Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016716

Physical Location & Seq

Genomic Coordinates Forward (+)

4902953 .. 4904229

Gene Structure 1277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGATTCTTCGGAGGCTTGTTCTGTCTGCAACATCGAATTCAAATCCCAGAAGAAGCCAATCACTTTCATCTTCTGGTGTTCGTATTCTCTCATCATCATCTTCAGATAGATATACGTCGTCCTCGCAACGATATTCCGGTGACGATAGACTCGCCAGGCTAAGGCACAAGGACTGGTTAGCCCCAAACGAAGTTTTGAAAATCTTCGACAATGTCAAAGATCCGAGCTTCCTGCTGCCAGCTTACCAGCATTACTCTAAACGGAAAGACTATCAACCAACGGAATCTCTCTACGCCCTTATGATCAACAAGTTTGGCCAAGCTAAAATGTACGATGAAATCGAAGAAGTAATGAGAACTATAAAGCTTGAGAAAAGATGTCGTTTCTCAGAGGAGTTTTTCTACAATTTGATGAGGATTTACGGGAACTTAGCCGGAAGAATCAACCGAGCGATCGAGATATTGTTCGGTATGCCGGATTTTGGATGCTGGCCAAGTTCTAAGAGTTTCAATTTCATACTGAATTTACTTGTTTCCGCGAAGTTGTTCGATGAGATTCATAAGATCTTTGTGAGTGCTCCTAAGCTAGGTGTTGAGATCGATGCTTGTTGCTTGAATATACTCATCAAAGGACTCTGTGAGAGTGGGAATTTAGAAGCTGCACTCCAACTGCTCGACGAATTTCCTCAACAAAAATCACGGCCTAATGTGATGACGTTTTCTCCTTTGATTCGTGGTTTCTGTAATAAGGGAAAGTTCGAAGAAGCTTTTAAATTGTTGGAGAGGATGGAGAAGGAACGAATCGAACCAGATACTATCACGTTTAACATTTTGATTTCAGGGCTTAGGAAGAAAGGTAGAGTTGAAGAAGGGATTGATCTTTTAGAGAGAATGAAGGTAAAGGGGTGTGAACCAAATCCTGGGACTTATCAGGAGGTGTTGTATGGTCTCTTGGATAAAAAGAGGAACTTGGAAGCTAAAGAGATGATGAGTCAGATGATTTCATGGGGTATGAGACCCAGTTTTCTGTCTTACAAGAAGATGGTTTTGGGGCTTTGTGAAACGAAGTCGGTTGTGGAAATGGACTGGGTTTTGAGGCAAATGGTGAATCATGGTTTTGTTCCAAAGACATTGATGTGGTGGAAAGTTGTTCAGTGTGTTGTTTCAAAGAACAATGATGACTCTCAAGCAAATTTGGATCGTATTACTGCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

405

Amino Acids

46.71

Weight (kDa)

