Rw2G036920

Plant protein of unknown function (DUF936)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
60750987 .. 60753523
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G036920.1

Sequence Viewer

Length: 1581 bp
ATGGCCTCCCTTACACCAGGAGTACTACTAAAGCTTCTTCAGAGCATAAACTCGAACATAAAGGTTCGTGGAGAATATCGGTCAGTCTTGCTACAAGTGATTAGCATTGTCCCTGCATTGAGTGGCTCAGAACTTTGGCCTAATCAAGGCTTCTTTGTAAAAGTCTCGGATTCTTCGCATTCGACTTATGTCTCCCTCTCAAAGGAGGACAGTGAGCTTATATTGAACAATAAGTTGCAGCTTGGCCAGTTCTTCTATGTTGATAGAGTGGAGGCAGGAACACCAGTTCCCATTCTTGAAGGGGTCAGGCCAGTTCCCGGACGACACCCTTTTGTGGGGAACCCGAAGGATTTGATGCAAATGGTGGAGCCCTCAGAGGGTTCAGTCCAAGCTGATGATCATGCAGGAAGCAAATCAAGGGAGTCCTCCGATGCTAAAGAAGAAACCTCGAGACAAAAGATTGTTATTAAAGAGCAAAAGGCCGCTGTTGCATCTAGGTATATGCAAGGTTTTTCGACATTAAATTCAAAAGCTAACTCACAAGATTCTAATGGAGGTGGGAAGCACAATGATAATGAGAGTGGTGGTAAGAAGCAGGTTGGCATGATAAAAGGCAAACAGCAAGAGCTTAATGGTCAGGCACGCTCGATAACTCCTTCCCACAGCAGAGCTGGTGCACTTTCATTAAAGTCGGAAGCAGCTGTATCGAACAACAAGGAGACTGCTGTGCCTTCTAAGAGAACTTCTACAAAACGTGCTTCAATCATACAGGAAAACATAAATCTTAACTGTTTGTCAGTCCGGAAAGAGAAAAGTCTTCCACCAGAAGTAGCTTTGTGGGGTTCTCTGCCAGTTAACTTATTCAAGCCTGGAAAGGGAATGCTTAGAAGGCGAAATATAGCTTCTTTGGTTGCAGCAGAAGCTCAGAAAGAAGCATCTAGAGCTGCAACTCTTGTCAAATGTCTCAGTACGTTTGCCGATCTATGCTCGTCTGCCTCACCAGACAATCCCCACCTCTCACTTACCAAGTTTTTCAGACTCCACCAACTCATTGACCAACCAAATATTGCAGCTCCCTTAAAGGATAAATTAACTCCTTTAACTACAAAACAACTGCCTCCAGATATCGAAAAGTTGAGCAAAAGGACGGGCACAATTCATGGTCAAAGTGCATTGAAGTCTCCAAAGCTCCCCATCGAGTTAAGTGAAGCAGAGAAACTAGAATGGGCTAAAGGAGACAGTGCAAAAGGGATTGCAGAACTACGAGAACTTCTCTTAGATGAAACAAGGACTTGGTTCTTGAAATTCTTGGAGGCAGCACTAGATGCTGGTGGCTTTCATCTGAATACACAAGAGAAGAAAGGCAAGGACAGTGCAGCACGACGGAGTGAGCCAGACAACCATATTGCTGTGACATTATCACAGCTGAAAAGTTCAAATGAGTGGTTGGATAAACTGAAAACTAGTCTAAGCTCAGAGAGCAGTGAATTGGTGGAGACTGTTGACAGATTGAAACAAAAAGTATATGCTTGTTTACTTGTCCATGTGGAGTCTGCTGCTTCAGCTCTCGAAAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

526

Amino Acids

57.36

Weight (kDa)

