Rroxscaffold_2G00100010

Plant protein of unknown function (DUF936)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
21852636 .. 21854836
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100010.1

Sequence Viewer

Length: 1590 bp
ATGGCATCCCTTACACCAGGAGTACTACTAAAGCTTCTTCAGAGCATGAACTCGAACATAAAGGTTCGTGGAGAATATCGGTCAGTCCTGCTACAAGTGATTAGCATTGTCCCTGCCTTGAGTGGCTCAGAACTTTGGCCTAATCAAGGCTTCTTTGTAAAAGTCTCGGATTCTTCGCATTCGACTTATGTCTCCCTCTCAAAGGAGGACAGTGAGCTTATATTGAACAATAAGTTGCAGCTTGGCCAGTTCTTCTATGTTGATAGAGTGGAGGCAGGAACACCAGTTCCCATTCTTGAAGGGGTCAGGCCAGTTCCCGGACGACACCCTTTTGTGGGGAACCCGAAGGATTTGATGCAAATGGTGGAGCCATCAGAGGGTCCAGTCCAAGCTGATGATCATGCAGGAAGCAATAGTTTGAAATCAAGGGAGTCCTCGGATGTTAAAGAAGAAACCTCAAGACAAAAGATTGTTATTAAAGAGGAAAAGGCAGCTGTTGCATCTAGGTATATGCAAGGTTTTTCGACATCAAATTCAAAAGCTAACTCACAAGATTCTAGTGGAGGTGGGAAGCACAATGATAATGAGAGTGGTGGTAAGAAGCAGGTTGGCATGATAAAAGGCAAACAGCAAGAGCTTAATGGTCAGGCACGCTCGATAACTCCTTCCCACAGCAGAGCTGGTGCACTTTCATTAAAGCCAGAAGCAGCTGTATCGAACACCAAGGAGACTGCTGTGCCTTCTAAGAGAACTTCTGCAAAACGTGCTTCAATCATACAGGAAAACATAAATCTTAACTGTTTGTCAGTCCGGAAAGAGAAAAGTCTTCCACCAGAAGTAGCTTTGTGGGGTTCTCTGCCAGCTAACTTATTGAAGCCCGGAAAGGGAATGCTTAGAAGGCGAAATATAGCTTCTTTGGTTGCAGCAGAAGCTCAGAAAGAAGCATCTAGAGCTGCAACTCTTGTCAAATGTCTCAGTATGTTTGCCGATCTATGCTCATCTGCCTCACCAGACAATCCCCACCTCTCACTCACCAAGTTTTTCAGACTCCACCAACTCATTGACCAACCAAATATTGCAGCTCCCTTAAAGGATAAATTAACTCCTTTAACGACAAAACAACTGCCTCCAGATATCGAAAAGTTGAGCAAAAGGACTGGCACAATTCATGGTCAAAGTGCATTGAAGTCTACAAAGCTCCCCATCGAGTTAAGTGAAGCAGAGAAACTAGAATGGGCTAAAGGAGACAGTGCAAAAGGGATTGCAGAACTACGAGAACTTCTCTTAGATGAAACAAGGTCTTGGTTCTTGAAATTCTTGGAGGCAGCACTAGACGCTGGTGGCTTTCATCTGAATACACAAGAGAAGAAAGGCAAGGACAGTGCAGCGCGACGGAGTGAGCCAGACAACCATATTGCTGTGACATTATCACAGCTGAAAAGTTCAAATGAGTGGTTGGATAAACTGAAAACTAGTCTAAGCTCAGAGAGCAGTGAATTGGCGGAGACTGTTGACAGATTGAAACAAAAAGTATATGCTTGTTTACTTGTTCATGTGGAGTCTGCTGCTTCAGCTCTCGAAAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

529

Amino Acids

57.58

Weight (kDa)

