Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0016716

Physical Location & Seq

Genomic Coordinates Forward (+)

8706028 .. 8708121

Gene Structure 2094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G152100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGATTTCACGATCTACAAAAACACTTAAAAATCCAATCTTTTTTCGCTTAACTCATTCCACCTTCATCAAAAACCCATCTTTCTCCACACTCCCATCATCTTCCTCATCTGATATCCCAAAAAGGCTGCATCACAAAGACTGGTTAGCCCCAAATGAAGTCTTGCAAGTCTTCACGTCCCTCAGAGACCCCAACTCTGTCCGCACAGCCTTGGACCACTACTCCAAGCGCAAAGACTACAAACCCAATGAAGCTCTTTACACTTTGGTGGTCAACAAGCTTGCCCAAGCCCGCCTCTTTGACGCCATTGACAATGTCATGGCCAGGATCAAATCCGAAAGCAAATGCCGTTTGTCTGACAACTTCTTTCGCACTGTTATTAAGGCTTATGGCAATGTGGGTGGTCTTATAAACAAGGCCATCGAGACCCTTTATGATATGCCCAACTATGGTTGCTGGCCTTCTGTGAAAACATTCAACTTTGTGCTGCATTTGCTCGTTTCGACCAAGATGTTTGATGTTGTTCATGAGGTGTACTTGGAGGCTCCCAAGCTGGGTATTGAGATTGATGCTTGTTGCCTTAATATACTCATGAAGGGACTATGCGAGTATGGGAAATTGGATGCTGCACTTAAGGTGCTCGATGAATTTCCTAAGCAAAGGTGTATACCAAATGCGTTAACTTTTTCAACACTTATGCATGGTTTGTGTGTCAATGAGAAGGTGGATGAAGCTTTTGGGATGTTAAAGAGGATGGAAAATGAGGGTATAGATCCGGATACCATCACGTTTAATATATTGATAGCGGGGCTCAGGAAACAGGGGAGATTTGAAGAGGGGATTAAGCTTTTGGAGGAAATGAGAGGCAAGGGGTGTGATCCAAATGCAGGGTCTTATCAGGAGGTTTTGTATTGTTTTCTTGATGCACAGAGGTTTGTTGAGGCCAAAGAGTTTATGAGTTGGATGATCCCTAAGGGCGTTGGCCCGAGTTTTGTATCGTACAAGGCGTTGATTCATGGGCTGTGCAAAGAAAATCTGGTGCAGGATGTGGATTGGGTTTTAAAGCAGATGATAAGACAAGGCTTTCTTCCTAAGATGGGGATGTGGAGGCAGATCCTCAAAAGCATGTTTTCAGAGAAGAGCAGCCATTGTTGTATTTCCTATGAAGAAATTGTAGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

395

Amino Acids

44.98

Weight (kDa)