9.33

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 4 - 119 8.9e-53 Plant protein of unknown function (DUF936)
DUF6857 PF21647 278 - 358 2.3e-21 Domain of unknown function (DUF6857)
DUF6857 PF21647 379 - 523 2.3e-30 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013133)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 586
AccIII TCCGGA 1 cut(s) 801
AciI CCGC 1 cut(s) 483
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 2 cut(s) 523, 1304
AcuI CTGAAG 2 cut(s) 23, 1545
AfaI GTAC 2 cut(s) 24, 970
AfiI CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 875
AgsI TTSAA 9 cut(s) 226, 299, 528, 762, 865, 1177, 1303, 1437, 1513
AhlI ACTAGT 1 cut(s) 1463
AjnI CCWGG 2 cut(s) 16, 868
AloI GAACNNNNNNTCC 4 cut(s) 270, 271, 302, 303
Alw21I GWGCWC 1 cut(s) 679
Alw26I GTCTC 8 cut(s) 169, 196, 445, 713, 968, 1185, 1230, 1490
Alw44I GTGCAC 1 cut(s) 675
Ama87I CYCGRG 1 cut(s) 448
Aor13HI TCCGGA 1 cut(s) 801
AoxI GGCC 5 cut(s) 3, 137, 244, 308, 480
ApaLI GTGCAC 1 cut(s) 675
ApeKI GCWGC 8 cut(s) 238, 698, 914, 944, 1070, 1316, 1376, 1556
ApoI RAATTY 2 cut(s) 523, 1304
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 990
AvaI CYCGRG 1 cut(s) 448
BaeGI GKGCMC 2 cut(s) 679, 1154
BalI TGGCCA 1 cut(s) 246
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 809
Bbv12I GWGCWC 1 cut(s) 679
BbvI GCAGC 8 cut(s) 250, 710, 926, 931, 1082, 1328, 1388, 1543
BccI CCATC 1 cut(s) 1202
BcgI CGANNNNNNTGC 2 cut(s) 687, 721
BciT130I CCWGG 2 cut(s) 18, 870
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 8 cut(s) 169, 196, 445, 713, 968, 1185, 1230, 1490
BcuI ACTAGT 1 cut(s) 1463
BfaI CTAG 5 cut(s) 495, 939, 1220, 1322, 1464
BfuAI ACCTGC 1 cut(s) 586
BisI GCNGC 9 cut(s) 239, 483, 699, 915, 945, 1071, 1317, 1377, 1557
BlsI GCNGC 9 cut(s) 240, 484, 700, 916, 946, 1072, 1318, 1378, 1558
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 3 cut(s) 18, 318, 870
BmeT110I CYCGRG 1 cut(s) 448
BmiI GGNNCC 2 cut(s) 341, 369
BmrFI CCNGG 3 cut(s) 18, 318, 870
BmsI GCATC 5 cut(s) 345, 421, 500, 944, 1315
BoxI GACNNNNGTC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 809
BplI GAGNNNNNCTC 2 cut(s) 1257, 1289
BpmI CTGGAG 1 cut(s) 1104
BpuMI CCSGG 1 cut(s) 318
BsaWI WCCGGW 1 cut(s) 801
Bsc4I CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 875
Bse1I ACTGG 4 cut(s) 247, 284, 311, 851
BseAI TCCGGA 1 cut(s) 801
BseBI CCWGG 2 cut(s) 18, 870
BseLI CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 875
BseMII CTCAG 5 cut(s) 141, 387, 938, 979, 1488
BseNI ACTGG 4 cut(s) 247, 284, 311, 851
BseSI GKGCMC 2 cut(s) 679, 1154
BseXI GCAGC 8 cut(s) 250, 710, 926, 931, 1082, 1328, 1388, 1543
BsgI GTGCAG 1 cut(s) 1395
BshFI GGCC 5 cut(s) 5, 139, 246, 310, 482
BsiHKAI GWGCWC 1 cut(s) 679
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 2 cut(s) 318, 802
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 875
BsmAI GTCTC 8 cut(s) 169, 196, 445, 713, 968, 1185, 1230, 1490
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 2 cut(s) 178, 885
BsnI GGCC 5 cut(s) 5, 139, 246, 310, 482
BsoBI CYCGRG 1 cut(s) 448
Bsp1286I GDGCHC 3 cut(s) 372, 679, 1154
