Rh2CG438800

Plant protein of unknown function (DUF936)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
59585765 .. 59589583
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG438800.1

Sequence Viewer

Length: 1725 bp
ATGCAGAGAAGTCTTTGTTTGATTTCATTGAAGATCCTCTTCAATCTTTGTAGTGCAATTTTCTCTTGGCTTTTTAAGTCTTTATGCTCCCAATTTCAGGTACAGTTTCTCAAATTTGGATTACAAGAACAAGAAGAAAAAGTAATGGCCTCCCTTACACCAGGAGTACTACTAAAGCTTCTTCAGAGCATGAACTCGAACATAAAGGTTCGTGGAGAATATCGGTCAGTCTTGCTACAAGTGATTAGCATTGTCCCTGCATTGAGTGGCTCAGAACTTTGGCCTAATCAAGGCTTCTTTGTAAAAGTCTCGGATTCTTCGCATTCGACTTATGTCTCCCTCTCAAAGGAGGACAGTGAGCTTATATTGAACAATAAGTTGCAGCTTGGCCAGTTCTTCTATGTTGATAGAGTGGAGGCAGGAACACCAGTTCCCATTCTTGAAGGGGTCAGGCCAGTTCCCGGACGACACCCTTTTGTGGGGAACCCGAAGGATTTGATGCAAATGGTGGAGCCATCAGAGGGTTCAGTCCAAGCTGATGATCATGCAGGAAGCAAATCAAGGGAGTCCTCCGATGCTAAAGAAGAAACCTCGAGACAAAAGATTGTTATTAAAGAGGAAAAGGCAGCTGTTGCATCTAGGTATATGCAAGGTTTTTCGACATTAAATTTAAAAGCTAACTCACAAGATTCTAGTGGAGGTGGGAAGCACAATGATAATGAGAGTGGTGGTAAGAAGCAGGTTGGCATGATAAAAGGCAAACAGCAAGAGCTTAATGGTCAGGCACGCTCGATAACTCCTTCCCACAGCAGAGCTGGTGCACTTTCATTAAAGCCAGAAGCAGCTGTATCGAACACCAAGGAGACTGCTGTGCCTTCTAAGAGAACTTCTGCAAAACGTGCTTCAATCATACAGGAAAACATAAATCTTAACTGTTTGTCAGTCCGGAAAGAGAAAAGTCTTCCACCAGAAGTAGCTTTGTGGGGTTCTCTGCCAGCTAACTTATTGAAGCCTGGAAAGGGAATGCTTAGAAGGCGAAATATAGCTTCTTTGGTTGCAGCAGAAGCTCAGAAAGAAGCATCTAGAGCTGCAACTCTTGTCAAATGTCTCAGTACGTTTGCCGATCTATGCTCATCTGCCTCACCAGACAATCCCCACCTCTCACTCACCAAGTTTTTCAGACTCTACCAACTCATTGACCAACCAAATATTGCACCTCCCTTAAAGGATAAATTAACTCCTTTAACTACAAAACAACTGCCTCCAGACATCGAAAAGTTGAGCAAAAGGACGGGCACAATTCATGGTCAAAGTGCATTGAAGTCTCCAAAGCTCCCCATCGAGTTAAGTGAAGCAGAGAAACTGGAATGGGCTAAAGGAGACAGTGCAAAAGGGATTGCAGAACTACGAGAACTTCTCTTAGATGAAACAAGGTCTTGGTTCTTGAAATTCTTGGAGGCAGCACTAGATGCTGGTGGCTTTCATCTGAATACACAAGAGAAGAAAGGCAAGGACAGTGCAGCGCGACGGAGTGAGCCAGACAACCATATTGCTGTGACATTATCACAGCTGAAAAGTTCAAATGAGTGGTTGGATAAACTGAAAACTAGTCTAAGCTCAGAGAGCAGTGAATTGGTGGAGACTGTTGACAGATTGAAACAAAAAGTATATGCTTGTTTACTTGTCCATGTGGAGTCTGCTGCTTCAGCTCTCGAAAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

574

Amino Acids

62.98

Weight (kDa)

