Rorug05G0113400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015339
Physical Location & Seq
Reverse (-)
10118566 .. 10120325
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0113400.1

Sequence Viewer

Length: 1539 bp
ATGGGTAGCCTCGAATTGCACCATGGTCCAGTAGAAAACAACTGTGATCCCCCCATGGCTAACCCTCTGGATCCGGAAGAATTCAGGAGACAAGGCCACATAATGATAGATTTTATTGCAGACTATTACAAGAACATAGAGAAGTACCCGGTTCTAAGCCAAGTTCAACCAGGTTATCTCAAAAAGCGCCTGCCGGAGTCTGCGCCATACAACCCCGAGCCGATTGAAACCATCCTCCAAGATGTGCGAGATCATATTGTTCCTGGTATAACACATTGGCAAAGCCCTAGCTACTTTGGCTACTTTCCTTCAAGTGGTAGCATCGCAGGGTTTCTCGGCGAAATGCTTAGCACTGGATTCAATGTGGTTGGATTCAACTGGATGTCATCGCCTGCTGCAACTGAGCTAGAAAGCATAGTCATGGATTGGCTTGGAAACATGCTTCAACTTCCCAAGTCTTTCCTTTTCTCTGGCAACGGTGGTGGTGTGTTACAAGGGACTACTTGTGAGGCCATTGTTTGCACCATGGCTGCTGCTAGAGACGAAATGCTAAGCCGAATTGGTAAAGACAACATTGGAAGGCTAGTTGTATATGGGTCAGATCAAACACATAGTGCACTTAAAAAAGCCTCCCAAATTGTTGGAATCCATCCAAACAATTTCAGGGCCATCAACACTACACAATCCACAAATTTTGCACTATCACCTGAGTTGCTGAGATCCACAATTTGTTCTGACATAGAAAAAGGGTTAGTTCCTTTGTTTCTATGTGCCACGATGGGAACAACTGCAACCACTTCTGTTGATCCATTAGGGGGACTGTGTGATGTAGCAAAAGATTATTGCATATGGGTTCATGTCGATGCAGCATACGCAGGAAGTGTCTGCATTTGTCCAGAGTTTCAGCATTTCATTGAAGGCGTTGAGGGAGCAAATTCATTCAGTTTCAATGCACATAAATGGTTCTTCACAACTCTAGATTGTTGTTGCCTTTGGGTTAAGAACCCAACTGCATTGATCGATTCCTTGTCAACGAATCCAGAGTTTTTAAGGAACAAAGCCAGTGATTCAAAGCAAGTGGTGGACTACAAAGACTGGCAAATAGCACTGAGCCGAAGGTTCCGCGCATTGAAATTATGGCTCGTGCTAAGAAGCTATGGAGTAGATAATCTCAGAAACTTTCTCAGAAGCCATGTGAAAATGGCCGAGGTCTTTGAAAGGCTTGTGCGAGAGAACAAATGGTTTGAGGTTGTTGTGCCTAGGAATTTCGCCATGGTCTGTTTTAGGATTTCTCCATCAGCAATTACCGAAGCTCCAGGTGATGATGATGGAAGTACTGCTATGATAAACGAGGTCAATTGCAAGCTATTGGAGGCGATCAATGCATCAGGTGATGTATACATGACTCATGCTGTGGTTGGAGGCATGTGTGTGTTACGGTGCGCAATTGGAGCAACTCTGACCGAGGAAAAGCACATACACAGGGCCTGGAAGGTAGTGCAAGACCATGCAGATGCCATCCTGAGCACGTATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

512

Amino Acids

56.83

Weight (kDa)