Bsp13I TCCGGA 1 cut(s) 801
Bsp143I GATC 2 cut(s) 397, 979
BspACI CCGC 1 cut(s) 483
BspANI GGCC 5 cut(s) 5, 139, 246, 310, 482
BspCNI CTCAG 5 cut(s) 140, 386, 937, 978, 1487
BspEI TCCGGA 1 cut(s) 801
BspLI GGNNCC 2 cut(s) 341, 369
BspMI ACCTGC 1 cut(s) 586
BsrI ACTGG 4 cut(s) 247, 284, 311, 851
BssMI GATC 2 cut(s) 397, 979
Bst2UI CCWGG 2 cut(s) 18, 870
Bst4CI ACNGT 5 cut(s) 212, 791, 1241, 1373, 1501
BstAPI GCANNNNNTGC 1 cut(s) 1325
BstC8I GCNNGC 1 cut(s) 643
BstDEI CTNAG 9 cut(s) 127, 373, 735, 884, 924, 965, 1276, 1469, 1474
BstENI CCTNNNNNAGG 2 cut(s) 144, 200
BstKTI GATC 2 cut(s) 400, 982
BstMAI GTCTC 8 cut(s) 169, 196, 445, 713, 968, 1185, 1230, 1490
BstMBI GATC 2 cut(s) 397, 979
BstMWI GCNNNNNNNGC 7 cut(s) 488, 889, 920, 941, 1325, 1479, 1562
BstNI CCWGG 2 cut(s) 18, 870
BstPAI GACNNNNGTC 1 cut(s) 188
BstSCI CCNGG 3 cut(s) 16, 316, 868
BstSLI GKGCMC 2 cut(s) 679, 1154
BstV1I GCAGC 8 cut(s) 250, 710, 926, 931, 1082, 1328, 1388, 1543
BstV2I GAAGAC 1 cut(s) 809
BsuRI GGCC 5 cut(s) 5, 139, 246, 310, 482
BtsI GCAGTG 1 cut(s) 1489
BtsIMutI CAGTG 4 cut(s) 217, 1246, 1378, 1489
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 1 cut(s) 643
Csp6I GTAC 2 cut(s) 23, 969
CviAII CATG 4 cut(s) 401, 604, 1160, 1544
CviQI GTAC 2 cut(s) 23, 969
DdeI CTNAG 9 cut(s) 127, 373, 735, 884, 924, 965, 1276, 1469, 1474
DpnI GATC 2 cut(s) 399, 981
DpnII GATC 2 cut(s) 397, 979
EaeI YGGCCR 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 372
Eco32I GATATC 1 cut(s) 1126
Eco57I CTGAAG 2 cut(s) 23, 1545
Eco88I CYCGRG 1 cut(s) 448
EcoNI CCTNNNNNAGG 2 cut(s) 144, 200
EcoRII CCWGG 2 cut(s) 16, 868
EcoRV GATATC 1 cut(s) 1126
EcoT38I GRGCYC 1 cut(s) 372
FaeI CATG 4 cut(s) 404, 607, 1163, 1547
FaqI GGGAC 1 cut(s) 95
FatI CATG 4 cut(s) 400, 603, 1159, 1543
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 9 cut(s) 239, 483, 699, 915, 945, 1071, 1317, 1377, 1557
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 9 cut(s) 239, 483, 699, 915, 945, 1071, 1317, 1377, 1557
FspBI CTAG 5 cut(s) 495, 939, 1220, 1322, 1464
GluI GCNGC 9 cut(s) 239, 483, 699, 915, 945, 1071, 1317, 1377, 1557
GsuI CTGGAG 1 cut(s) 1104
HaeIII GGCC 5 cut(s) 5, 139, 246, 310, 482
HapII CCGG 2 cut(s) 318, 802
Hin1II CATG 4 cut(s) 404, 607, 1163, 1547
HincII GTYRAC 2 cut(s) 856, 1504
HindII GTYRAC 2 cut(s) 856, 1504
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 5 cut(s) 170, 422, 545, 1038, 1550
HpaI GTTAAC 1 cut(s) 856
HpaII CCGG 2 cut(s) 318, 802
HphI GGTGA 1 cut(s) 990
Hpy166II GTNNAC 4 cut(s) 677, 856, 1504, 1535
Hpy188III TCNNGA 7 cut(s) 296, 450, 802, 939, 1121, 1300, 1568
Hpy8I GTNNAC 4 cut(s) 677, 856, 1504, 1535
Hpy99I CGWCG 1 cut(s) 1386
HpyAV CCTTC 5 cut(s) 293, 340, 666, 741, 882
HpyCH4III ACNGT 5 cut(s) 212, 791, 1241, 1373, 1501
HpyCH4IV ACGT 2 cut(s) 754, 971
HpyF10VI GCNNNNNNNGC 7 cut(s) 488, 889, 920, 941, 1325, 1479, 1562
HpyF3I CTNAG 9 cut(s) 127, 373, 735, 884, 924, 965, 1276, 1469, 1474
HpySE526I ACGT 2 cut(s) 754, 971
Hsp92II CATG 4 cut(s) 404, 607, 1163, 1547
Kpn2I TCCGGA 1 cut(s) 801
Ksp22I TGATCA 1 cut(s) 397
KspAI GTTAAC 1 cut(s) 856