8.59

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14580
fragaria_vesca	FvH4_3g16970
malus_domestica	MD11G1276100.v1.1
prunus_persica	Prupe.4G152100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0028281
rosa_laevigata	RLG00000033079
rosa_multiflora	Rmu_sc0001571.1_g000002
rosa_roxburghii	Rroxscaffold_1G00051440
rosa_rugosa	Rorug05G0105500
rosa_samantha	Rh5AG199000 Rh5BG197500 Rh5CG217300 Rh5DG199200
rosa_wichuraiana	Rw5G018150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	667
AccIII	TCCGGA	1 cut(s)	775
AciI	CCGC	3 cut(s)	202, 292, 806
AclWI	GGATC	5 cut(s)	335, 767, 872, 961, 1108
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	647
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	2 cut(s)	536, 1001
AfiI	CCNNNNNNNGG	4 cut(s)	449, 554, 887, 1097
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	3 cut(s)	478, 690, 833
AjiI	CACGTC	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	323
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	5 cut(s)	254, 280, 553, 734, 847
AluI	AGCT	5 cut(s)	254, 280, 553, 734, 847
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	2 cut(s)	180, 419
AlwI	GGATC	5 cut(s)	335, 767, 872, 961, 1108
Ama87I	CYCGRG	1 cut(s)	985
Aor13HI	TCCGGA	1 cut(s)	775
AoxI	GGCC	5 cut(s)	321, 417, 458, 942, 982
ApeKI	GCWGC	4 cut(s)	127, 487, 626, 1143
ApoI	RAATTY	1 cut(s)	647
ArsI	GACNNNNNNTTYG	2 cut(s)	875, 907
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	214, 983
AvaI	CYCGRG	1 cut(s)	985
AvaII	GGWCC	1 cut(s)	214
AxyI	CCTNAGG	1 cut(s)	972
BalI	TGGCCA	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	813
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	4 cut(s)	114, 474, 613, 1155
BccI	CCATC	6 cut(s)	85, 103, 428, 748, 791, 1090
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	772
BcoDI	GTCTC	2 cut(s)	180, 419
BfrI	CTTAAG	1 cut(s)	632
BfuI	GTATCC	1 cut(s)	772
BisI	GCNGC	4 cut(s)	128, 488, 627, 1144
BlsI	GCNGC	4 cut(s)	129, 489, 628, 1145
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	985
BmgBI	CACGTC	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	214, 983
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	4 cut(s)	139, 559, 613, 913
BpiI	GAAGAC	1 cut(s)	163
Bpu10I	CCTNAGC	2 cut(s)	654, 812
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	2 cut(s)	180, 419
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	775
BsaXI	ACNNNNNCTCC	4 cut(s)	206, 236, 893, 923
Bsc4I	CCNNNNNNNGG	4 cut(s)	449, 554, 887, 1097
Bse1I	ACTGG	1 cut(s)	146
Bse21I	CCTNAGG	1 cut(s)	972
Bse3DI	GCAATG	1 cut(s)	400
BseAI	TCCGGA	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	7 cut(s)	628, 733, 747, 759, 969, 1051, 1107
BseLI	CCNNNNNNNGG	4 cut(s)	449, 554, 887, 1097
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	196, 826
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	114, 474, 613, 1155
BseYI	CCCAGC	1 cut(s)	553
BsgI	GTGCAG	2 cut(s)	612, 1061
BshFI	GGCC	5 cut(s)	323, 419, 460, 944, 984
BsiHKAI	GWGCWC	1 cut(s)	642
BsiHKCI	CYCGRG	1 cut(s)	985
BsiSI	CCGG	1 cut(s)	776
BslFI	GGGAC	2 cut(s)	163, 612
BslI	CCNNNNNNNGG	4 cut(s)	449, 554, 887, 1097
BsmAI	GTCTC	2 cut(s)	180, 419
BsmFI	GGGAC	2 cut(s)	163, 612
BsnI	GGCC	5 cut(s)	323, 419, 460, 944, 984
Bso31I	GGTCTC	2 cut(s)	180, 419
BsoBI	CYCGRG	1 cut(s)	985
Bsp1286I	GDGCHC	2 cut(s)	642, 813