5.69

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 57 - 430 2.1e-112 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14760
fragaria_vesca FvH4_3g17620
malus_domestica MD03G1250700.v1.1 MD11G1270900.v1.1
prunus_persica Prupe.4G155600_v2.0.a1
pyrus_communis pycom03g19840 pycom11g23960
rosa_chinensis RchiOBHm_Chr5g0029351
rosa_laevigata RLG00000033157
rosa_multiflora Rmu_sc0000566.1_g000002
rosa_roxburghii Rroxscaffold_1G00050650
rosa_rugosa Rorug05G0113400
rosa_samantha Rh5AG205400 Rh5BG203900 Rh5CG225800
rosa_wichuraiana Rw5G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1444
AccI GTMKAC 1 cut(s) 1398
AccII CGCG 1 cut(s) 1125
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 1 cut(s) 1123
AclWI GGATC 5 cut(s) 41, 65, 78, 714, 800
AcoI YGGCCR 1 cut(s) 1203
AcsI RAATTY 4 cut(s) 80, 691, 934, 1264
AdeI CACNNNGTG 1 cut(s) 614
AfaI GTAC 2 cut(s) 146, 1336
AfiI CCNNNNNNNGG 2 cut(s) 314, 815
AjnI CCWGG 4 cut(s) 169, 262, 1315, 1487
AluBI AGCT 5 cut(s) 291, 406, 1155, 1313, 1366
AluI AGCT 5 cut(s) 291, 406, 1155, 1313, 1366
Alw21I GWGCWC 2 cut(s) 619, 1529
Alw26I GTCTC 2 cut(s) 82, 534
Alw44I GTGCAC 1 cut(s) 615
AlwI GGATC 5 cut(s) 41, 65, 78, 714, 800
AlwNI CAGNNNCTG 1 cut(s) 1488
Ama87I CYCGRG 1 cut(s) 215
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 5 cut(s) 94, 510, 666, 1203, 1485
ApaLI GTGCAC 1 cut(s) 615
ApeKI GCWGC 4 cut(s) 395, 530, 533, 866
ApoI RAATTY 4 cut(s) 80, 691, 934, 1264
AspA2I CCTAGG 1 cut(s) 1259
AspLEI GCGC 4 cut(s) 189, 205, 1127, 1445
AspS9I GGNCC 3 cut(s) 26, 666, 1485
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 696, 1331, 1403
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 26
AvrII CCTAGG 1 cut(s) 1259
BaeGI GKGCMC 1 cut(s) 619
BamHI GGATCC 1 cut(s) 70
BauI CACGAG 1 cut(s) 1142
Bbv12I GWGCWC 2 cut(s) 619, 1529
BbvI GCAGC 4 cut(s) 382, 517, 520, 878
BccI CCATC 7 cut(s) 239, 657, 677, 772, 1303, 1322, 1526
BciT130I CCWGG 4 cut(s) 171, 264, 1317, 1489
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 82, 534
BfaI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
BfoI RGCGCY 1 cut(s) 190
BisI GCNGC 4 cut(s) 396, 531, 534, 867
BlnI CCTAGG 1 cut(s) 1259
BlpI GCTNAGC 2 cut(s) 347, 551
BlsI GCNGC 4 cut(s) 397, 532, 535, 868
BmcAI AGTACT 1 cut(s) 1336
Bme1390I CCNGG 5 cut(s) 149, 171, 264, 1317, 1489
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 3 cut(s) 26, 666, 1485
BmiI GGNNCC 2 cut(s) 72, 1121
BmrFI CCNGG 5 cut(s) 149, 171, 264, 1317, 1489
BmsI GCATC 4 cut(s) 330, 853, 1394, 1504
BpmI CTGGAG 1 cut(s) 1299
Bpu10I CCTNAGC 1 cut(s) 1523
Bpu1102I GCTNAGC 2 cut(s) 347, 551
BpuMI CCSGG 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 1020
BsaAI YACGTR 1 cut(s) 1530
BsaJI CCNNGG 7 cut(s) 22, 54, 525, 1206, 1259, 1272, 1464
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 1297, 1327
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 815
Bse1I ACTGG 5 cut(s) 29, 358, 383, 1062, 1100
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 4 cut(s) 171, 264, 1317, 1489
BseCI ATCGAT 1 cut(s) 1020
BseDI CCNNGG 7 cut(s) 22, 54, 525, 1206, 1259, 1272, 1464
BseGI GGATG 4 cut(s) 231, 387, 649, 1518
BseLI CCNNNNNNNGG 2 cut(s) 314, 815
BseMII CTCAG 7 cut(s) 393, 699, 707, 1100, 1186, 1198, 1514
BseNI ACTGG 5 cut(s) 29, 358, 383, 1062, 1100
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 4 cut(s) 382, 517, 520, 878