9.24

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 52 - 167 2e-53 Plant protein of unknown function (DUF936)
DUF6857 PF21647 326 - 402 2.4e-21 Domain of unknown function (DUF6857)
DUF6857 PF21647 427 - 571 2.1e-30 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013133)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 730
AccII CGCG 1 cut(s) 1525
AccIII TCCGGA 1 cut(s) 945
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 3 cut(s) 113, 667, 1448
AcuI CTGAAG 2 cut(s) 167, 1689
AfaI GTAC 3 cut(s) 102, 168, 1114
AfiI CCNNNNNNNGG 8 cut(s) 97, 290, 346, 461, 478, 479, 521, 1019
AhlI ACTAGT 1 cut(s) 1607
AjnI CCWGG 2 cut(s) 160, 1012
AloI GAACNNNNNNTCC 4 cut(s) 414, 415, 446, 447
Alw21I GWGCWC 1 cut(s) 823
Alw26I GTCTC 8 cut(s) 313, 340, 589, 857, 1112, 1329, 1374, 1634
Alw44I GTGCAC 1 cut(s) 819
AlwI GGATC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 592
Aor13HI TCCGGA 1 cut(s) 945
AoxI GGCC 4 cut(s) 147, 281, 388, 452
ApaLI GTGCAC 1 cut(s) 819
ApeKI GCWGC 8 cut(s) 382, 626, 842, 1058, 1088, 1460, 1520, 1700
ApoI RAATTY 3 cut(s) 113, 667, 1448
AspLEI GCGC 1 cut(s) 1525
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 1134, 1159
AvaI CYCGRG 1 cut(s) 592
BaeGI GKGCMC 2 cut(s) 823, 1298
BalI TGGCCA 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 953
Bbv12I GWGCWC 1 cut(s) 823
BbvI GCAGC 8 cut(s) 394, 638, 854, 1070, 1075, 1472, 1532, 1687
BccI CCATC 2 cut(s) 523, 1346
BcgI CGANNNNNNTGC 2 cut(s) 831, 865
BciT130I CCWGG 2 cut(s) 162, 1014
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 8 cut(s) 313, 340, 589, 857, 1112, 1329, 1374, 1634
BcuI ACTAGT 1 cut(s) 1607
BfaI CTAG 5 cut(s) 639, 693, 1083, 1466, 1608
BfuAI ACCTGC 1 cut(s) 730
BisI GCNGC 8 cut(s) 383, 627, 843, 1059, 1089, 1461, 1521, 1701
BlsI GCNGC 8 cut(s) 384, 628, 844, 1060, 1090, 1462, 1522, 1702
BmcAI AGTACT 1 cut(s) 168
Bme1390I CCNGG 3 cut(s) 162, 462, 1014
BmeT110I CYCGRG 1 cut(s) 592
BmiI GGNNCC 2 cut(s) 485, 513
BmrFI CCNGG 3 cut(s) 162, 462, 1014
BmsI GCATC 5 cut(s) 489, 565, 644, 1088, 1459
BoxI GACNNNNGTC 1 cut(s) 332
BpiI GAAGAC 1 cut(s) 953
BplI GAGNNNNNCTC 2 cut(s) 1401, 1433
BpmI CTGGAG 1 cut(s) 1248
BpuMI CCSGG 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 858
BsaWI WCCGGW 1 cut(s) 945
Bsc4I CCNNNNNNNGG 8 cut(s) 97, 290, 346, 461, 478, 479, 521, 1019
Bse1I ACTGG 4 cut(s) 391, 428, 455, 1368
BseAI TCCGGA 1 cut(s) 945
BseBI CCWGG 2 cut(s) 162, 1014
BseDI CCNNGG 1 cut(s) 858
BseLI CCNNNNNNNGG 8 cut(s) 97, 290, 346, 461, 478, 479, 521, 1019