Kzo9I GATC 2 cut(s) 397, 979
LmnI GCTCC 3 cut(s) 367, 1078, 1194
Lsp1109I GCAGC 8 cut(s) 250, 710, 926, 931, 1082, 1328, 1388, 1543
LweI GCATC 5 cut(s) 345, 421, 500, 944, 1315
MaeI CTAG 5 cut(s) 495, 939, 1220, 1322, 1464
MaeII ACGT 2 cut(s) 754, 971
MaeIII GTNAC 1 cut(s) 1411
MalI GATC 2 cut(s) 399, 981
MboI GATC 2 cut(s) 397, 979
MboII GAAGA 6 cut(s) 29, 165, 244, 452, 809, 1369
MhlI GDGCHC 3 cut(s) 372, 679, 1154
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 5 cut(s) 523, 1088, 1155, 1304, 1487
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 3 cut(s) 431, 1032, 1559
MmeI TCCRAC 2 cut(s) 672, 1428
Mox20I TGGCCA 1 cut(s) 246
MroI TCCGGA 1 cut(s) 801
MscI TGGCCA 1 cut(s) 246
Msp20I TGGCCA 1 cut(s) 246
MspA1I CMGCKG 3 cut(s) 485, 701, 1426
MspI CCGG 2 cut(s) 318, 802
MspR9I CCNGG 3 cut(s) 18, 318, 870
Mva1269I GAATGC 2 cut(s) 178, 885
MvaI CCWGG 2 cut(s) 18, 870
MwoI GCNNNNNNNGC 7 cut(s) 488, 889, 920, 941, 1325, 1479, 1562
NciI CCSGG 1 cut(s) 318
NdeII GATC 2 cut(s) 397, 979
NlaIII CATG 4 cut(s) 404, 607, 1163, 1547
NlaIV GGNNCC 2 cut(s) 341, 369
NmuCI GTSAC 1 cut(s) 1411
PaeR7I CTCGAG 1 cut(s) 448
PctI GAATGC 2 cut(s) 178, 885
PfeI GAWTC 2 cut(s) 170, 545
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 9 cut(s) 240, 484, 700, 916, 946, 1072, 1318, 1378, 1558
PleI GAGTC 3 cut(s) 430, 1032, 1558
PpsI GAGTC 3 cut(s) 430, 1032, 1558
PshAI GACNNNNGTC 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 16, 868
PspGI CCWGG 2 cut(s) 16, 868
PspN4I GGNNCC 2 cut(s) 341, 369
PvuII CAGCTG 2 cut(s) 701, 1426
RsaI GTAC 2 cut(s) 24, 970
RsaNI GTAC 2 cut(s) 23, 969
SatI GCNGC 9 cut(s) 239, 483, 699, 915, 945, 1071, 1317, 1377, 1557
Sau3AI GATC 2 cut(s) 397, 979
ScaI AGTACT 1 cut(s) 24
SchI GAGTC 3 cut(s) 431, 1032, 1559
ScrFI CCNGG 3 cut(s) 18, 318, 870
SduI GDGCHC 3 cut(s) 372, 679, 1154
SfaNI GCATC 5 cut(s) 345, 421, 500, 944, 1315
Sfr274I CTCGAG 1 cut(s) 448
SlaI CTCGAG 1 cut(s) 448
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
SpeI ACTAGT 1 cut(s) 1463
Sse9I AATT 5 cut(s) 523, 1088, 1155, 1304, 1487
SsiI CCGC 1 cut(s) 483
SspI AATATT 1 cut(s) 1066
SspMI CTAG 5 cut(s) 495, 939, 1220, 1322, 1464
StyD4I CCNGG 3 cut(s) 16, 316, 868
TaaI ACNGT 5 cut(s) 212, 791, 1241, 1373, 1501
TaiI ACGT 2 cut(s) 757, 974
TaqI TCGA 9 cut(s) 53, 182, 449, 515, 647, 707, 1128, 1197, 1569
TaqII GACCGA 1 cut(s) 69
TasI AATT 5 cut(s) 523, 1088, 1155, 1304, 1487
TatI WGTACW 1 cut(s) 22
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 2 cut(s) 170, 545
TscAI CASTG 4 cut(s) 217, 1246, 1378, 1489
TseFI GTSAC 1 cut(s) 1411
TseI GCWGC 8 cut(s) 238, 698, 914, 944, 1070, 1316, 1376, 1556
Tsp45I GTSAC 1 cut(s) 1411
TspDTI ATGAA 4 cut(s) 672, 1148, 1296, 1328
TspGWI ACGGA 1 cut(s) 1399
TspRI CASTG 4 cut(s) 217, 1246, 1378, 1489
VneI GTGCAC 1 cut(s) 675
XagI CCTNNNNNAGG 2 cut(s) 144, 200
XapI RAATTY 2 cut(s) 523, 1304
XbaI TCTAGA 1 cut(s) 938
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XhoI CTCGAG 1 cut(s) 448
XspI CTAG 5 cut(s) 495, 939, 1220, 1322, 1464
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.