTGCAGCAGAAGCTCAGAAAGAAGCATCTAGAGCTGCAACTCTTGTCAAATGTCTCAGTACGTTTGCCGATCTATGCTCATCTGCCTCACCAGACAATCCCCACCTCTCACTCACCAAGTTTTTCAGACTCCACCAACTCATTGACCAACCAAATATTGCAGCTCCCTTAAAGGATAAATTAACTCCTTTAACTACAAAACAACTGCCTCCAGATATGGAAAAGTTGAGCAAAAGGACGGGCACAATTCATGGTCAAAGTGCATTGAAGTCTCCAAAGCTCCCCATCGAGTTAAGTGAAGCAGAGAAACTAGAATGGGCTAAAGGAGACGGTGCAAAAGGGATTGCAGAACTACGAGAACTTCTCTTAGATGAAACAAGGTCTTGGTTCTTGAAATTCTTGGAGGCAGCACTAGATGCTGGTGGCTTTCATCTGAATGCACTAGAGAAGAAAGGCAAGGACGGTGCAGTTCGACGGACTGAGCCAGATAACCATATTGCTGTGACATTATCACAGCTGAAAAGTTCAAATGAGTGGTTGGATAAACTGAAAACTAGTCTAAGCTCAGAGAGCAGTGAATTGGTGGAGACTGTTGACAGATTGAAACAAAAAGTATATGCTTGTTTACTTGTTCATGTGGAGTCTGCTGCTTCAGCTCTCGAAAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

410

Amino Acids

44.32

Weight (kDa)

