FvH4_3g16970

Pentatricopeptide repeat-containing protein At3g14580

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016716
Physical Location & Seq
Forward (+)
10706936 .. 10708484
1549 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16970.t1

Sequence Viewer

Length: 1200 bp
ATGATTTACCGCTCTACCAAAGTACTCAAACTCACCCATCCAGTCCTCCAATCCCTAACCCAATACTCCACCTTAAATCAAAACCCACCTTCCTCCTCCTCCTCCTCTCCCCAAATCCCCAAAAAGCTCCACCACAAAGACTGGCTCTCCCCAACCGAAGTCCTCCAAGTCTTCACATCCCTCCAAGACCCCACCTCACTCCTCCCCGCCCTCCACCACTACTCCACCCGCAAAGACTACAAACCCACCGAAGCCCTCTACACTCTAATCATCAACAAGCTCTCCCAAGCCCATCTCTTCGAGGCAATCGACAATGTCATGAACAGAATCAAATCCGAGAGGAAATGCCGGCTGTCGGATGACTTCTTCCGCGGCGTCATCAAGAACTACGGCAATGTGGGTGGCTACATAAACAAGGCAATGCAGACGCTTTTCGACATGCCCGGCGGTTTCGGGTGCTGGCCGTCTGTCAAGACATTCAACCTTGTCCTGCATATTCTGGTTTCGACGAAGATGTTTGATGTTGTTCATGAGGTTTACTTGATGTCGGCCAAGTTGGGTGTTGAGGTTGATGCGTGTAGTTTGAATATAATTGTCAAGGGGCTGTGTGAAAGTGGGAAGGTTGATGGTGCACTCCAGGTGCTCGACGAATTTCCCCACCAGAAATGCGAGCCGAATGCGCTGACGTTTTCGACGCTGATGCATGGGCTCTGTGTGATTGGGAAGGTGGATGAGGCTTTCGGGTTGCTGAGGAGAATGGAAAATGAAGGTATTGATCCGGATTCGGTTACGTTTAACATCTTGATAGCAGGGCTGAGGAGACAGAAGAGATATGATGAGGGCATTGAGCTTTTGGAGCAAATGAAGCTCAAGGGTTGCGCGCCGAATCCGGCTTCTTATCAGGAGGTTTTGTATTGTTTGCTTGATGCGCAGAGGTTTGTTGAGGCAAAAGAGTTCATGATTCGGATGGTTTCAAAGCGTGTTGGTCCGAGTTTCGTGTCATACAAGCAACTGATTCAGGGGTTGTGTAAGGAGAATAAGGTGGAGGAGCTGGACTGGGTTTTGAGGCAGATGACGCGGCAAGGGTTTGTGCCGAAGATGGGTATGTGGAGGCAGATTATCAGAAGTGTGTTTCCGGAAAAGAGCAACAACCATCATTGTGTTTCTTGTGAAGAAACTATAGATGAGTTGATCACTTGA

Protein Analysis

400

Amino Acids

45.4

Weight (kDa)