Bsp13I	TCCGGA	1 cut(s)	775
Bsp143I	GATC	6 cut(s)	11, 327, 772, 877, 966, 1113
BspACI	CCGC	3 cut(s)	202, 292, 806
BspANI	GGCC	5 cut(s)	323, 419, 460, 944, 984
BspCNI	CTCAG	2 cut(s)	195, 825
BspEI	TCCGGA	1 cut(s)	775
BspHI	TCATGA	2 cut(s)	526, 591
BspLI	GGNNCC	1 cut(s)	546
BspPI	GGATC	5 cut(s)	335, 767, 872, 961, 1108
BspQI	GCTCTTC	1 cut(s)	1133
BspTI	CTTAAG	1 cut(s)	632
BspTNI	GGTCTC	2 cut(s)	180, 419
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	6 cut(s)	11, 327, 772, 877, 966, 1113
BssNAI	GTATAC	1 cut(s)	668
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	210
Bst1107I	GTATAC	1 cut(s)	668
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	2 cut(s)	828, 1133
BstACI	GRCGYC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	632
BstC8I	GCNNGC	3 cut(s)	282, 292, 458
BstDEI	CTNAG	5 cut(s)	182, 654, 812, 972, 1092
BstF5I	GGATG	7 cut(s)	628, 733, 747, 759, 969, 1051, 1107
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	6 cut(s)	14, 330, 775, 880, 969, 1116
BstMAI	GTCTC	2 cut(s)	180, 419
BstMBI	GATC	6 cut(s)	11, 327, 772, 877, 966, 1113
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	1129
BstSCI	CCNGG	1 cut(s)	323
BstV1I	GCAGC	4 cut(s)	114, 474, 613, 1155
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	772, 1113
BstYI	RGATCY	2 cut(s)	772, 1113
BstZ17I	GTATAC	1 cut(s)	668
Bsu36I	CCTNAGG	1 cut(s)	972
BsuI	GTATCC	1 cut(s)	772
BsuRI	GGCC	5 cut(s)	323, 419, 460, 944, 984
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	7 cut(s)	628, 733, 747, 759, 969, 1051, 1107
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	3 cut(s)	282, 292, 458
CciI	TCATGA	2 cut(s)	526, 591
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	214, 983
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	2 cut(s)	535, 1000
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	6 cut(s)	319, 527, 592, 701, 1016, 1126
CviQI	GTAC	2 cut(s)	535, 1000
DdeI	CTNAG	5 cut(s)	182, 654, 812, 972, 1092
DpnI	GATC	6 cut(s)	13, 329, 774, 879, 968, 1115
DpnII	GATC	6 cut(s)	11, 327, 772, 877, 966, 1113
DraI	TTTAAA	1 cut(s)	1062
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	828, 1133
EarI	CTCTTC	2 cut(s)	828, 1133
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	813
Eco31I	GGTCTC	2 cut(s)	180, 419
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	214
Eco81I	CCTNAGG	1 cut(s)	972
Eco88I	CYCGRG	1 cut(s)	985
EcoRII	CCWGG	1 cut(s)	323
EcoRV	GATATC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	702
EcoT38I	GRGCYC	1 cut(s)	813
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	6 cut(s)	322, 530, 595, 704, 1019, 1129
FalI	AAGNNNNNCTT	2 cut(s)	1071, 1103
FaqI	GGGAC	2 cut(s)	163, 612
FatI	CATG	6 cut(s)	318, 526, 591, 700, 1015, 1125
FauI	CCCGC	2 cut(s)	299, 799
FblI	GTMKAC	1 cut(s)	667
Fnu4HI	GCNGC	4 cut(s)	128, 488, 627, 1144
FokI	GGATG	7 cut(s)	635, 740, 754, 766, 976, 1058, 1114
FriOI	GRGCYC	1 cut(s)	813
Fsp4HI	GCNGC	4 cut(s)	128, 488, 627, 1144
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	4 cut(s)	128, 488, 627, 1144
GsaI	CCCAGC	1 cut(s)	557
HaeIII	GGCC	5 cut(s)	323, 419, 460, 944, 984
HapII	CCGG	1 cut(s)	776
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	6 cut(s)	322, 530, 595, 704, 1019, 1129
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	2 cut(s)	274, 681
HindII	GTYRAC	2 cut(s)	274, 681