9.3

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6857 PF21647 161 - 241 6.1e-22 Domain of unknown function (DUF6857)
DUF6857 PF21647 259 - 406 1.3e-30 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013133)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccIII TCCGGA 1 cut(s) 450
AcsI RAATTY 2 cut(s) 172, 953
AcuI CTGAAG 1 cut(s) 1194
AfaI GTAC 1 cut(s) 619
AfiI CCNNNNNNNGG 2 cut(s) 17, 524
AgsI TTSAA 8 cut(s) 61, 177, 411, 514, 826, 952, 1086, 1162
AhlI ACTAGT 1 cut(s) 1112
AjnI CCWGG 1 cut(s) 517
AleI CACNNNNGTG 1 cut(s) 374
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 4 cut(s) 617, 834, 879, 1139
Alw44I GTGCAC 1 cut(s) 324
Aor13HI TCCGGA 1 cut(s) 450
ApaLI GTGCAC 1 cut(s) 324
ApeKI GCWGC 7 cut(s) 131, 347, 563, 593, 719, 965, 1205
ApoI RAATTY 2 cut(s) 172, 953
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 639, 664
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 2 cut(s) 328, 803
BbsI GAAGAC 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 7 cut(s) 143, 359, 575, 580, 731, 977, 1192
BccI CCATC 2 cut(s) 19, 851
BcgI CGANNNNNNTGC 2 cut(s) 336, 370
BciT130I CCWGG 1 cut(s) 519
BcoDI GTCTC 4 cut(s) 617, 834, 879, 1139
BcuI ACTAGT 1 cut(s) 1112
BfaI CTAG 7 cut(s) 144, 198, 588, 869, 971, 1001, 1113
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 7 cut(s) 132, 348, 564, 594, 720, 966, 1206
BlsI GCNGC 7 cut(s) 133, 349, 565, 595, 721, 967, 1207
Bme1390I CCNGG 1 cut(s) 519
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 9, 21
BmrFI CCNGG 1 cut(s) 519
BmsI GCATC 4 cut(s) 70, 149, 593, 964
BpiI GAAGAC 1 cut(s) 458
BplI GAGNNNNNCTC 2 cut(s) 906, 938
BpmI CTGGAG 1 cut(s) 753
BpuEI CTTGAG 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 450
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 524
Bse1I ACTGG 1 cut(s) 23
BseAI TCCGGA 1 cut(s) 450
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 363
BseLI CCNNNNNNNGG 2 cut(s) 17, 524
BseMII CTCAG 4 cut(s) 587, 628, 1029, 1137
BseNI ACTGG 1 cut(s) 23
BseSI GKGCMC 2 cut(s) 328, 803
BseXI GCAGC 7 cut(s) 143, 359, 575, 580, 731, 977, 1192
BsgI GTGCAG 1 cut(s) 1044
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 451
BslI CCNNNNNNNGG 2 cut(s) 17, 524
BsmAI GTCTC 4 cut(s) 617, 834, 879, 1139
BsmBI CGTCTC 1 cut(s) 879
BsmI GAATGC 2 cut(s) 534, 1000
Bsp1286I GDGCHC 2 cut(s) 328, 803
Bsp13I TCCGGA 1 cut(s) 450
Bsp143I GATC 1 cut(s) 628
BspCNI CTCAG 4 cut(s) 586, 627, 1030, 1136
BspEI TCCGGA 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 9, 21
BspMI ACCTGC 1 cut(s) 235
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 1 cut(s) 628
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 4 cut(s) 440, 890, 1022, 1150
BstAPI GCANNNNNTGC 3 cut(s) 137, 404, 974
BstC8I GCNNGC 2 cut(s) 292, 501
BstDEI CTNAG 8 cut(s) 384, 533, 573, 614, 925, 1038, 1118, 1123
BstKTI GATC 1 cut(s) 631
BstMAI GTCTC 4 cut(s) 617, 834, 879, 1139
BstMBI GATC 1 cut(s) 628
BstMWI GCNNNNNNNGC 8 cut(s) 137, 404, 538, 569, 590, 974, 1128, 1211
BstNI CCWGG 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 517
BstSLI GKGCMC 2 cut(s) 328, 803
BstV1I GCAGC 7 cut(s) 143, 359, 575, 580, 731, 977, 1192
BstV2I GAAGAC 1 cut(s) 458
BtsI GCAGTG 2 cut(s) 369, 1138
BtsIMutI CAGTG 2 cut(s) 369, 1138
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 292, 501
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 618
CviAII CATG 3 cut(s) 253, 809, 1193
CviQI GTAC 1 cut(s) 618
DdeI CTNAG 8 cut(s) 384, 533, 573, 614, 925, 1038, 1118, 1123
DpnI GATC 1 cut(s) 630
DpnII GATC 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 1194
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 879
FaeI CATG 3 cut(s) 256, 812, 1196
FatI CATG 3 cut(s) 252, 808, 1192
Fnu4HI GCNGC 7 cut(s) 132, 348, 564, 594, 720, 966, 1206
Fsp4HI GCNGC 7 cut(s) 132, 348, 564, 594, 720, 966, 1206