BseMII CTCAG 4 cut(s) 285, 1082, 1123, 1632
BseNI ACTGG 4 cut(s) 391, 428, 455, 1368
BseSI GKGCMC 2 cut(s) 823, 1298
BseXI GCAGC 8 cut(s) 394, 638, 854, 1070, 1075, 1472, 1532, 1687
BsgI GTGCAG 1 cut(s) 1539
Bsh1236I CGCG 1 cut(s) 1525
BshFI GGCC 4 cut(s) 149, 283, 390, 454
BsiHKAI GWGCWC 1 cut(s) 823
BsiHKCI CYCGRG 1 cut(s) 592
BsiSI CCGG 2 cut(s) 462, 946
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 8 cut(s) 97, 290, 346, 461, 478, 479, 521, 1019
BsmAI GTCTC 8 cut(s) 313, 340, 589, 857, 1112, 1329, 1374, 1634
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 2 cut(s) 322, 1029
BsnI GGCC 4 cut(s) 149, 283, 390, 454
BsoBI CYCGRG 1 cut(s) 592
Bsp1286I GDGCHC 2 cut(s) 823, 1298
Bsp13I TCCGGA 1 cut(s) 945
Bsp143I GATC 3 cut(s) 33, 541, 1123
BspANI GGCC 4 cut(s) 149, 283, 390, 454
BspCNI CTCAG 4 cut(s) 284, 1081, 1122, 1631
BspEI TCCGGA 1 cut(s) 945
BspFNI CGCG 1 cut(s) 1525
BspLI GGNNCC 2 cut(s) 485, 513
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 1 cut(s) 28
BsrI ACTGG 4 cut(s) 391, 428, 455, 1368
BssECI CCNNGG 1 cut(s) 858
BssMI GATC 3 cut(s) 33, 541, 1123
BssT1I CCWWGG 1 cut(s) 858
Bst2UI CCWGG 2 cut(s) 162, 1014
Bst4CI ACNGT 6 cut(s) 105, 356, 935, 1385, 1517, 1645
Bst6I CTCTTC 1 cut(s) 44
BstAPI GCANNNNNTGC 3 cut(s) 632, 899, 1469
BstC8I GCNNGC 2 cut(s) 787, 996
BstDEI CTNAG 8 cut(s) 271, 879, 1028, 1068, 1109, 1420, 1613, 1618
BstENI CCTNNNNNAGG 2 cut(s) 288, 344
BstFNI CGCG 1 cut(s) 1525
BstHHI GCGC 1 cut(s) 1525
BstKTI GATC 3 cut(s) 36, 544, 1126
BstMAI GTCTC 8 cut(s) 313, 340, 589, 857, 1112, 1329, 1374, 1634
BstMBI GATC 3 cut(s) 33, 541, 1123
BstMWI GCNNNNNNNGC 8 cut(s) 632, 899, 1033, 1064, 1085, 1469, 1623, 1706
BstNI CCWGG 2 cut(s) 162, 1014
BstPAI GACNNNNGTC 1 cut(s) 332
BstSCI CCNGG 3 cut(s) 160, 460, 1012
BstSLI GKGCMC 2 cut(s) 823, 1298
BstUI CGCG 1 cut(s) 1525
BstV1I GCAGC 8 cut(s) 394, 638, 854, 1070, 1075, 1472, 1532, 1687
BstV2I GAAGAC 1 cut(s) 953
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 4 cut(s) 149, 283, 390, 454
BtsI GCAGTG 1 cut(s) 1633
BtsIMutI CAGTG 4 cut(s) 361, 1390, 1522, 1633
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 2 cut(s) 787, 996
CfoI GCGC 1 cut(s) 1525
Csp6I GTAC 3 cut(s) 101, 167, 1113
CviAII CATG 5 cut(s) 190, 545, 748, 1304, 1688
CviQI GTAC 3 cut(s) 101, 167, 1113
DdeI CTNAG 8 cut(s) 271, 879, 1028, 1068, 1109, 1420, 1613, 1618
DpnI GATC 3 cut(s) 35, 543, 1125
DpnII GATC 3 cut(s) 33, 541, 1123
DraI TTTAAA 1 cut(s) 672