9.28

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 4 - 119 1.7e-53 Plant protein of unknown function (DUF936)
DUF6857 PF21647 281 - 360 4.4e-22 Domain of unknown function (DUF6857)
DUF6857 PF21647 382 - 526 1.7e-30 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013133)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 595
AccI GTMKAC 1 cut(s) 1190
AccII CGCG 1 cut(s) 1390
AccIII TCCGGA 1 cut(s) 810
AciI CCGC 1 cut(s) 1502
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 2 cut(s) 532, 1313
AcuI CTGAAG 2 cut(s) 23, 1554
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 884
AhlI ACTAGT 1 cut(s) 1472
AjnI CCWGG 1 cut(s) 16
AloI GAACNNNNNNTCC 4 cut(s) 270, 271, 302, 303
Alw21I GWGCWC 1 cut(s) 688
Alw26I GTCTC 6 cut(s) 169, 196, 722, 977, 1239, 1499
Alw44I GTGCAC 1 cut(s) 684
Aor13HI TCCGGA 1 cut(s) 810
AoxI GGCC 3 cut(s) 137, 244, 308
ApaLI GTGCAC 1 cut(s) 684
ApeKI GCWGC 9 cut(s) 238, 491, 707, 923, 953, 1079, 1325, 1385, 1565
ApoI RAATTY 2 cut(s) 532, 1313
AspLEI GCGC 1 cut(s) 1390
AspS9I GGNCC 1 cut(s) 380
AsuC2I CCSGG 2 cut(s) 318, 879
AsuHPI GGTGA 2 cut(s) 999, 1024
AvaII GGWCC 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 688
BalI TGGCCA 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 818
Bbv12I GWGCWC 1 cut(s) 688
BbvI GCAGC 9 cut(s) 250, 503, 719, 935, 940, 1091, 1337, 1397, 1552
BccI CCATC 2 cut(s) 379, 1211
BcgI CGANNNNNNTGC 2 cut(s) 696, 730
BciT130I CCWGG 1 cut(s) 18
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 2 cut(s) 318, 879
BcoDI GTCTC 6 cut(s) 169, 196, 722, 977, 1239, 1499
BcuI ACTAGT 1 cut(s) 1472
BfaI CTAG 6 cut(s) 504, 558, 948, 1229, 1331, 1473
BfuAI ACCTGC 1 cut(s) 595
BisI GCNGC 9 cut(s) 239, 492, 708, 924, 954, 1080, 1326, 1386, 1566
BlsI GCNGC 9 cut(s) 240, 493, 709, 925, 955, 1081, 1327, 1387, 1567
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 3 cut(s) 18, 318, 879
Bme18I GGWCC 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 3 cut(s) 341, 369, 381
BmrFI CCNGG 3 cut(s) 18, 318, 879
BmsI GCATC 4 cut(s) 14, 345, 509, 953
BoxI GACNNNNGTC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 818
BplI GAGNNNNNCTC 2 cut(s) 1266, 1298
BpmI CTGGAG 1 cut(s) 1113
BpuEI CTTGAG 2 cut(s) 139, 442
BpuMI CCSGG 2 cut(s) 318, 879
BsaJI CCNNGG 2 cut(s) 435, 723
BsaWI WCCGGW 1 cut(s) 810
Bsc4I CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 884
Bse1I ACTGG 5 cut(s) 247, 284, 311, 383, 1162
BseAI TCCGGA 1 cut(s) 810
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 435, 723
BseGI GGATG 2 cut(s) 5, 445