FspBI CTAG 7 cut(s) 144, 198, 588, 869, 971, 1001, 1113
GluI GCNGC 7 cut(s) 132, 348, 564, 594, 720, 966, 1206
GsuI CTGGAG 1 cut(s) 753
HapII CCGG 1 cut(s) 451
Hin1II CATG 3 cut(s) 256, 812, 1196
HincII GTYRAC 1 cut(s) 1153
HindII GTYRAC 1 cut(s) 1153
HinfI GANTC 4 cut(s) 71, 194, 687, 1199
HpaII CCGG 1 cut(s) 451
HphI GGTGA 2 cut(s) 639, 664
Hpy166II GTNNAC 3 cut(s) 326, 1153, 1184
Hpy188I TCNGA 6 cut(s) 16, 79, 576, 686, 993, 1126
Hpy188III TCNNGA 6 cut(s) 99, 451, 588, 770, 949, 1217
Hpy8I GTNNAC 3 cut(s) 326, 1153, 1184
Hpy99I CGWCG 1 cut(s) 1035
HpyAV CCTTC 3 cut(s) 315, 390, 531
HpyCH4III ACNGT 4 cut(s) 440, 890, 1022, 1150
HpyCH4IV ACGT 2 cut(s) 403, 620
HpyF10VI GCNNNNNNNGC 8 cut(s) 137, 404, 538, 569, 590, 974, 1128, 1211
HpyF3I CTNAG 8 cut(s) 384, 533, 573, 614, 925, 1038, 1118, 1123
HpySE526I ACGT 2 cut(s) 403, 620
Hsp92II CATG 3 cut(s) 256, 812, 1196
Kpn2I TCCGGA 1 cut(s) 450
Kzo9I GATC 1 cut(s) 628
LmnI GCTCC 3 cut(s) 7, 727, 843
Lsp1109I GCAGC 7 cut(s) 143, 359, 575, 580, 731, 977, 1192
LweI GCATC 4 cut(s) 70, 149, 593, 964
MaeI CTAG 7 cut(s) 144, 198, 588, 869, 971, 1001, 1113
MaeII ACGT 2 cut(s) 403, 620
MaeIII GTNAC 1 cut(s) 1060
MalI GATC 1 cut(s) 630
MboI GATC 1 cut(s) 628
MboII GAAGA 3 cut(s) 101, 458, 1018
MhlI GDGCHC 2 cut(s) 328, 803
MluCI AATT 5 cut(s) 172, 737, 804, 953, 1136
MlyI GAGTC 3 cut(s) 80, 681, 1208
MmeI TCCRAC 1 cut(s) 1077
MnlI CCTC 9 cut(s) 10, 85, 106, 115, 197, 655, 674, 777, 955
MroI TCCGGA 1 cut(s) 450
MseI TTAA 8 cut(s) 117, 279, 335, 435, 728, 740, 749, 851
MslI CAYNNNNRTG 2 cut(s) 374, 993
MspA1I CMGCKG 3 cut(s) 134, 350, 1075
MspI CCGG 1 cut(s) 451
MspR9I CCNGG 1 cut(s) 519
Mva1269I GAATGC 2 cut(s) 534, 1000
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 8 cut(s) 137, 404, 538, 569, 590, 974, 1128, 1211
NdeII GATC 1 cut(s) 628
NlaIII CATG 3 cut(s) 256, 812, 1196
NlaIV GGNNCC 2 cut(s) 9, 21
NmuCI GTSAC 1 cut(s) 1060
OliI CACNNNNGTG 1 cut(s) 374
PctI GAATGC 2 cut(s) 534, 1000
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 7 cut(s) 133, 349, 565, 595, 721, 967, 1207
PleI GAGTC 3 cut(s) 79, 681, 1207
PpsI GAGTC 3 cut(s) 79, 681, 1207
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 2 cut(s) 9, 21
PspPI GGNCC 1 cut(s) 20
PvuII CAGCTG 3 cut(s) 134, 350, 1075
RsaI GTAC 1 cut(s) 619
RsaNI GTAC 1 cut(s) 618
RseI CAYNNNNRTG 2 cut(s) 374, 993
SaqAI TTAA 8 cut(s) 117, 279, 335, 435, 728, 740, 749, 851
SatI GCNGC 7 cut(s) 132, 348, 564, 594, 720, 966, 1206
Sau3AI GATC 1 cut(s) 628
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 3 cut(s) 80, 681, 1208
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 2 cut(s) 328, 803
SfaNI GCATC 4 cut(s) 70, 149, 593, 964
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 2 cut(s) 374, 993
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
SpeI ACTAGT 1 cut(s) 1112
Sse9I AATT 5 cut(s) 172, 737, 804, 953, 1136
SspI AATATT 1 cut(s) 715
SspMI CTAG 7 cut(s) 144, 198, 588, 869, 971, 1001, 1113
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 4 cut(s) 440, 890, 1022, 1150
TaiI ACGT 2 cut(s) 406, 623
TaqI TCGA 6 cut(s) 164, 296, 356, 846, 1030, 1218
TasI AATT 5 cut(s) 172, 737, 804, 953, 1136
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 8 cut(s) 117, 279, 335, 435, 728, 740, 749, 851
Tru9I TTAA 8 cut(s) 117, 279, 335, 435, 728, 740, 749, 851
TscAI CASTG 2 cut(s) 376, 1138
TseFI GTSAC 1 cut(s) 1060
TseI GCWGC 7 cut(s) 131, 347, 563, 593, 719, 965, 1205
Tsp45I GTSAC 1 cut(s) 1060
TspDTI ATGAA 5 cut(s) 321, 797, 945, 977, 1181
TspGWI ACGGA 1 cut(s) 1048
TspRI CASTG 2 cut(s) 376, 1138
VneI GTGCAC 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 2 cut(s) 172, 953
XbaI TCTAGA 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XspI CTAG 7 cut(s) 144, 198, 588, 869, 971, 1001, 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.