Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015339

Physical Location & Seq

Genomic Coordinates Reverse (-)

26937308 .. 26938649

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g23960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCAGAATTACTGCATGCACCTTTCTACGTATAAGAAATCATCATTCTTTTTCTACCTTCCCAAATATTCCCCATACAAAACCATCAAGAATCTAACTTACTTTGTTGCTGCTGCACACCATATAAGGAGACAAGGGAATTCCATGGAAGCCTTGTGGAATTTAGAAGACAAGTGGAAGATCTCAACCCAACAAGCATTTCTCCTCTTAGTTTCCGCTGCCTTCGCAGTCATCGGTCTTTGCATGGCGGTGACGGTTTTGCTAAAGAAGGCTCAGAGGAAGCAGGAGCAGCAGCTTGTGATGAGCAGCCAGCGAGAGGCTGTAGTAGGACAACCGAAATGGTCTGAGCCGAGTTGTGGTTGGGGGTCGATAACGAGAGCGTTGGTGAGCTCGGTGCGGTGGAGCAGAAGGAGCAAGTGGGAGGAGAGGCGGGGCGGGAGCTGGAGAGAGACGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCTGGACAAAAGGGTTGAGGTTGAAGTGGGGTGGCGGAGCCATAACTCGGACTCTCCTGTGTGGCAGAGACCTATACTTATGGGGGAGAAGTGTGAGCTTCCTAGATTCAGTGGGCTTATTCTCTATGATGAAAGAGGTCGTCCTCTGTGCGACTCCCACAAGGAAAGTAGAAACCAGGAAAATACTGGTGGTGTTGGCAGAACAACTTTGAGGGACTTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

27.13

Weight (kDa)

9.8

Isoelectric Point (pI)

69.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14760
fragaria_vesca	FvH4_3g17620
malus_domestica	MD03G1250700.v1.1 MD11G1270900.v1.1
prunus_persica	Prupe.4G155600_v2.0.a1
pyrus_communis	pycom03g19840 pycom11g23960
rosa_chinensis	RchiOBHm_Chr5g0029351
rosa_laevigata	RLG00000033157
rosa_multiflora	Rmu_sc0000566.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050650
rosa_rugosa	Rorug05G0113400
rosa_samantha	Rh5AG205400 Rh5BG203900 Rh5CG225800
rosa_wichuraiana	Rw5G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	139, 160
AcyI	GRCGYC	1 cut(s)	452
AfiI	CCNNNNNNNGG	3 cut(s)	316, 356, 529
AgsI	TTSAA	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	657
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	4 cut(s)	295, 390, 441, 580
AluI	AGCT	4 cut(s)	295, 390, 441, 580
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	3 cut(s)	124, 443, 544
ApoI	RAATTY	2 cut(s)	139, 160
AsuHPI	GGTGA	2 cut(s)	262, 397
BanII	GRGCYC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	392
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	659
BcoDI	GTCTC	3 cut(s)	124, 443, 544
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	2 cut(s)	321, 704
BglII	AGATCT	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	659
BmiI	GGNNCC	1 cut(s)	521
BmrFI	CCNGG	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	463
BsaAI	YACGTR	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 356, 529
Bse1I	ACTGG	1 cut(s)	673
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	3 cut(s)	316, 356, 529
BseMII	CTCAG	2 cut(s)	287, 336
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	2 cut(s)	194, 437
BsgI	GTGCAG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	392
BslI	CCNNNNNNNGG	3 cut(s)	316, 356, 529
BsmAI	GTCTC	3 cut(s)	124, 443, 544
BsmBI	CGTCTC	1 cut(s)	443
Bso31I	GGTCTC	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	144
BspCNI	CTCAG	2 cut(s)	286, 337
BspLI	GGNNCC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	452
BstBAI	YACGTR	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	17, 311
BstDEI	CTNAG	3 cut(s)	208, 273, 345
BstDSI	CCRYGG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	3 cut(s)	124, 443, 544
BstMBI	GATC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	657
BstSFI	CTRYAG	2 cut(s)	321, 704
BstSNI	TACGTA	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	2 cut(s)	17, 311
CseI	GACGC	1 cut(s)	460
CviAII	CATG	3 cut(s)	16, 145, 244
DdeI	CTNAG	3 cut(s)	208, 273, 345
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	532
Ecl136II	GAGCTC	1 cut(s)	390
Eco105I	TACGTA	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	544
Eco53kI	GAGCTC	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	3 cut(s)	19, 148, 247
FatI	CATG	3 cut(s)	15, 144, 243
FauI	CCCGC	2 cut(s)	423, 428
FriOI	GRGCYC	1 cut(s)	392
FspBI	CTAG	1 cut(s)	585
GsuI	CTGGAG	1 cut(s)	463
HgaI	GACGC	1 cut(s)	460
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	3 cut(s)	19, 148, 247
HinfI	GANTC	4 cut(s)	91, 533, 588, 635
HphI	GGTGA	2 cut(s)	262, 397
Hpy188I	TCNGA	3 cut(s)	276, 346, 532
Hpy188III	TCNNGA	1 cut(s)	88
HpyAV	CCTTC	4 cut(s)	68, 232, 262, 402
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	5 cut(s)	4, 15, 19, 116, 243
HpyF3I	CTNAG	3 cut(s)	208, 273, 345
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	3 cut(s)	19, 148, 247
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	5 cut(s)	286, 402, 411, 438, 519
LpnPI	CCDG	8 cut(s)	269, 323, 427, 470, 552, 644, 654, 671
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	179, 190
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	3 cut(s)	7, 139, 160
MlyI	GAGTC	2 cut(s)	527, 629
MnlI	CCTC	9 cut(s)	215, 270, 310, 415, 420, 493, 611, 636, 687
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	6 cut(s)	218, 457, 463, 469, 475, 481
MspR9I	CCNGG	1 cut(s)	659
MvaI	CCWGG	1 cut(s)	659
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	3 cut(s)	19, 148, 247
NlaIV	GGNNCC	1 cut(s)	521
NmeAIII	GCCGAG	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	19
PaeI	GCATGC	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	91, 588
PleI	GAGTC	2 cut(s)	527, 629
PpsI	GAGTC	2 cut(s)	527, 629
Ppu21I	YACGTR	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	392
Sau3AI	GATC	1 cut(s)	180
SchI	GAGTC	2 cut(s)	527, 629
ScrFI	CCNGG	1 cut(s)	659
SduI	GDGCHC	1 cut(s)	392
SfcI	CTRYAG	2 cut(s)	321, 704
SmiMI	CAYNNNNRTG	1 cut(s)	248
SnaBI	TACGTA	1 cut(s)	30
SphI	GCATGC	1 cut(s)	19
Sse9I	AATT	3 cut(s)	7, 139, 160
SspI	AATATT	1 cut(s)	68
SspMI	CTAG	1 cut(s)	585
SstI	GAGCTC	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	657
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	368
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	3 cut(s)	7, 139, 160
TauI	GCSGC	5 cut(s)	457, 463, 469, 475, 481
TfiI	GAWTC	2 cut(s)	91, 588
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	627
TspRI	CASTG	1 cut(s)	598
XapI	RAATTY	2 cut(s)	139, 160
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	665
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.