8.38

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 163 - 285 3.2e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 187 - 217 7.4e-07 PPR repeat
PPR_2 PF13041 191 - 238 1e-11 PPR repeat family
PPR_1 PF12854 223 - 254 1.5e-10 PPR repeat
PPR PF01535 229 - 258 1.9e-06 PPR repeat
PPR_2 PF13041 232 - 272 1e-11 PPR repeat family
PPR_3 PF13812 249 - 302 2.5e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 257 - 289 2.2e-07 PPR repeat
PPR_2 PF13041 260 - 301 2e-10 PPR repeat family
PPR PF01535 263 - 293 7.5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14580
fragaria_vesca FvH4_3g16970
malus_domestica MD11G1276100.v1.1
prunus_persica Prupe.4G152100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0028281
rosa_laevigata RLG00000033079
rosa_multiflora Rmu_sc0001571.1_g000002
rosa_roxburghii Rroxscaffold_1G00051440
rosa_rugosa Rorug05G0105500
rosa_samantha Rh5AG199000 Rh5BG197500 Rh5CG217300 Rh5DG199200
rosa_wichuraiana Rw5G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 930
AccBSI CCGCTC 1 cut(s) 12
AccII CGCG 3 cut(s) 372, 881, 1078
AccIII TCCGGA 2 cut(s) 778, 1135
AciI CCGC 7 cut(s) 10, 207, 229, 370, 372, 447, 1078
AclWI GGATC 1 cut(s) 770
AcoI YGGCCR 2 cut(s) 461, 549
AcsI RAATTY 1 cut(s) 650
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 2 cut(s) 355, 1100
AgsI TTSAA 3 cut(s) 481, 586, 975
AjnI CCWGG 1 cut(s) 636
AluBI AGCT 5 cut(s) 127, 280, 850, 868, 1051
AluI AGCT 5 cut(s) 127, 280, 850, 868, 1051
Alw21I GWGCWC 2 cut(s) 634, 645
Alw26I GTCTC 1 cut(s) 814
Alw44I GTGCAC 1 cut(s) 630
AlwI GGATC 1 cut(s) 770
Aor13HI TCCGGA 2 cut(s) 778, 1135
AoxI GGCC 2 cut(s) 461, 549
ApaLI GTGCAC 1 cut(s) 630
ApoI RAATTY 1 cut(s) 650
AspLEI GCGC 4 cut(s) 682, 881, 883, 931
AspS9I GGNCC 1 cut(s) 986
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 986
BaeGI GKGCMC 1 cut(s) 634
BanII GRGCYC 1 cut(s) 711
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 2 cut(s) 634, 645
BbvCI CCTCAGC 2 cut(s) 749, 815
BccI CCATC 6 cut(s) 45, 300, 620, 961, 1093, 1161
BceAI ACGGC 2 cut(s) 406, 448
BcgI CGANNNNNNTGC 4 cut(s) 659, 682, 693, 716
BciT130I CCWGG 1 cut(s) 638
BclI TGATCA 1 cut(s) 1191
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 814
BfmI CTRYAG 1 cut(s) 1179
BisI GCNGC 2 cut(s) 373, 1079
BlsI GCNGC 2 cut(s) 374, 1080
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 2 cut(s) 444, 638
Bme18I GGWCC 1 cut(s) 986
BmgT120I GGNCC 1 cut(s) 986
BmrFI CCNGG 2 cut(s) 444, 638
BmrI ACTGGG 1 cut(s) 1066
BmsI GCATC 3 cut(s) 562, 690, 916
BmuI ACTGGG 1 cut(s) 1066
BpiI GAAGAC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 620
Bpu10I CCTNAGC 2 cut(s) 749, 815
BpuEI CTTGAG 1 cut(s) 854
BpuMI CCSGG 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 370
BsaWI WCCGGW 2 cut(s) 778, 1135
BsaXI ACNNNNNCTCC 8 cut(s) 131, 161, 206, 236, 266, 296, 896, 926
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 1100
Bse118I RCCGGY 1 cut(s) 348
Bse1I ACTGG 3 cut(s) 41, 146, 1061
Bse3DI GCAATG 2 cut(s) 400, 426
BseAI TCCGGA 2 cut(s) 778, 1135
BseBI CCWGG 1 cut(s) 638
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 5 cut(s) 37, 176, 364, 736, 972
BseLI CCNNNNNNNGG 2 cut(s) 355, 1100
BseMI GCAATG 2 cut(s) 400, 426
BseMII CTCAG 2 cut(s) 740, 806
BseNI ACTGG 3 cut(s) 41, 146, 1061
BsePI GCGCGC 1 cut(s) 879
