RLG00000033079

Pentatricopeptide repeat-containing protein At3g14580

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016716
Physical Location & Seq
Forward (+)
23063615 .. 23064823
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033079

Sequence Viewer

Length: 1104 bp
ATGATATCACGTTCTACCAAATTTCTCACCCATCCAATCCGTCAATCACTAACCCAAAGCCCATCTTTCTCCACACTCCCATCTTCCTTCTCCCAAATCCCAAAAAAGCTCCACCACAAAGACTGGCTATCCCCAAACGAAGTTCTCCAAGTCTTCACATCCCTCCAAGACCCCAACTCAGTCCTCACAGCCCTCGACCACTACTCCAAGCGCAAGGACTACAAGCCCAATGAAGCCCTCTACACCTTGATCATCGACAAGCTCGCCCGAGCCCACCTCTTCGACGCCGTGGACAATGTCATGAACAGAATCAAATCCGAAAGGAAATGCCGGTTATCCGATGACTTCTTCCGCGGTGTTATCAAGAACTACGGCAATGTGGGTGGTCACATTAAGAAGGCGATACAGACCCTTTACGATATGCCCAGTTTCGGGTGCTGGCCGAGTGTGAAGACCTTCAATTTCGTTCTGCATTTGCTGGTCTCGACCAAGATGTTTGATGTTGTTCATCAGGTTTATTTGATGTCGCCGCAATTGGGTGTCGAGATTGATGCTTGTTGTTTGAATATAATCATCAAAGGGCTGTGTGAAAGTGGGAAGCTGGATAGTGCACTCCAGGTGCTCGACGAATTTCCCCAGCAGAAATGTGAGCCGAACGCGCTGACGTTTTCGACGCTGATGCATGGGCTCTGTGTCAATGGGAAAGTGGATGAGGCTTTTGGGTTGCTGAAGAGGATGGAAAATGAGGGAGTTGAGCCGGATTCGGTCACGTTTAACATATTGATAGCAGGGCTGAGGAAACAGAAGAGATATGATGAGGGCATTGAGCTTTTGGAGCAAATGAAGCTCAAGGGGTGTGCTCCAAATCCAGCTTCCTATCAGGAGGTTTTGTATTGTTTGCTTGATGCAGAGAGGTTCGCTGAGGCAAAACAGTTCATAATTCGGATGGTTTCGAAGCGTGTTGGTCCGAGTTTCGTGTCGTACAAGCAGCTGATTCAGGGGTTGTGTAAAGAAAATAGGGTGGAGGATCTGGATTGGGTTTTGAGGCAGATGATGCGACAAGGTTTTGTGCCAAAGATGGTCTGTATTTTAGTCATTAGCTGA

Protein Analysis

368

Amino Acids

41.81

Weight (kDa)

