FvH4_3g17620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015339
Physical Location & Seq
Forward (+)
11216916 .. 11218409
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17620.t1

Sequence Viewer

Length: 558 bp
ATGGATGCTTTGTGGGAGATAGAAGACAAGCTGAAGCTATCAACCCAACAAGCATTTCTTCTCTTGGTGTCTGCCGGCTTTGCGGTTATCGGTATCTGCATGGCTTTGACTGTGCTAAGAAAGAAGGCTCAGAGGAAGCACCAGCAGCAGCTTGTGGTGATGGGGCAAGAGGAGACTAATGGTGCATTAGGGCATAAGTGGTCGGAGCCACGCTGTGGTTGGGGATCGATAAAGAGGGCGCTGGTGGGCTCGGTGCGGTGGAGTAAGGCGAGCAAGTGGGGGGAGGAGGGAAGAGGAGGGAGCTGGAGGGAGTCGACGCCGGCCGGACCGCTGCTGGAGAAGAGGATTGGGGTGGAGATGGGGCGGCATAGCCATAACTCGGAGTCACCTGTTTGGCAAAGGCCTATACTTATGGGGGAGAAGTGTGAGCTTCCGAGGTTCAGTGGACTTATTCTATATGATGAGAGAGGCCAGCCTCTTTGTGATTCCCACCAGGAAATTAGAATCCAGGAGAAAGCAGCTCCTGTTGCGAGAACGACTCTGAGGGACTTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.78

Weight (kDa)