BseLI CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 884
BseMII CTCAG 4 cut(s) 141, 947, 988, 1497
BseNI ACTGG 5 cut(s) 247, 284, 311, 383, 1162
BseSI GKGCMC 1 cut(s) 688
BseXI GCAGC 9 cut(s) 250, 503, 719, 935, 940, 1091, 1337, 1397, 1552
BsgI GTGCAG 1 cut(s) 1404
Bsh1236I CGCG 1 cut(s) 1390
BshFI GGCC 3 cut(s) 139, 246, 310
BsiHKAI GWGCWC 1 cut(s) 688
BsiSI CCGG 3 cut(s) 318, 811, 879
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 7 cut(s) 146, 202, 317, 334, 335, 377, 884
BsmAI GTCTC 6 cut(s) 169, 196, 722, 977, 1239, 1499
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 2 cut(s) 178, 894
BsnI GGCC 3 cut(s) 139, 246, 310
Bsp1286I GDGCHC 1 cut(s) 688
Bsp13I TCCGGA 1 cut(s) 810
Bsp143I GATC 2 cut(s) 397, 988
BspACI CCGC 1 cut(s) 1502
BspANI GGCC 3 cut(s) 139, 246, 310
BspCNI CTCAG 4 cut(s) 140, 946, 987, 1496
BspEI TCCGGA 1 cut(s) 810
BspFNI CGCG 1 cut(s) 1390
BspLI GGNNCC 3 cut(s) 341, 369, 381
BspMI ACCTGC 1 cut(s) 595
BsrI ACTGG 5 cut(s) 247, 284, 311, 383, 1162
BssECI CCNNGG 2 cut(s) 435, 723
BssMI GATC 2 cut(s) 397, 988
BssT1I CCWWGG 1 cut(s) 723
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 5 cut(s) 212, 800, 1250, 1382, 1510
BstAPI GCANNNNNTGC 2 cut(s) 497, 764
BstC8I GCNNGC 2 cut(s) 652, 861
BstDEI CTNAG 8 cut(s) 127, 744, 893, 933, 974, 1285, 1478, 1483
BstENI CCTNNNNNAGG 2 cut(s) 144, 200
BstF5I GGATG 2 cut(s) 5, 445
BstFNI CGCG 1 cut(s) 1390
BstHHI GCGC 1 cut(s) 1390
BstKTI GATC 2 cut(s) 400, 991
BstMAI GTCTC 6 cut(s) 169, 196, 722, 977, 1239, 1499
BstMBI GATC 2 cut(s) 397, 988
BstMWI GCNNNNNNNGC 8 cut(s) 497, 764, 898, 929, 950, 1334, 1488, 1571
BstNI CCWGG 1 cut(s) 18
BstPAI GACNNNNGTC 1 cut(s) 188
BstSCI CCNGG 3 cut(s) 16, 316, 877
BstSLI GKGCMC 1 cut(s) 688
BstUI CGCG 1 cut(s) 1390
BstV1I GCAGC 9 cut(s) 250, 503, 719, 935, 940, 1091, 1337, 1397, 1552
BstV2I GAAGAC 1 cut(s) 818
BsuRI GGCC 3 cut(s) 139, 246, 310
BtsCI GGATG 2 cut(s) 5, 445
BtsI GCAGTG 1 cut(s) 1498
BtsIMutI CAGTG 4 cut(s) 217, 1255, 1387, 1498
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 652, 861
CfoI GCGC 1 cut(s) 1390
Cfr13I GGNCC 1 cut(s) 380
CseI GACGC 1 cut(s) 1343
Csp6I GTAC 1 cut(s) 23
CviAII CATG 5 cut(s) 46, 401, 613, 1169, 1553
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 8 cut(s) 127, 744, 893, 933, 974, 1285, 1478, 1483
DpnI GATC 2 cut(s) 399, 990
DpnII GATC 2 cut(s) 397, 988
EaeI YGGCCR 1 cut(s) 244
EciI GGCGGA 1 cut(s) 1517
Eco130I CCWWGG 1 cut(s) 723
Eco32I GATATC 1 cut(s) 1135
Eco47I GGWCC 1 cut(s) 380
Eco57I CTGAAG 2 cut(s) 23, 1554
EcoNI CCTNNNNNAGG 2 cut(s) 144, 200
EcoRII CCWGG 1 cut(s) 16