8.75

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 179 - 228 9.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 180 - 210 7.6e-08 PPR repeat
PPR_2 PF13041 184 - 231 6.9e-13 PPR repeat family
TPR_24 PF23276 204 - 295 7.5e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 216 - 247 1.8e-11 PPR repeat
PPR PF01535 222 - 251 8e-08 PPR repeat
PPR_3 PF13812 222 - 262 5.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 225 - 266 1.8e-13 PPR repeat family
PPR_3 PF13812 242 - 295 3.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 250 - 282 9.6e-08 PPR repeat
PPR_2 PF13041 255 - 294 3e-09 PPR repeat family
PPR PF01535 256 - 286 4.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14580
fragaria_vesca FvH4_3g16970
malus_domestica MD11G1276100.v1.1
prunus_persica Prupe.4G152100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0028281
rosa_laevigata RLG00000033079
rosa_multiflora Rmu_sc0001571.1_g000002
rosa_roxburghii Rroxscaffold_1G00051440
rosa_rugosa Rorug05G0105500
rosa_samantha Rh5AG199000 Rh5BG197500 Rh5CG217300 Rh5DG199200
rosa_wichuraiana Rw5G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 354, 659
AciI CCGC 3 cut(s) 352, 354, 530
AclWI GGATC 1 cut(s) 1035
AcoI YGGCCR 1 cut(s) 440
AcsI RAATTY 2 cut(s) 20, 629
AcuI CTGAAG 1 cut(s) 749
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 1 cut(s) 983
AfiI CCNNNNNNNGG 3 cut(s) 431, 432, 536
AgsI TTSAA 2 cut(s) 460, 565
AjnI CCWGG 1 cut(s) 615
AjuI GAANNNNNNNTTGG 2 cut(s) 856, 888
AluBI AGCT 8 cut(s) 109, 262, 601, 829, 847, 872, 991, 1101
AluI AGCT 8 cut(s) 109, 262, 601, 829, 847, 872, 991, 1101
Alw21I GWGCWC 3 cut(s) 613, 624, 862
Alw26I GTCTC 1 cut(s) 487
Alw44I GTGCAC 1 cut(s) 609
AlwI GGATC 1 cut(s) 1035
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 1 cut(s) 440
ApaLI GTGCAC 1 cut(s) 609
ApeKI GCWGC 1 cut(s) 988
ApoI RAATTY 2 cut(s) 20, 629
Asp700I GAANNNNTTC 1 cut(s) 455
AspLEI GCGC 2 cut(s) 213, 661
AspS9I GGNCC 1 cut(s) 965
AsuHPI GGTGA 1 cut(s) 19
AsuII TTCGAA 1 cut(s) 953
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 1 cut(s) 965
BaeGI GKGCMC 1 cut(s) 613
BanII GRGCYC 2 cut(s) 274, 690
BbsI GAAGAC 2 cut(s) 145, 458
Bbv12I GWGCWC 3 cut(s) 613, 624, 862
BbvCI CCTCAGC 2 cut(s) 794, 921
BbvI GCAGC 1 cut(s) 1000
BccI CCATC 6 cut(s) 39, 70, 88, 730, 940, 1072
BceAI ACGGC 2 cut(s) 272, 388
BcgI CGANNNNNNTGC 4 cut(s) 533, 567, 661, 695
BciT130I CCWGG 1 cut(s) 617
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 487
BisI GCNGC 2 cut(s) 530, 989
BlsI GCNGC 2 cut(s) 531, 990
Bme1390I CCNGG 1 cut(s) 617
Bme18I GGWCC 1 cut(s) 965
BmeT110I CYCGRG 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 965
BmrFI CCNGG 1 cut(s) 617
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 4 cut(s) 541, 669, 895, 1044
BmuI ACTGGG 1 cut(s) 420
BpiI GAAGAC 2 cut(s) 145, 458
BplI GAGNNNNNCTC 2 cut(s) 261, 293
BpmI CTGGAG 1 cut(s) 599
Bpu10I CCTNAGC 2 cut(s) 794, 921
Bpu14I TTCGAA 1 cut(s) 953
BpuEI CTTGAG 1 cut(s) 833
BsaHI GRCGYC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 288, 352
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 875, 905
Bsc4I CCNNNNNNNGG 3 cut(s) 431, 432, 536
Bse118I RCCGGY 1 cut(s) 330
Bse1I ACTGG 2 cut(s) 128, 426
Bse3DI GCAATG 1 cut(s) 382
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 2 cut(s) 288, 352
BseGI GGATG 5 cut(s) 31, 158, 715, 741, 951