9.13

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	116 - 226	8.3e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	165 - 213	6.6e-06	PPR repeat family
PPR_long	PF17177	166 - 287	3.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	197 - 227	2.6e-07	PPR repeat
PPR_2	PF13041	201 - 249	1.1e-10	PPR repeat family
PPR_1	PF12854	234 - 264	8.9e-11	PPR repeat
PPR_3	PF13812	234 - 280	7.1e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	235 - 283	7.9e-17	PPR repeat family
PPR	PF01535	239 - 267	9.2e-07	PPR repeat
PPR_1	PF12854	268 - 299	3.4e-09	PPR repeat
PPR_2	PF13041	273 - 317	2.9e-10	PPR repeat family
PPR	PF01535	273 - 303	1e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14580
fragaria_vesca	FvH4_3g16970
malus_domestica	MD11G1276100.v1.1
prunus_persica	Prupe.4G152100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0028281
rosa_laevigata	RLG00000033079
rosa_multiflora	Rmu_sc0001571.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051440
rosa_rugosa	Rorug05G0105500
rosa_samantha	Rh5AG199000 Rh5BG197500 Rh5CG217300 Rh5DG199200
rosa_wichuraiana	Rw5G018150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccII	CGCG	1 cut(s)	539
AciI	CCGC	1 cut(s)	537
AclWI	GGATC	2 cut(s)	215, 1206
AcoI	YGGCCR	2 cut(s)	316, 491
AcsI	RAATTY	5 cut(s)	37, 523, 649, 680, 1192
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	4 cut(s)	162, 482, 587, 920
AgsI	TTSAA	6 cut(s)	42, 199, 511, 616, 866, 1167
AjnI	CCWGG	2 cut(s)	155, 919
AjuI	GAANNNNNNNTTGG	2 cut(s)	1031, 1063
AluBI	AGCT	8 cut(s)	228, 242, 323, 367, 586, 659, 767, 977
AluI	AGCT	8 cut(s)	228, 242, 323, 367, 586, 659, 767, 977
Alw21I	GWGCWC	1 cut(s)	580
Alw26I	GTCTC	2 cut(s)	953, 1009
AlwI	GGATC	2 cut(s)	215, 1206
AoxI	GGCC	3 cut(s)	316, 491, 701
ApeKI	GCWGC	2 cut(s)	235, 659
ApoI	RAATTY	5 cut(s)	37, 523, 649, 680, 1192
Asp700I	GAANNNNTTC	2 cut(s)	203, 545
AsuHPI	GGTGA	2 cut(s)	152, 1117
AsuII	TTCGAA	1 cut(s)	759
BalI	TGGCCA	2 cut(s)	318, 493
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	2 cut(s)	222, 646
BccI	CCATC	2 cut(s)	781, 1036
BceAI	ACGGC	1 cut(s)	716
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	2 cut(s)	157, 921
BclI	TGATCA	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	953, 1009
BfaI	CTAG	2 cut(s)	587, 1216
BglII	AGATCT	1 cut(s)	564
BisI	GCNGC	2 cut(s)	236, 660
BlsI	GCNGC	2 cut(s)	237, 661
Bme1390I	CCNGG	2 cut(s)	157, 921
BmrFI	CCNGG	2 cut(s)	157, 921
BmrI	ACTGGG	2 cut(s)	1014, 1096
BmsI	GCATC	2 cut(s)	476, 592
BmuI	ACTGGG	2 cut(s)	1014, 1096
Bpu10I	CCTNAGC	3 cut(s)	161, 582, 845
Bpu14I	TTCGAA	1 cut(s)	759
BpuEI	CTTGAG	2 cut(s)	389, 1170
Bsa29I	ATCGAT	1 cut(s)	600
BsaI	GGTCTC	2 cut(s)	953, 1009
BsaJI	CCNNGG	1 cut(s)	920
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	4 cut(s)	706, 736, 926, 956
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 482, 587, 920
Bse1I	ACTGG	3 cut(s)	179, 1020, 1091
BseBI	CCWGG	2 cut(s)	157, 921
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	920
BseGI	GGATG	2 cut(s)	491, 792
BseLI	CCNNNNNNNGG	4 cut(s)	162, 482, 587, 920
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	3 cut(s)	179, 1020, 1091