EcoRV GATATC 1 cut(s) 1135
EcoT14I CCWWGG 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 5 cut(s) 49, 404, 616, 1172, 1556
FaqI GGGAC 1 cut(s) 95
FatI CATG 5 cut(s) 45, 400, 612, 1168, 1552
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 1190
Fnu4HI GCNGC 9 cut(s) 239, 492, 708, 924, 954, 1080, 1326, 1386, 1566
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 9 cut(s) 239, 492, 708, 924, 954, 1080, 1326, 1386, 1566
FspBI CTAG 6 cut(s) 504, 558, 948, 1229, 1331, 1473
GlaI GCGC 1 cut(s) 1389
GluI GCNGC 9 cut(s) 239, 492, 708, 924, 954, 1080, 1326, 1386, 1566
GsuI CTGGAG 1 cut(s) 1113
HaeIII GGCC 3 cut(s) 139, 246, 310
HapII CCGG 3 cut(s) 318, 811, 879
HgaI GACGC 1 cut(s) 1343
HhaI GCGC 1 cut(s) 1390
Hin1II CATG 5 cut(s) 49, 404, 616, 1172, 1556
Hin6I GCGC 1 cut(s) 1388
HinP1I GCGC 1 cut(s) 1388
HincII GTYRAC 1 cut(s) 1513
HindII GTYRAC 1 cut(s) 1513
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 5 cut(s) 170, 431, 554, 1047, 1559
HpaII CCGG 3 cut(s) 318, 811, 879
HphI GGTGA 2 cut(s) 999, 1024
Hpy166II GTNNAC 4 cut(s) 686, 1191, 1513, 1544
Hpy188I TCNGA 9 cut(s) 42, 130, 169, 376, 439, 936, 1046, 1353, 1486
Hpy188III TCNNGA 7 cut(s) 296, 459, 811, 948, 1130, 1309, 1577
Hpy8I GTNNAC 4 cut(s) 686, 1191, 1513, 1544
Hpy99I CGWCG 1 cut(s) 1395
HpyAV CCTTC 5 cut(s) 293, 340, 675, 750, 891
HpyCH4III ACNGT 5 cut(s) 212, 800, 1250, 1382, 1510
HpyCH4IV ACGT 1 cut(s) 763
HpyF10VI GCNNNNNNNGC 8 cut(s) 497, 764, 898, 929, 950, 1334, 1488, 1571
HpyF3I CTNAG 8 cut(s) 127, 744, 893, 933, 974, 1285, 1478, 1483
HpySE526I ACGT 1 cut(s) 763
Hsp92II CATG 5 cut(s) 49, 404, 616, 1172, 1556
HspAI GCGC 1 cut(s) 1388
Kpn2I TCCGGA 1 cut(s) 810
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 2 cut(s) 397, 988
LmnI GCTCC 3 cut(s) 367, 1087, 1203
Lsp1109I GCAGC 9 cut(s) 250, 503, 719, 935, 940, 1091, 1337, 1397, 1552
LweI GCATC 4 cut(s) 14, 345, 509, 953
MaeI CTAG 6 cut(s) 504, 558, 948, 1229, 1331, 1473
MaeII ACGT 1 cut(s) 763
MaeIII GTNAC 1 cut(s) 1420
MalI GATC 2 cut(s) 399, 990
MboI GATC 2 cut(s) 397, 988
MboII GAAGA 6 cut(s) 29, 165, 244, 461, 818, 1378
MhlI GDGCHC 1 cut(s) 688
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 5 cut(s) 532, 1097, 1164, 1313, 1496
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 3 cut(s) 440, 1041, 1568
MmeI TCCRAC 1 cut(s) 1437
Mox20I TGGCCA 1 cut(s) 246
MroI TCCGGA 1 cut(s) 810
MscI TGGCCA 1 cut(s) 246
MseI TTAA 9 cut(s) 444, 477, 639, 695, 795, 1088, 1100, 1109, 1211
Msp20I TGGCCA 1 cut(s) 246
MspA1I CMGCKG 3 cut(s) 494, 710, 1435
