AT3G14760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015339
Physical Location & Seq
Forward (+)
4956349 .. 4957306
958 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14760.1

Sequence Viewer

Length: 507 bp
ATGGAAGCCTTGTGGAAGTTGGAGGAGAAACTGAAGCTAACTACGAAAGAAGCCGTTGTGATCTTGGTCGGAACAGCGGCTGCGGTAACGCTACTCTGCATAGCCGCAGCGTTTCTCAACCGCAATTCTCGAGGGAAGCAAGTAGCAGACGCAGAGTGGGCGTCTGAAACAGCGTTTGGGTCAAGGACTATGGAGGAAAAGAGGAAATGTAAGTGGAGCAAAGTGAAAAGAACGTTGATGGGTTCTTTTTGTTGGAGCTCTGCTGCGAAGTGGATGGAGATGGAAACAAGGCGGCAGCCACCATTGCTTGCGGTTAAAGAAAGGAGTCTTAATGCGGTTGATCCGGTTTGGCAGCGACCAATTCTGATGGGTGAGAAATGTGAATTGCCTCGGTTTAGCGGCCTTATATTGTATGATGAATGTGGCCATCCGCGTCATCATCCTCAGCTTCAAGAAAAAGTAAAACAGAGTTCTGTGGTAAGAACAACTCTGAGAGATTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

19.15

Weight (kDa)