HindIII	AAGCTT	3 cut(s)	278, 732, 845
HinfI	GANTC	1 cut(s)	1012
HpaI	GTTAAC	1 cut(s)	681
HpaII	CCGG	1 cut(s)	776
Hpy166II	GTNNAC	4 cut(s)	274, 535, 668, 681
Hpy188I	TCNGA	5 cut(s)	112, 185, 337, 358, 1135
Hpy188III	TCNNGA	8 cut(s)	9, 424, 527, 592, 776, 814, 899, 920
Hpy8I	GTNNAC	4 cut(s)	274, 535, 668, 681
HpyAV	CCTTC	4 cut(s)	73, 471, 589, 715
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	2 cut(s)	176, 788
HpyCH4V	TGCA	9 cut(s)	130, 166, 490, 629, 700, 887, 926, 1026, 1042
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	5 cut(s)	182, 654, 812, 972, 1092
HpySE526I	ACGT	2 cut(s)	176, 788
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	6 cut(s)	322, 530, 595, 704, 1019, 1129
HspAI	GCGC	1 cut(s)	229
Kpn2I	TCCGGA	1 cut(s)	775
KspAI	GTTAAC	1 cut(s)	681
Kzo9I	GATC	6 cut(s)	11, 327, 772, 877, 966, 1113
LguI	GCTCTTC	1 cut(s)	1133
LmnI	GCTCC	1 cut(s)	550
Lsp1109I	GCAGC	4 cut(s)	114, 474, 613, 1155
LweI	GCATC	4 cut(s)	139, 559, 613, 913
MaeII	ACGT	2 cut(s)	176, 788
MalI	GATC	6 cut(s)	13, 329, 774, 879, 968, 1115
MboI	GATC	6 cut(s)	11, 327, 772, 877, 966, 1113
MboII	GAAGA	6 cut(s)	93, 163, 845, 1079, 1150, 1178
MflI	RGATCY	2 cut(s)	772, 1113
MhlI	GDGCHC	2 cut(s)	642, 813
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	4 cut(s)	617, 647, 1170, 1180
MluNI	TGGCCA	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	941
Mox20I	TGGCCA	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	702
MroI	TCCGGA	1 cut(s)	775
MroXI	GAANNNNTTC	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	323
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	1 cut(s)	776
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	493
NdeII	GATC	6 cut(s)	11, 327, 772, 877, 966, 1113
NlaIII	CATG	6 cut(s)	322, 530, 595, 704, 1019, 1129
NlaIV	GGNNCC	1 cut(s)	546
NsiI	ATGCAT	1 cut(s)	702
NspI	RCATGY	1 cut(s)	1129
OliI	CACNNNNGTG	1 cut(s)	266
PagI	TCATGA	2 cut(s)	526, 591
PciSI	GCTCTTC	1 cut(s)	1133
PcsI	WCGNNNNNNNCGW	1 cut(s)	1004
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	1012
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	129, 489, 628, 1145
PsiI	TTATAA	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	2 cut(s)	214, 983
PsuI	RGATCY	2 cut(s)	772, 1113
PsyI	GACNNNGTC	1 cut(s)	314
RsaI	GTAC	2 cut(s)	536, 1001
RsaNI	GTAC	2 cut(s)	535, 1000
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	1133
SatI	GCNGC	4 cut(s)	128, 488, 627, 1144
Sau3AI	GATC	6 cut(s)	11, 327, 772, 877, 966, 1113
Sau96I	GGNCC	2 cut(s)	214, 983
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	642, 813
SfaNI	GCATC	4 cut(s)	139, 559, 613, 913
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	4 cut(s)	617, 647, 1170, 1180
SsiI	CCGC	3 cut(s)	202, 292, 806
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	2 cut(s)	179, 791
TaqI	TCGA	3 cut(s)	423, 503, 642
TasI	AATT	4 cut(s)	617, 647, 1170, 1180
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	1 cut(s)	1012
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	4 cut(s)	127, 487, 626, 1143
TspDTI	ATGAA	9 cut(s)	55, 171, 264, 515, 608, 660, 744, 1004, 1179
TspRI	CASTG	1 cut(s)	379
Tth111I	GACNNNGTC	1 cut(s)	314
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	1129
XmiI	GTMKAC	1 cut(s)	667
XmnI	GAANNNNTTC	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.