BseRI GAGGAG 8 cut(s) 85, 88, 91, 94, 191, 766, 832, 1061
BseSI GKGCMC 1 cut(s) 634
Bsh1236I CGCG 3 cut(s) 372, 881, 1078
BshFI GGCC 2 cut(s) 463, 551
BsiHKAI GWGCWC 2 cut(s) 634, 645
BsiSI CCGG 5 cut(s) 349, 444, 779, 890, 1136
BslI CCNNNNNNNGG 2 cut(s) 355, 1100
BsmAI GTCTC 1 cut(s) 814
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 2 cut(s) 463, 551
Bsp1286I GDGCHC 3 cut(s) 634, 645, 711
Bsp13I TCCGGA 2 cut(s) 778, 1135
Bsp143I GATC 2 cut(s) 775, 1191
BspACI CCGC 7 cut(s) 10, 207, 229, 370, 372, 447, 1078
BspANI GGCC 2 cut(s) 463, 551
BspCNI CTCAG 2 cut(s) 741, 807
BspEI TCCGGA 2 cut(s) 778, 1135
BspFNI CGCG 3 cut(s) 372, 881, 1078
BspHI TCATGA 3 cut(s) 318, 529, 957
BspPI GGATC 1 cut(s) 770
BsrBI CCGCTC 1 cut(s) 12
BsrDI GCAATG 2 cut(s) 400, 426
BsrFI RCCGGY 1 cut(s) 348
BsrI ACTGG 3 cut(s) 41, 146, 1061
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 370
BssHII GCGCGC 1 cut(s) 879
BssMI GATC 2 cut(s) 775, 1191
BssNI GRCGYC 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 638
Bst6I CTCTTC 2 cut(s) 302, 821
BstACI GRCGYC 1 cut(s) 375
BstC8I GCNNGC 4 cut(s) 350, 461, 671, 881
BstDEI CTNAG 2 cut(s) 749, 815
BstDSI CCRYGG 1 cut(s) 370
BstF5I GGATG 5 cut(s) 37, 176, 364, 736, 972
BstFNI CGCG 3 cut(s) 372, 881, 1078
BstHHI GCGC 4 cut(s) 682, 881, 883, 931
BstKTI GATC 2 cut(s) 778, 1194
BstMAI GTCTC 1 cut(s) 814
BstMBI GATC 2 cut(s) 775, 1191
BstMWI GCNNNNNNNGC 5 cut(s) 679, 856, 865, 928, 1075
BstNI CCWGG 1 cut(s) 638
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 2 cut(s) 442, 636
BstSFI CTRYAG 1 cut(s) 1179
BstSLI GKGCMC 1 cut(s) 634
BstUI CGCG 3 cut(s) 372, 881, 1078
BstV2I GAAGAC 1 cut(s) 163
BsuRI GGCC 2 cut(s) 463, 551
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 5 cut(s) 37, 176, 364, 736, 972
Cac8I GCNNGC 4 cut(s) 350, 461, 671, 881
CciI TCATGA 3 cut(s) 318, 529, 957
CfoI GCGC 4 cut(s) 682, 881, 883, 931
Cfr10I RCCGGY 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 986
Cfr42I CCGCGG 1 cut(s) 373
CseI GACGC 4 cut(s) 364, 436, 703, 1084
Csp6I GTAC 1 cut(s) 23
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 5 cut(s) 319, 439, 530, 704, 958
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 2 cut(s) 749, 815
DpnI GATC 2 cut(s) 777, 1193
DpnII GATC 2 cut(s) 775, 1191
EaeI YGGCCR 2 cut(s) 461, 549
Eam1104I CTCTTC 2 cut(s) 302, 821
EarI CTCTTC 2 cut(s) 302, 821
Eco24I GRGCYC 1 cut(s) 711
Eco47I GGWCC 1 cut(s) 986
EcoRII CCWGG 1 cut(s) 636
EcoT22I ATGCAT 1 cut(s) 705
EcoT38I GRGCYC 1 cut(s) 711
FaeI CATG 5 cut(s) 322, 442, 533, 707, 961
FatI CATG 5 cut(s) 318, 438, 529, 703, 957
FauI CCCGC 2 cut(s) 214, 236
FbaI TGATCA 1 cut(s) 1191
Fnu4HI GCNGC 2 cut(s) 373, 1079
FokI GGATG 5 cut(s) 24, 163, 371, 743, 979
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 2 cut(s) 373, 1079
FspI TGCGCA 1 cut(s) 930
GlaI GCGC 4 cut(s) 681, 880, 882, 930
GluI GCNGC 2 cut(s) 373, 1079
GsuI CTGGAG 1 cut(s) 620
HaeIII GGCC 2 cut(s) 463, 551
HapII CCGG 5 cut(s) 349, 444, 779, 890, 1136
HgaI GACGC 4 cut(s) 364, 436, 703, 1084
HhaI GCGC 4 cut(s) 682, 881, 883, 931
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 5 cut(s) 322, 442, 533, 707, 961
Hin6I GCGC 4 cut(s) 680, 879, 881, 929
HinP1I GCGC 4 cut(s) 680, 879, 881, 929
HinfI GANTC 5 cut(s) 327, 782, 886, 961, 1015
HpaII CCGG 5 cut(s) 349, 444, 779, 890, 1136