EaeI YGGCCR 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 858
Eco57I CTGAAG 2 cut(s) 167, 1689
Eco88I CYCGRG 1 cut(s) 592
EcoNI CCTNNNNNAGG 2 cut(s) 288, 344
EcoRII CCWGG 2 cut(s) 160, 1012
EcoT14I CCWWGG 1 cut(s) 858
ErhI CCWWGG 1 cut(s) 858
FaeI CATG 5 cut(s) 193, 548, 751, 1307, 1691
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 1 cut(s) 239
FatI CATG 5 cut(s) 189, 544, 747, 1303, 1687
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 8 cut(s) 383, 627, 843, 1059, 1089, 1461, 1521, 1701
Fsp4HI GCNGC 8 cut(s) 383, 627, 843, 1059, 1089, 1461, 1521, 1701
FspBI CTAG 5 cut(s) 639, 693, 1083, 1466, 1608
GlaI GCGC 1 cut(s) 1524
GluI GCNGC 8 cut(s) 383, 627, 843, 1059, 1089, 1461, 1521, 1701
GsuI CTGGAG 1 cut(s) 1248
HaeIII GGCC 4 cut(s) 149, 283, 390, 454
HapII CCGG 2 cut(s) 462, 946
HhaI GCGC 1 cut(s) 1525
Hin1II CATG 5 cut(s) 193, 548, 751, 1307, 1691
Hin6I GCGC 1 cut(s) 1523
HinP1I GCGC 1 cut(s) 1523
HincII GTYRAC 1 cut(s) 1648
HindII GTYRAC 1 cut(s) 1648
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 5 cut(s) 314, 566, 689, 1182, 1694
HpaII CCGG 2 cut(s) 462, 946
HphI GGTGA 2 cut(s) 1134, 1159
Hpy166II GTNNAC 3 cut(s) 821, 1648, 1679
Hpy188I TCNGA 9 cut(s) 186, 274, 313, 520, 574, 1071, 1181, 1488, 1621
Hpy188III TCNNGA 7 cut(s) 440, 594, 946, 1083, 1265, 1444, 1712
Hpy8I GTNNAC 3 cut(s) 821, 1648, 1679
Hpy99I CGWCG 1 cut(s) 1530
HpyAV CCTTC 5 cut(s) 437, 484, 810, 885, 1026
HpyCH4III ACNGT 6 cut(s) 105, 356, 935, 1385, 1517, 1645
HpyCH4IV ACGT 2 cut(s) 898, 1115
HpyF10VI GCNNNNNNNGC 8 cut(s) 632, 899, 1033, 1064, 1085, 1469, 1623, 1706
HpyF3I CTNAG 8 cut(s) 271, 879, 1028, 1068, 1109, 1420, 1613, 1618
HpySE526I ACGT 2 cut(s) 898, 1115
Hsp92II CATG 5 cut(s) 193, 548, 751, 1307, 1691
HspAI GCGC 1 cut(s) 1523
Kpn2I TCCGGA 1 cut(s) 945
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 3 cut(s) 33, 541, 1123
LmnI GCTCC 3 cut(s) 92, 511, 1338
Lsp1109I GCAGC 8 cut(s) 394, 638, 854, 1070, 1075, 1472, 1532, 1687
LweI GCATC 5 cut(s) 489, 565, 644, 1088, 1459
MaeI CTAG 5 cut(s) 639, 693, 1083, 1466, 1608
MaeII ACGT 2 cut(s) 898, 1115
MaeIII GTNAC 1 cut(s) 1555
MalI GATC 3 cut(s) 35, 543, 1125
MboI GATC 3 cut(s) 33, 541, 1123
MboII GAAGA 9 cut(s) 31, 43, 146, 173, 309, 388, 596, 953, 1513
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 2 cut(s) 823, 1298
MlsI TGGCCA 1 cut(s) 390
MluCI AATT 8 cut(s) 57, 92, 113, 667, 1232, 1299, 1448, 1631
MluNI TGGCCA 1 cut(s) 390
MlyI GAGTC 3 cut(s) 575, 1176, 1703
MmeI TCCRAC 1 cut(s) 1572
Mox20I TGGCCA 1 cut(s) 390