BseLI CCNNNNNNNGG 3 cut(s) 431, 432, 536
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 3 cut(s) 192, 785, 912
BseNI ACTGG 2 cut(s) 128, 426
BseSI GKGCMC 1 cut(s) 613
BseXI GCAGC 1 cut(s) 1000
BseYI CCCAGC 1 cut(s) 636
Bsh1236I CGCG 2 cut(s) 354, 659
BshFI GGCC 1 cut(s) 442
BsiHKAI GWGCWC 3 cut(s) 613, 624, 862
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 2 cut(s) 331, 758
BslI CCNNNNNNNGG 3 cut(s) 431, 432, 536
BsmAI GTCTC 1 cut(s) 487
BsnI GGCC 1 cut(s) 442
Bso31I GGTCTC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 953
Bsp1286I GDGCHC 5 cut(s) 274, 613, 624, 690, 862
Bsp143I GATC 2 cut(s) 249, 1027
BspACI CCGC 3 cut(s) 352, 354, 530
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 3 cut(s) 191, 786, 913
BspFNI CGCG 2 cut(s) 354, 659
BspHI TCATGA 1 cut(s) 300
BspPI GGATC 1 cut(s) 1035
BspT104I TTCGAA 1 cut(s) 953
BspTNI GGTCTC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 330
BsrI ACTGG 2 cut(s) 128, 426
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 2 cut(s) 288, 352
BssMI GATC 2 cut(s) 249, 1027
BssNI GRCGYC 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 1 cut(s) 933
Bst6I CTCTTC 3 cut(s) 284, 725, 800
BstACI GRCGYC 1 cut(s) 285
BstAPI GCANNNNNTGC 1 cut(s) 1054
BstBI TTCGAA 1 cut(s) 953
BstC8I GCNNGC 2 cut(s) 264, 440
BstDEI CTNAG 3 cut(s) 178, 794, 921
BstDSI CCRYGG 2 cut(s) 288, 352
BstF5I GGATG 5 cut(s) 31, 158, 715, 741, 951
BstFNI CGCG 2 cut(s) 354, 659
BstHHI GCGC 2 cut(s) 213, 661
BstKTI GATC 2 cut(s) 252, 1030
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 2 cut(s) 249, 1027
BstMWI GCNNNNNNNGC 4 cut(s) 658, 835, 844, 1054
BstNI CCWGG 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 615
BstSLI GKGCMC 1 cut(s) 613
BstUI CGCG 2 cut(s) 354, 659
BstV1I GCAGC 1 cut(s) 1000
BstV2I GAAGAC 2 cut(s) 145, 458
BstX2I RGATCY 1 cut(s) 1027
BstYI RGATCY 1 cut(s) 1027
BsuRI GGCC 1 cut(s) 442
BtgI CCRYGG 2 cut(s) 288, 352
BtsCI GGATG 5 cut(s) 31, 158, 715, 741, 951
Cac8I GCNNGC 2 cut(s) 264, 440
CciI TCATGA 1 cut(s) 300
CfoI GCGC 2 cut(s) 213, 661
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 965
Cfr42I CCGCGG 1 cut(s) 355
CseI GACGC 2 cut(s) 293, 682
Csp6I GTAC 1 cut(s) 982
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 2 cut(s) 301, 683
CviQI GTAC 1 cut(s) 982
DdeI CTNAG 3 cut(s) 178, 794, 921
DpnI GATC 2 cut(s) 251, 1029
DpnII GATC 2 cut(s) 249, 1027
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 3 cut(s) 284, 725, 800
EarI CTCTTC 3 cut(s) 284, 725, 800
Eco24I GRGCYC 2 cut(s) 274, 690
Eco31I GGTCTC 1 cut(s) 487
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 965
Eco57I CTGAAG 1 cut(s) 749
Eco88I CYCGRG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 615
EcoRV GATATC 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 684
EcoT38I GRGCYC 2 cut(s) 274, 690
FaeI CATG 2 cut(s) 304, 686
FaiI YATR 7 cut(s) 302, 422, 569, 684, 779, 813, 938
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FatI CATG 2 cut(s) 300, 682
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 530, 989
FokI GGATG 5 cut(s) 18, 145, 722, 748, 958
FriOI GRGCYC 2 cut(s) 274, 690
Fsp4HI GCNGC 2 cut(s) 530, 989
GlaI GCGC 2 cut(s) 212, 660
GluI GCNGC 2 cut(s) 530, 989
GsaI CCCAGC 1 cut(s) 640
GsuI CTGGAG 1 cut(s) 599
HaeIII GGCC 1 cut(s) 442
HapII CCGG 2 cut(s) 331, 758
HgaI GACGC 2 cut(s) 293, 682
HhaI GCGC 2 cut(s) 213, 661