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 538, 632
Hpy188I TCNGA 5 cut(s) 337, 358, 966, 990, 1124
Hpy188III TCNNGA 9 cut(s) 319, 382, 472, 530, 779, 802, 902, 958, 1136
Hpy8I GTNNAC 2 cut(s) 538, 632
Hpy99I CGWCG 3 cut(s) 511, 650, 697
HpyAV CCTTC 4 cut(s) 99, 613, 718, 761
HpyCH4IV ACGT 2 cut(s) 686, 791
HpyCH4V TGCA 4 cut(s) 424, 493, 632, 703
HpyF10VI GCNNNNNNNGC 5 cut(s) 679, 856, 865, 928, 1075
HpyF3I CTNAG 2 cut(s) 749, 815
HpySE526I ACGT 2 cut(s) 686, 791
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 5 cut(s) 322, 442, 533, 707, 961
HspAI GCGC 4 cut(s) 680, 879, 881, 929
Kpn2I TCCGGA 2 cut(s) 778, 1135
KroI GCCGGC 1 cut(s) 348
KroNI GCCGGC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 1191
KspI CCGCGG 1 cut(s) 373
Kzo9I GATC 2 cut(s) 775, 1191
LmnI GCTCC 3 cut(s) 132, 856, 1048
LweI GCATC 3 cut(s) 562, 690, 916
MaeII ACGT 2 cut(s) 686, 791
MaeIII GTNAC 1 cut(s) 787
MalI GATC 2 cut(s) 777, 1193
MbiI CCGCTC 1 cut(s) 12
MboI GATC 2 cut(s) 775, 1191
MboII GAAGA 7 cut(s) 163, 289, 358, 523, 838, 1108, 1184
MhlI GDGCHC 3 cut(s) 634, 645, 711
MluCI AATT 2 cut(s) 591, 650
MmeI TCCRAC 1 cut(s) 336
Mph1103I ATGCAT 1 cut(s) 705
MroI TCCGGA 2 cut(s) 778, 1135
MroNI GCCGGC 1 cut(s) 348
MseI TTAA 2 cut(s) 74, 795
MslI CAYNNNNRTG 1 cut(s) 1158
MspA1I CMGCKG 1 cut(s) 372
MspI CCGG 5 cut(s) 349, 444, 779, 890, 1136
MspR9I CCNGG 2 cut(s) 444, 638
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 1 cut(s) 638
MvnI CGCG 3 cut(s) 372, 881, 1078
MwoI GCNNNNNNNGC 5 cut(s) 679, 856, 865, 928, 1075
NaeI GCCGGC 1 cut(s) 350
NciI CCSGG 1 cut(s) 444
NdeII GATC 2 cut(s) 775, 1191
NgoMIV GCCGGC 1 cut(s) 348
NlaIII CATG 5 cut(s) 322, 442, 533, 707, 961
NsbI TGCGCA 1 cut(s) 930
NsiI ATGCAT 1 cut(s) 705
NspI RCATGY 1 cut(s) 442
PagI TCATGA 3 cut(s) 318, 529, 957
PauI GCGCGC 1 cut(s) 879
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 682
PdiI GCCGGC 1 cut(s) 350
PfeI GAWTC 5 cut(s) 327, 782, 886, 961, 1015
PflFI GACNNNGTC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 374, 1080
Psp6I CCWGG 1 cut(s) 636
PspGI CCWGG 1 cut(s) 636
PspPI GGNCC 1 cut(s) 986
PsyI GACNNNGTC 1 cut(s) 314
PteI GCGCGC 1 cut(s) 879
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 1158
SacII CCGCGG 1 cut(s) 373
SaqAI TTAA 2 cut(s) 74, 795
SatI GCNGC 2 cut(s) 373, 1079
Sau3AI GATC 2 cut(s) 775, 1191
Sau96I GGNCC 1 cut(s) 986
ScaI AGTACT 1 cut(s) 24
ScrFI CCNGG 2 cut(s) 444, 638
SduI GDGCHC 3 cut(s) 634, 645, 711
SfaNI GCATC 3 cut(s) 562, 690, 916
SfcI CTRYAG 1 cut(s) 1179
Sfr303I CCGCGG 1 cut(s) 373
SgrBI CCGCGG 1 cut(s) 373
SinI GGWCC 1 cut(s) 986
SmiMI CAYNNNNRTG 1 cut(s) 1158
SmlI CTYRAG 1 cut(s) 869
SmoI CTYRAG 1 cut(s) 869
Sse9I AATT 2 cut(s) 591, 650
SsiI CCGC 7 cut(s) 10, 207, 229, 370, 372, 447, 1078
StyD4I CCNGG 2 cut(s) 442, 636
TaiI ACGT 2 cut(s) 689, 794
TaqI TCGA 6 cut(s) 300, 309, 435, 506, 645, 692
TasI AATT 2 cut(s) 591, 650
TatI WGTACW 1 cut(s) 22
TauI GCSGC 2 cut(s) 375, 1081
TfiI GAWTC 5 cut(s) 327, 782, 886, 961, 1015
Tru1I TTAA 2 cut(s) 74, 795
Tru9I TTAA 2 cut(s) 74, 795
TspDTI ATGAA 5 cut(s) 335, 518, 780, 878, 946
Tth111I GACNNNGTC 1 cut(s) 314
VneI GTGCAC 1 cut(s) 630
VpaK11BI GGWCC 1 cut(s) 986
XapI RAATTY 1 cut(s) 650
XceI RCATGY 1 cut(s) 442
ZrmI AGTACT 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.