9.54

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14760
fragaria_vesca FvH4_3g17620
malus_domestica MD03G1250700.v1.1 MD11G1270900.v1.1
prunus_persica Prupe.4G155600_v2.0.a1
pyrus_communis pycom03g19840 pycom11g23960
rosa_chinensis RchiOBHm_Chr5g0029351
rosa_laevigata RLG00000033157
rosa_multiflora Rmu_sc0000566.1_g000002
rosa_roxburghii Rroxscaffold_1G00050650
rosa_rugosa Rorug05G0113400
rosa_samantha Rh5AG205400 Rh5BG203900 Rh5CG225800
rosa_wichuraiana Rw5G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 433
AciI CCGC 9 cut(s) 77, 83, 105, 121, 292, 311, 335, 399, 431
AclI AACGTT 1 cut(s) 233
AclWI GGATC 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 161
AgsI TTSAA 1 cut(s) 452
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
AluBI AGCT 3 cut(s) 37, 258, 448
AluI AGCT 3 cut(s) 37, 258, 448
Alw21I GWGCWC 1 cut(s) 260
AlwI GGATC 1 cut(s) 335
AlwNI CAGNNNCTG 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 2 cut(s) 400, 424
ApeKI GCWGC 5 cut(s) 80, 107, 263, 295, 352
AsuHPI GGTGA 1 cut(s) 383
AvaI CYCGRG 1 cut(s) 129
BalI TGGCCA 1 cut(s) 426
BanII GRGCYC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 260
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 5 cut(s) 67, 119, 250, 307, 364
BccI CCATC 5 cut(s) 232, 268, 274, 361, 435
BceAI ACGGC 1 cut(s) 38
BisI GCNGC 9 cut(s) 78, 81, 105, 108, 264, 293, 296, 353, 400
BlsI GCNGC 9 cut(s) 79, 82, 106, 109, 265, 294, 297, 354, 401
BmeT110I CYCGRG 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 389
BsaWI WCCGGW 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 3 cut(s) 279, 427, 439
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 2 cut(s) 458, 482
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 5 cut(s) 67, 119, 250, 307, 364
Bsh1236I CGCG 1 cut(s) 433
BshFI GGCC 2 cut(s) 402, 426
BsiHKAI GWGCWC 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 344
BsnI GGCC 2 cut(s) 402, 426
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 60, 340
BspACI CCGC 9 cut(s) 77, 83, 105, 121, 292, 311, 335, 399, 431
BspANI GGCC 2 cut(s) 402, 426
BspCNI CTCAG 2 cut(s) 457, 483
BspFNI CGCG 1 cut(s) 433
BspPI GGATC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 2 cut(s) 60, 340
BssNI GRCGYC 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 444, 491
BstF5I GGATG 3 cut(s) 279, 427, 439
BstFNI CGCG 1 cut(s) 433
BstKTI GATC 2 cut(s) 63, 343
BstMBI GATC 2 cut(s) 60, 340
BstMWI GCNNNNNNNGC 2 cut(s) 158, 304
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 5 cut(s) 67, 119, 250, 307, 364
BsuRI GGCC 2 cut(s) 402, 426
BtsCI GGATG 3 cut(s) 279, 427, 439
Cac8I GCNNGC 1 cut(s) 309
CaiI CAGNNNCTG 1 cut(s) 80
CseI GACGC 3 cut(s) 150, 158, 422
DdeI CTNAG 2 cut(s) 444, 491
DpnI GATC 2 cut(s) 62, 342
DpnII GATC 2 cut(s) 60, 340
EaeI YGGCCR 1 cut(s) 424
Ecl136II GAGCTC 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 260
FaiI YATR 4 cut(s) 101, 191, 407, 414
Fnu4HI GCNGC 9 cut(s) 78, 81, 105, 108, 264, 293, 296, 353, 400
FokI GGATG 3 cut(s) 286, 414, 426
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 9 cut(s) 78, 81, 105, 108, 264, 293, 296, 353, 400
GluI GCNGC 9 cut(s) 78, 81, 105, 108, 264, 293, 296, 353, 400
HaeIII GGCC 2 cut(s) 402, 426
HapII CCGG 1 cut(s) 344
HgaI GACGC 3 cut(s) 150, 158, 422
Hin1I GRCGYC 1 cut(s) 161
HinfI GANTC 1 cut(s) 325
HpaII CCGG 1 cut(s) 344
HphI GGTGA 1 cut(s) 383
Hpy188I TCNGA 4 cut(s) 71, 166, 366, 492
Hpy188III TCNNGA 2 cut(s) 129, 452
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 304
HpyF3I CTNAG 2 cut(s) 444, 491
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 161
Kzo9I GATC 2 cut(s) 60, 340
LmnI GCTCC 2 cut(s) 216, 255
LpnPI CCDG 1 cut(s) 357
Lsp1109I GCAGC 5 cut(s) 67, 119, 250, 307, 364
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 62, 342
MboI GATC 2 cut(s) 60, 340
MhlI GDGCHC 1 cut(s) 260
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 3 cut(s) 124, 360, 383
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 1 cut(s) 334
MmeI TCCRAC 2 cut(s) 49, 233
MnlI CCTC 6 cut(s) 16, 125, 187, 195, 399, 453
Mox20I TGGCCA 1 cut(s) 426
MscI TGGCCA 1 cut(s) 426
MseI TTAA 2 cut(s) 315, 330
Msp20I TGGCCA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 344
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 2 cut(s) 158, 304
NdeII GATC 2 cut(s) 60, 340
PaeR7I CTCGAG 1 cut(s) 129
PkrI GCNGC 9 cut(s) 79, 82, 106, 109, 265, 294, 297, 354, 401
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 260
Psp1406I AACGTT 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 315, 330
SatI GCNGC 9 cut(s) 78, 81, 105, 108, 264, 293, 296, 353, 400
Sau3AI GATC 2 cut(s) 60, 340
SchI GAGTC 1 cut(s) 334
SduI GDGCHC 1 cut(s) 260
SetI ASST 4 cut(s) 39, 236, 260, 450
Sfr274I CTCGAG 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 3 cut(s) 124, 360, 383
SsiI CCGC 9 cut(s) 77, 83, 105, 121, 292, 311, 335, 399, 431
SstI GAGCTC 1 cut(s) 260
TaiI ACGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 130
TasI AATT 3 cut(s) 124, 360, 383
TauI GCSGC 4 cut(s) 80, 107, 295, 402
Tru1I TTAA 2 cut(s) 315, 330
Tru9I TTAA 2 cut(s) 315, 330
TseI GCWGC 5 cut(s) 80, 107, 263, 295, 352
TspDTI ATGAA 1 cut(s) 432
XhoI CTCGAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.