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 2 cut(s) 304, 686
Hin6I GCGC 2 cut(s) 211, 659
HinP1I GCGC 2 cut(s) 211, 659
HinfI GANTC 3 cut(s) 309, 761, 994
HpaII CCGG 2 cut(s) 331, 758
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 292, 611
Hpy188I TCNGA 4 cut(s) 319, 340, 945, 969
Hpy188III TCNNGA 6 cut(s) 301, 364, 484, 544, 881, 1031
Hpy8I GTNNAC 2 cut(s) 292, 611
Hpy99I CGWCG 3 cut(s) 287, 629, 676
HpyAV CCTTC 3 cut(s) 97, 391, 466
HpyCH4III ACNGT 1 cut(s) 933
HpyCH4IV ACGT 3 cut(s) 10, 665, 770
HpyCH4V TGCA 4 cut(s) 472, 611, 682, 908
HpyF10VI GCNNNNNNNGC 4 cut(s) 658, 835, 844, 1054
HpyF3I CTNAG 3 cut(s) 178, 794, 921
HpySE526I ACGT 3 cut(s) 10, 665, 770
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 2 cut(s) 304, 686
HspAI GCGC 2 cut(s) 211, 659
Ksp22I TGATCA 1 cut(s) 249
KspI CCGCGG 1 cut(s) 355
Kzo9I GATC 2 cut(s) 249, 1027
LmnI GCTCC 3 cut(s) 114, 835, 865
Lsp1109I GCAGC 1 cut(s) 1000
LweI GCATC 4 cut(s) 541, 669, 895, 1044
MaeII ACGT 3 cut(s) 10, 665, 770
MaeIII GTNAC 2 cut(s) 386, 766
MalI GATC 2 cut(s) 251, 1029
MboI GATC 2 cut(s) 249, 1027
MboII GAAGA 7 cut(s) 75, 145, 271, 340, 463, 742, 817
MfeI CAATTG 1 cut(s) 533
MflI RGATCY 1 cut(s) 1027
MhlI GDGCHC 5 cut(s) 274, 613, 624, 690, 862
MluCI AATT 5 cut(s) 20, 460, 533, 629, 939
Mph1103I ATGCAT 1 cut(s) 684
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 2 cut(s) 393, 774
MspA1I CMGCKG 2 cut(s) 354, 991
MspI CCGG 2 cut(s) 331, 758
MspR9I CCNGG 1 cut(s) 617
MunI CAATTG 1 cut(s) 533
MvaI CCWGG 1 cut(s) 617
MvnI CGCG 2 cut(s) 354, 659
MwoI GCNNNNNNNGC 4 cut(s) 658, 835, 844, 1054
NdeII GATC 2 cut(s) 249, 1027
NlaIII CATG 2 cut(s) 304, 686
NmeAIII GCCGAG 1 cut(s) 468
NmuCI GTSAC 2 cut(s) 386, 766
NsiI ATGCAT 1 cut(s) 684
NspV TTCGAA 1 cut(s) 953
PagI TCATGA 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 3 cut(s) 309, 761, 994
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 2 cut(s) 531, 990
Psp6I CCWGG 1 cut(s) 615
PspFI CCCAGC 1 cut(s) 636
PspGI CCWGG 1 cut(s) 615
PspPI GGNCC 1 cut(s) 965
PsuI RGATCY 1 cut(s) 1027
PsyI GACNNNGTC 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 991
RsaI GTAC 1 cut(s) 983
RsaNI GTAC 1 cut(s) 982
SacII CCGCGG 1 cut(s) 355
SaqAI TTAA 2 cut(s) 393, 774
SatI GCNGC 2 cut(s) 530, 989
Sau3AI GATC 2 cut(s) 249, 1027
Sau96I GGNCC 1 cut(s) 965
ScrFI CCNGG 1 cut(s) 617
SduI GDGCHC 5 cut(s) 274, 613, 624, 690, 862
SfaNI GCATC 4 cut(s) 541, 669, 895, 1044
Sfr303I CCGCGG 1 cut(s) 355
SfuI TTCGAA 1 cut(s) 953
SgrBI CCGCGG 1 cut(s) 355
SinI GGWCC 1 cut(s) 965
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
Sse9I AATT 5 cut(s) 20, 460, 533, 629, 939
SsiI CCGC 3 cut(s) 352, 354, 530
StyD4I CCNGG 1 cut(s) 615
TaaI ACNGT 1 cut(s) 933
TaiI ACGT 3 cut(s) 13, 668, 773
TaqI TCGA 8 cut(s) 195, 255, 282, 485, 543, 624, 671, 953
TaqII GACCGA 1 cut(s) 754
TasI AATT 5 cut(s) 20, 460, 533, 629, 939
TauI GCSGC 1 cut(s) 532
TfiI GAWTC 3 cut(s) 309, 761, 994
Tru1I TTAA 2 cut(s) 393, 774
Tru9I TTAA 2 cut(s) 393, 774
TseFI GTSAC 2 cut(s) 386, 766
TseI GCWGC 1 cut(s) 988
Tsp45I GTSAC 2 cut(s) 386, 766
TspDTI ATGAA 5 cut(s) 246, 317, 497, 857, 925
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 296
VneI GTGCAC 1 cut(s) 609
VpaK11BI GGWCC 1 cut(s) 965
XapI RAATTY 2 cut(s) 20, 629
XmnI GAANNNNTTC 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.