MroI TCCGGA 1 cut(s) 945
MscI TGGCCA 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 390
MspA1I CMGCKG 3 cut(s) 629, 845, 1570
MspI CCGG 2 cut(s) 462, 946
MspR9I CCNGG 3 cut(s) 162, 462, 1014
Mva1269I GAATGC 2 cut(s) 322, 1029
MvaI CCWGG 2 cut(s) 162, 1014
MvnI CGCG 1 cut(s) 1525
MwoI GCNNNNNNNGC 8 cut(s) 632, 899, 1033, 1064, 1085, 1469, 1623, 1706
NciI CCSGG 1 cut(s) 462
NdeII GATC 3 cut(s) 33, 541, 1123
NlaIII CATG 5 cut(s) 193, 548, 751, 1307, 1691
NlaIV GGNNCC 2 cut(s) 485, 513
NmuCI GTSAC 1 cut(s) 1555
PaeR7I CTCGAG 1 cut(s) 592
PctI GAATGC 2 cut(s) 322, 1029
PfeI GAWTC 2 cut(s) 314, 689
PfoI TCCNGGA 1 cut(s) 460
PkrI GCNGC 8 cut(s) 384, 628, 844, 1060, 1090, 1462, 1522, 1702
PleI GAGTC 3 cut(s) 574, 1176, 1702
PpsI GAGTC 3 cut(s) 574, 1176, 1702
PshAI GACNNNNGTC 1 cut(s) 332
Psp6I CCWGG 2 cut(s) 160, 1012
PspGI CCWGG 2 cut(s) 160, 1012
PspN4I GGNNCC 2 cut(s) 485, 513
PsuI RGATCY 1 cut(s) 33
PvuII CAGCTG 3 cut(s) 629, 845, 1570
RsaI GTAC 3 cut(s) 102, 168, 1114
RsaNI GTAC 3 cut(s) 101, 167, 1113
SatI GCNGC 8 cut(s) 383, 627, 843, 1059, 1089, 1461, 1521, 1701
Sau3AI GATC 3 cut(s) 33, 541, 1123
ScaI AGTACT 1 cut(s) 168
SchI GAGTC 3 cut(s) 575, 1176, 1703
ScrFI CCNGG 3 cut(s) 162, 462, 1014
SduI GDGCHC 2 cut(s) 823, 1298
SfaNI GCATC 5 cut(s) 489, 565, 644, 1088, 1459
Sfr274I CTCGAG 1 cut(s) 592
SlaI CTCGAG 1 cut(s) 592
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
SpeI ACTAGT 1 cut(s) 1607
Sse9I AATT 8 cut(s) 57, 92, 113, 667, 1232, 1299, 1448, 1631
SspI AATATT 1 cut(s) 1210
SspMI CTAG 5 cut(s) 639, 693, 1083, 1466, 1608
StyD4I CCNGG 3 cut(s) 160, 460, 1012
StyI CCWWGG 1 cut(s) 858
TaaI ACNGT 6 cut(s) 105, 356, 935, 1385, 1517, 1645
TaiI ACGT 2 cut(s) 901, 1118
TaqI TCGA 9 cut(s) 197, 326, 593, 659, 791, 851, 1272, 1341, 1713
TaqII GACCGA 1 cut(s) 213
TasI AATT 8 cut(s) 57, 92, 113, 667, 1232, 1299, 1448, 1631
TatI WGTACW 1 cut(s) 166
TfiI GAWTC 2 cut(s) 314, 689
TscAI CASTG 4 cut(s) 361, 1390, 1522, 1633
TseFI GTSAC 1 cut(s) 1555
TseI GCWGC 8 cut(s) 382, 626, 842, 1058, 1088, 1460, 1520, 1700
Tsp45I GTSAC 1 cut(s) 1555
TspDTI ATGAA 6 cut(s) 15, 206, 816, 1292, 1440, 1472
TspGWI ACGGA 1 cut(s) 1543
TspRI CASTG 4 cut(s) 361, 1390, 1522, 1633
VneI GTGCAC 1 cut(s) 819
XagI CCTNNNNNAGG 2 cut(s) 288, 344
XapI RAATTY 3 cut(s) 113, 667, 1448
XbaI TCTAGA 1 cut(s) 1082
XcmI CCANNNNNNNNNTGG 1 cut(s) 812
XhoI CTCGAG 1 cut(s) 592
XspI CTAG 5 cut(s) 639, 693, 1083, 1466, 1608
ZrmI AGTACT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.