MspI CCGG 3 cut(s) 318, 811, 879
MspR9I CCNGG 3 cut(s) 18, 318, 879
Mva1269I GAATGC 2 cut(s) 178, 894
MvaI CCWGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 1390
MwoI GCNNNNNNNGC 8 cut(s) 497, 764, 898, 929, 950, 1334, 1488, 1571
NciI CCSGG 2 cut(s) 318, 879
NdeII GATC 2 cut(s) 397, 988
NlaIII CATG 5 cut(s) 49, 404, 616, 1172, 1556
NlaIV GGNNCC 3 cut(s) 341, 369, 381
NmuCI GTSAC 1 cut(s) 1420
PctI GAATGC 2 cut(s) 178, 894
PfeI GAWTC 2 cut(s) 170, 554
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 9 cut(s) 240, 493, 709, 925, 955, 1081, 1327, 1387, 1567
PleI GAGTC 3 cut(s) 439, 1041, 1567
PpsI GAGTC 3 cut(s) 439, 1041, 1567
PshAI GACNNNNGTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 3 cut(s) 341, 369, 381
PspPI GGNCC 1 cut(s) 380
PvuII CAGCTG 3 cut(s) 494, 710, 1435
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 9 cut(s) 444, 477, 639, 695, 795, 1088, 1100, 1109, 1211
SatI GCNGC 9 cut(s) 239, 492, 708, 924, 954, 1080, 1326, 1386, 1566
Sau3AI GATC 2 cut(s) 397, 988
Sau96I GGNCC 1 cut(s) 380
ScaI AGTACT 1 cut(s) 24
SchI GAGTC 3 cut(s) 440, 1041, 1568
ScrFI CCNGG 3 cut(s) 18, 318, 879
SduI GDGCHC 1 cut(s) 688
SfaNI GCATC 4 cut(s) 14, 345, 509, 953
SinI GGWCC 1 cut(s) 380
SmlI CTYRAG 2 cut(s) 118, 457
SmoI CTYRAG 2 cut(s) 118, 457
SpeI ACTAGT 1 cut(s) 1472
Sse9I AATT 5 cut(s) 532, 1097, 1164, 1313, 1496
SsiI CCGC 1 cut(s) 1502
SspI AATATT 1 cut(s) 1075
SspMI CTAG 6 cut(s) 504, 558, 948, 1229, 1331, 1473
StyD4I CCNGG 3 cut(s) 16, 316, 877
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 5 cut(s) 212, 800, 1250, 1382, 1510
TaiI ACGT 1 cut(s) 766
TaqI TCGA 8 cut(s) 53, 182, 524, 656, 716, 1137, 1206, 1578
TaqII GACCGA 1 cut(s) 69
TasI AATT 5 cut(s) 532, 1097, 1164, 1313, 1496
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 2 cut(s) 170, 554
Tru1I TTAA 9 cut(s) 444, 477, 639, 695, 795, 1088, 1100, 1109, 1211
Tru9I TTAA 9 cut(s) 444, 477, 639, 695, 795, 1088, 1100, 1109, 1211
TscAI CASTG 4 cut(s) 217, 1255, 1387, 1498
TseFI GTSAC 1 cut(s) 1420
TseI GCWGC 9 cut(s) 238, 491, 707, 923, 953, 1079, 1325, 1385, 1565
Tsp45I GTSAC 1 cut(s) 1420
TspDTI ATGAA 6 cut(s) 62, 681, 1157, 1305, 1337, 1541
TspGWI ACGGA 1 cut(s) 1408
TspRI CASTG 4 cut(s) 217, 1255, 1387, 1498
VneI GTGCAC 1 cut(s) 684
VpaK11BI GGWCC 1 cut(s) 380
XagI CCTNNNNNAGG 2 cut(s) 144, 200
XapI RAATTY 2 cut(s) 532, 1313
XbaI TCTAGA 1 cut(s) 947
XcmI CCANNNNNNNNNTGG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 1190
XspI CTAG 6 cut(s) 504, 558, 948, 1229, 1331, 1473
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.