9.32

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14760
fragaria_vesca FvH4_3g17620
malus_domestica MD03G1250700.v1.1 MD11G1270900.v1.1
prunus_persica Prupe.4G155600_v2.0.a1
pyrus_communis pycom03g19840 pycom11g23960
rosa_chinensis RchiOBHm_Chr5g0029351
rosa_laevigata RLG00000033157
rosa_multiflora Rmu_sc0000566.1_g000002
rosa_roxburghii Rroxscaffold_1G00050650
rosa_rugosa Rorug05G0113400
rosa_samantha Rh5AG205400 Rh5BG203900 Rh5CG225800
rosa_wichuraiana Rw5G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 215
AccI GTMKAC 1 cut(s) 314
AciI CCGC 4 cut(s) 83, 256, 329, 364
AclWI GGATC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 321
AcuI CTGAAG 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 317
AdeI CACNNNGTG 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 215, 379
AjnI CCWGG 2 cut(s) 492, 507
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 6 cut(s) 31, 37, 151, 303, 430, 521
AluI AGCT 6 cut(s) 31, 37, 151, 303, 430, 521
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 232
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 3 cut(s) 321, 401, 469
ApeKI GCWGC 4 cut(s) 145, 148, 331, 518
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 169, 378
AvaII GGWCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 4 cut(s) 157, 160, 318, 530
BccI CCATC 2 cut(s) 154, 352
BciT130I CCWGG 2 cut(s) 494, 509
BcoDI GTCTC 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 242
BisI GCNGC 5 cut(s) 146, 149, 332, 365, 519
BlsI GCNGC 5 cut(s) 147, 150, 333, 366, 520
Bme1390I CCNGG 2 cut(s) 494, 509
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 2 cut(s) 494, 509
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 523, 555
BpmI CTGGAG 2 cut(s) 325, 356
Bsa29I ATCGAT 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 434
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 379
Bse118I RCCGGY 2 cut(s) 74, 319
BseBI CCWGG 2 cut(s) 494, 509
BseCI ATCGAT 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 215, 379
BseMII CTCAG 2 cut(s) 143, 533
BseRI GAGGAG 3 cut(s) 185, 299, 309
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 4 cut(s) 157, 160, 318, 530
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 3 cut(s) 323, 403, 471
BshVI ATCGAT 1 cut(s) 227
BsiEI CGRYCG 1 cut(s) 324
BsiSI CCGG 3 cut(s) 75, 320, 324
BslI CCNNNNNNNGG 2 cut(s) 215, 379
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 3 cut(s) 323, 403, 471
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 224
BspACI CCGC 4 cut(s) 83, 256, 329, 364
BspANI GGCC 3 cut(s) 323, 403, 471
BspCNI CTCAG 2 cut(s) 142, 534
BspDI ATCGAT 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 1 cut(s) 232
BsrFI RCCGGY 2 cut(s) 74, 319
BssAI RCCGGY 2 cut(s) 74, 319
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 1 cut(s) 224
BssNI GRCGYC 1 cut(s) 317
Bst2UI CCWGG 2 cut(s) 494, 509
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 286, 335
BstACI GRCGYC 1 cut(s) 317
BstC8I GCNNGC 4 cut(s) 76, 271, 321, 473
BstDEI CTNAG 3 cut(s) 116, 129, 542
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 227
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 1 cut(s) 224
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 3 cut(s) 80, 145, 527
BstNI CCWGG 2 cut(s) 494, 509
BstSCI CCNGG 2 cut(s) 492, 507
BstV1I GCAGC 4 cut(s) 157, 160, 318, 530
BstV2I GAAGAC 1 cut(s) 30
BstZI CGGCCG 1 cut(s) 321
Bsu15I ATCGAT 1 cut(s) 227
BsuRI GGCC 3 cut(s) 323, 403, 471
BsuTUI ATCGAT 1 cut(s) 227
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 448
Cac8I GCNNGC 4 cut(s) 76, 271, 321, 473
CaiI CAGNNNCTG 1 cut(s) 524
CfoI GCGC 1 cut(s) 241
Cfr10I RCCGGY 2 cut(s) 74, 319
Cfr13I GGNCC 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 227
CpoI CGGWCCG 1 cut(s) 326
CseI GACGC 1 cut(s) 325
CspI CGGWCCG 1 cut(s) 326
CviAII CATG 1 cut(s) 100
DdeI CTNAG 3 cut(s) 116, 129, 542
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
DraIII CACNNNGTG 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 321
EagI CGGCCG 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 286, 335
EarI CTCTTC 2 cut(s) 286, 335
EclXI CGGCCG 1 cut(s) 321
Eco147I AGGCCT 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 326
Eco52I CGGCCG 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 492, 507
EcoT38I GRGCYC 1 cut(s) 251
FaeI CATG 1 cut(s) 103
FaiI YATR 8 cut(s) 101, 195, 369, 375, 407, 413, 457, 459
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 1 cut(s) 99
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 5 cut(s) 146, 149, 332, 365, 519
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 5 cut(s) 146, 149, 332, 365, 519
GlaI GCGC 1 cut(s) 240
GluI GCNGC 5 cut(s) 146, 149, 332, 365, 519
GsuI CTGGAG 2 cut(s) 325, 356
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 3 cut(s) 323, 403, 471
HapII CCGG 3 cut(s) 75, 320, 324
HgaI GACGC 1 cut(s) 325
HhaI GCGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 5 cut(s) 311, 383, 485, 504, 538
HpaII CCGG 3 cut(s) 75, 320, 324
HphI GGTGA 2 cut(s) 169, 378
Hpy166II GTNNAC 2 cut(s) 315, 446
Hpy188I TCNGA 5 cut(s) 132, 205, 382, 435, 543
Hpy8I GTNNAC 2 cut(s) 315, 446
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 99, 185
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 145, 527
HpyF3I CTNAG 3 cut(s) 116, 129, 542
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 1 cut(s) 239
KroI GCCGGC 2 cut(s) 74, 319
KroNI GCCGGC 2 cut(s) 76, 321
Kzo9I GATC 1 cut(s) 224
LmnI GCTCC 3 cut(s) 205, 300, 526
Lsp1109I GCAGC 4 cut(s) 157, 160, 318, 530
MaeIII GTNAC 1 cut(s) 384
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 4 cut(s) 35, 50, 303, 352
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 1 cut(s) 498
MlyI GAGTC 3 cut(s) 320, 392, 532
MmeI TCCRAC 1 cut(s) 183
MroNI GCCGGC 2 cut(s) 74, 319
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 3 cut(s) 75, 320, 324
MspR9I CCNGG 2 cut(s) 494, 509
MvaI CCWGG 2 cut(s) 494, 509
MwoI GCNNNNNNNGC 3 cut(s) 80, 145, 527
NaeI GCCGGC 2 cut(s) 76, 321
NdeII GATC 1 cut(s) 224
NgoMIV GCCGGC 2 cut(s) 74, 319
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 384
PceI AGGCCT 1 cut(s) 403
PdiI GCCGGC 2 cut(s) 76, 321
PfeI GAWTC 2 cut(s) 485, 504
PflMI CCANNNNNTGG 1 cut(s) 215
PfoI TCCNGGA 1 cut(s) 507
PkrI GCNGC 5 cut(s) 147, 150, 333, 366, 520
PleI GAGTC 3 cut(s) 319, 391, 532
PpsI GAGTC 3 cut(s) 319, 391, 532
Psp6I CCWGG 2 cut(s) 492, 507
PspGI CCWGG 2 cut(s) 492, 507
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 326
PstNI CAGNNNCTG 1 cut(s) 524
Rsr2I CGGWCCG 1 cut(s) 326
RsrII CGGWCCG 1 cut(s) 326
SalI GTCGAC 1 cut(s) 313
SatI GCNGC 5 cut(s) 146, 149, 332, 365, 519
Sau3AI GATC 1 cut(s) 224
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 3 cut(s) 320, 392, 532
ScrFI CCNGG 2 cut(s) 494, 509
SduI GDGCHC 1 cut(s) 251
SetI ASST 8 cut(s) 33, 39, 153, 305, 391, 432, 440, 523
SinI GGWCC 1 cut(s) 326
Sse9I AATT 1 cut(s) 498
SseBI AGGCCT 1 cut(s) 403
SsiI CCGC 4 cut(s) 83, 256, 329, 364
StuI AGGCCT 1 cut(s) 403
StyD4I CCNGG 2 cut(s) 492, 507
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 227, 314
TasI AATT 1 cut(s) 498
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 2 cut(s) 485, 504
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 4 cut(s) 145, 148, 331, 518
Tsp45I GTSAC 1 cut(s) 384
TspRI CASTG 1 cut(s) 448
Van91I CCANNNNNTGG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.