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	222, 646
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	539
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	318, 493, 703
BshVI	ATCGAT	1 cut(s)	600
BsiEI	CGRYCG	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	580
BsiSI	CCGG	3 cut(s)	138, 435, 476
BslFI	GGGAC	1 cut(s)	937
BslI	CCNNNNNNNGG	4 cut(s)	162, 482, 587, 920
BsmAI	GTCTC	2 cut(s)	953, 1009
BsmFI	GGGAC	1 cut(s)	937
BsnI	GGCC	3 cut(s)	318, 493, 703
Bso31I	GGTCTC	2 cut(s)	953, 1009
Bsp119I	TTCGAA	1 cut(s)	759
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	7 cut(s)	220, 303, 453, 564, 597, 877, 1198
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	3 cut(s)	318, 493, 703
BspCNI	CTCAG	1 cut(s)	401
BspDI	ATCGAT	1 cut(s)	600
BspFNI	CGCG	1 cut(s)	539
BspPI	GGATC	2 cut(s)	215, 1206
BspT104I	TTCGAA	1 cut(s)	759
BspTNI	GGTCTC	2 cut(s)	953, 1009
BsrI	ACTGG	3 cut(s)	179, 1020, 1091
BssECI	CCNNGG	1 cut(s)	920
BssMI	GATC	7 cut(s)	220, 303, 453, 564, 597, 877, 1198
Bst2UI	CCWGG	2 cut(s)	157, 921
BstBI	TTCGAA	1 cut(s)	759
BstC8I	GCNNGC	3 cut(s)	240, 491, 1213
BstDEI	CTNAG	6 cut(s)	161, 388, 430, 501, 582, 845
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	491, 792
BstFNI	CGCG	1 cut(s)	539
BstKTI	GATC	7 cut(s)	223, 306, 456, 567, 600, 880, 1201
BstMAI	GTCTC	2 cut(s)	953, 1009
BstMBI	GATC	7 cut(s)	220, 303, 453, 564, 597, 877, 1198
BstMCI	CGRYCG	1 cut(s)	456
BstNI	CCWGG	2 cut(s)	157, 921
BstSCI	CCNGG	2 cut(s)	155, 919
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	2 cut(s)	222, 646
BstX2I	RGATCY	2 cut(s)	220, 564
BstYI	RGATCY	2 cut(s)	220, 564
Bsu15I	ATCGAT	1 cut(s)	600
BsuRI	GGCC	3 cut(s)	318, 493, 703
BsuTUI	ATCGAT	1 cut(s)	600
BtsCI	GGATG	2 cut(s)	491, 792
BtsIMutI	CAGTG	1 cut(s)	1160
Cac8I	GCNNGC	3 cut(s)	240, 491, 1213
ClaI	ATCGAT	1 cut(s)	600
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	2 cut(s)	1005, 1112
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	6 cut(s)	161, 388, 430, 501, 582, 845
DpnI	GATC	7 cut(s)	222, 305, 455, 566, 599, 879, 1200
DpnII	GATC	7 cut(s)	220, 303, 453, 564, 597, 877, 1198
DraI	TTTAAA	1 cut(s)	772
EaeI	YGGCCR	2 cut(s)	316, 491
Eco31I	GGTCTC	2 cut(s)	953, 1009
Eco57I	CTGAAG	1 cut(s)	87
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	155, 919
FaeI	CATG	2 cut(s)	1008, 1115
FalI	AAGNNNNNCTT	2 cut(s)	953, 985
FaqI	GGGAC	1 cut(s)	937
FatI	CATG	2 cut(s)	1004, 1111
FbaI	TGATCA	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	236, 660
FokI	GGATG	2 cut(s)	498, 799
Fsp4HI	GCNGC	2 cut(s)	236, 660
FspBI	CTAG	2 cut(s)	587, 1216
GluI	GCNGC	2 cut(s)	236, 660
HaeIII	GGCC	3 cut(s)	318, 493, 703
HapII	CCGG	3 cut(s)	138, 435, 476
Hin1II	CATG	2 cut(s)	1008, 1115
HindIII	AAGCTT	2 cut(s)	365, 765
HpaII	CCGG	3 cut(s)	138, 435, 476
HphI	GGTGA	2 cut(s)	152, 1117
Hpy166II	GTNNAC	1 cut(s)	911
Hpy188I	TCNGA	5 cut(s)	12, 106, 225, 391, 996
Hpy188III	TCNNGA	2 cut(s)	457, 932
Hpy8I	GTNNAC	1 cut(s)	911
Hpy99I	CGWCG	2 cut(s)	121, 680
HpyAV	CCTTC	3 cut(s)	787, 863, 889
HpyCH4IV	ACGT	3 cut(s)	116, 716, 821
HpyCH4V	TGCA	2 cut(s)	29, 662
HpyF3I	CTNAG	6 cut(s)	161, 388, 430, 501, 582, 845
HpySE526I	ACGT	3 cut(s)	116, 716, 821
Hsp92II	CATG	2 cut(s)	1008, 1115
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	7 cut(s)	220, 303, 453, 564, 597, 877, 1198
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	2 cut(s)	222, 646
LweI	GCATC	2 cut(s)	476, 592
MaeI	CTAG	2 cut(s)	587, 1216
MaeII	ACGT	3 cut(s)	116, 716, 821
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	7 cut(s)	222, 305, 455, 566, 599, 879, 1200
MboI	GATC	7 cut(s)	220, 303, 453, 564, 597, 877, 1198
MflI	RGATCY	2 cut(s)	220, 564
MhlI	GDGCHC	1 cut(s)	580
MlsI	TGGCCA	2 cut(s)	318, 493
MluCI	AATT	8 cut(s)	37, 406, 511, 523, 649, 680, 773, 1192
MluNI	TGGCCA	2 cut(s)	318, 493
MlyI	GAGTC	4 cut(s)	144, 627, 1000, 1175
MmeI	TCCRAC	2 cut(s)	691, 759
MnlI	CCTC	9 cut(s)	6, 133, 385, 408, 696, 777, 928, 957, 1089
Mox20I	TGGCCA	2 cut(s)	318, 493
MroXI	GAANNNNTTC	2 cut(s)	203, 545
MscI	TGGCCA	2 cut(s)	318, 493
MseI	TTAA	2 cut(s)	771, 825
MslI	CAYNNNNRTG	1 cut(s)	1135
Msp20I	TGGCCA	2 cut(s)	318, 493
MspI	CCGG	3 cut(s)	138, 435, 476
MspR9I	CCNGG	2 cut(s)	157, 921
MvaI	CCWGG	2 cut(s)	157, 921
MvnI	CGCG	1 cut(s)	539
NdeII	GATC	7 cut(s)	220, 303, 453, 564, 597, 877, 1198
NlaIII	CATG	2 cut(s)	1008, 1115
NmuCI	GTSAC	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PdmI	GAANNNNTTC	2 cut(s)	203, 545
PfeI	GAWTC	7 cut(s)	4, 284, 441, 556, 730, 801, 1108
PflFI	GACNNNGTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	920
PkrI	GCNGC	2 cut(s)	237, 661
Ple19I	CGATCG	1 cut(s)	456
PleI	GAGTC	4 cut(s)	144, 627, 999, 1175
PpsI	GAGTC	4 cut(s)	144, 627, 999, 1175
Psp6I	CCWGG	2 cut(s)	155, 919
PspGI	CCWGG	2 cut(s)	155, 919
PsuI	RGATCY	2 cut(s)	220, 564
PsyI	GACNNNGTC	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	456
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	1135
SaqAI	TTAA	2 cut(s)	771, 825
SatI	GCNGC	2 cut(s)	236, 660
Sau3AI	GATC	7 cut(s)	220, 303, 453, 564, 597, 877, 1198
SchI	GAGTC	4 cut(s)	144, 627, 1000, 1175
ScrFI	CCNGG	2 cut(s)	157, 921
SduI	GDGCHC	1 cut(s)	580
SfaNI	GCATC	2 cut(s)	476, 592
SfuI	TTCGAA	1 cut(s)	759
SmiMI	CAYNNNNRTG	1 cut(s)	1135
SmlI	CTYRAG	2 cut(s)	368, 1185
SmoI	CTYRAG	2 cut(s)	368, 1185
Sse9I	AATT	8 cut(s)	37, 406, 511, 523, 649, 680, 773, 1192
SsiI	CCGC	1 cut(s)	537
SspMI	CTAG	2 cut(s)	587, 1216
StyD4I	CCNGG	2 cut(s)	155, 919
TaiI	ACGT	3 cut(s)	119, 719, 824
TaqI	TCGA	9 cut(s)	35, 207, 342, 456, 549, 600, 675, 759, 804
TasI	AATT	8 cut(s)	37, 406, 511, 523, 649, 680, 773, 1192
TfiI	GAWTC	7 cut(s)	4, 284, 441, 556, 730, 801, 1108
Tru1I	TTAA	2 cut(s)	771, 825
Tru9I	TTAA	2 cut(s)	771, 825
TscAI	CASTG	1 cut(s)	1160
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	235, 659
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	6 cut(s)	57, 351, 505, 548, 908, 993
TspGWI	ACGGA	2 cut(s)	277, 296
TspRI	CASTG	1 cut(s)	1160
Tth111I	GACNNNGTC	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	920
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	5 cut(s)	37, 523, 649, 680, 1192
XmnI	GAANNNNTTC	2 cut(s)	203, 545
XspI	CTAG	2 cut(s)	587, 1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.