Bsh1236I CGCG 1 cut(s) 1125
BshFI GGCC 5 cut(s) 96, 512, 668, 1205, 1487
BshVI ATCGAT 1 cut(s) 1020
BsiHKAI GWGCWC 2 cut(s) 619, 1529
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 3 cut(s) 74, 149, 194
BslFI GGGAC 2 cut(s) 511, 831
BslI CCNNNNNNNGG 2 cut(s) 314, 815
BsmAI GTCTC 2 cut(s) 82, 534
BsmBI CGTCTC 1 cut(s) 534
BsmFI GGGAC 2 cut(s) 511, 831
BsnI GGCC 5 cut(s) 96, 512, 668, 1205, 1487
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 619, 1529
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
Bsp1720I GCTNAGC 2 cut(s) 347, 551
Bsp19I CCATGG 4 cut(s) 22, 54, 525, 1272
BspACI CCGC 1 cut(s) 1123
BspANI GGCC 5 cut(s) 96, 512, 668, 1205, 1487
BspCNI CTCAG 7 cut(s) 394, 700, 708, 1101, 1185, 1197, 1515
BspDI ATCGAT 1 cut(s) 1020
BspEI TCCGGA 1 cut(s) 73
BspFNI CGCG 1 cut(s) 1125
BspLI GGNNCC 2 cut(s) 72, 1121
BspPI GGATC 5 cut(s) 41, 65, 78, 714, 800
BsrI ACTGG 5 cut(s) 29, 358, 383, 1062, 1100
BssECI CCNNGG 7 cut(s) 22, 54, 525, 1206, 1259, 1272, 1464
BssMI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
BssNAI GTATAC 1 cut(s) 1399
BssSI CACGAG 1 cut(s) 1142
BssT1I CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
Bst1107I GTATAC 1 cut(s) 1399
Bst2BI CACGAG 1 cut(s) 1142
Bst2UI CCWGG 4 cut(s) 171, 264, 1317, 1489
Bst4CI ACNGT 4 cut(s) 44, 479, 822, 1440
BstBAI YACGTR 1 cut(s) 1530
BstC8I GCNNGC 3 cut(s) 191, 393, 1364
BstDSI CCRYGG 4 cut(s) 22, 54, 525, 1272
BstF5I GGATG 4 cut(s) 231, 387, 649, 1518
BstFNI CGCG 1 cut(s) 1125
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 4 cut(s) 189, 205, 1127, 1445
BstKTI GATC 8 cut(s) 49, 73, 253, 604, 722, 808, 1020, 1380
BstMAI GTCTC 2 cut(s) 82, 534
BstMBI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
BstMWI GCNNNNNNNGC 4 cut(s) 297, 872, 1382, 1451
BstNI CCWGG 4 cut(s) 171, 264, 1317, 1489
BstNSI RCATGY 2 cut(s) 442, 1429
BstSCI CCNGG 5 cut(s) 147, 169, 262, 1315, 1487
BstSLI GKGCMC 1 cut(s) 619
BstUI CGCG 1 cut(s) 1125
BstV1I GCAGC 4 cut(s) 382, 517, 520, 878
BstX2I RGATCY 2 cut(s) 70, 719
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 2 cut(s) 70, 719
BstZ17I GTATAC 1 cut(s) 1399
Bsu15I ATCGAT 1 cut(s) 1020
BsuRI GGCC 5 cut(s) 96, 512, 668, 1205, 1487
BsuTUI ATCGAT 1 cut(s) 1020
BtgI CCRYGG 4 cut(s) 22, 54, 525, 1272
BtgZI GCGATG 2 cut(s) 307, 372
BtsCI GGATG 4 cut(s) 231, 387, 649, 1518
BtsIMutI CAGTG 3 cut(s) 351, 1069, 1106
Cac8I GCNNGC 3 cut(s) 191, 393, 1364
CaiI CAGNNNCTG 1 cut(s) 1488
CfoI GCGC 4 cut(s) 189, 205, 1127, 1445
Cfr13I GGNCC 3 cut(s) 26, 666, 1485
ClaI ATCGAT 1 cut(s) 1020
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 2 cut(s) 145, 1335
CspCI CAANNNNNGTGG 8 cut(s) 463, 498, 676, 711, 784, 819, 1059, 1094
CviQI GTAC 2 cut(s) 145, 1335
DpnI GATC 8 cut(s) 48, 72, 252, 603, 721, 807, 1019, 1379
DpnII GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
DraIII CACNNNGTG 1 cut(s) 614
EaeI YGGCCR 1 cut(s) 1203
Eco130I CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
Eco47I GGWCC 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 1485
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 4 cut(s) 169, 262, 1315, 1487
EcoT14I CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
EcoT22I ATGCAT 1 cut(s) 1387
ErhI CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
Esp3I CGTCTC 1 cut(s) 534
FaqI GGGAC 2 cut(s) 511, 831
FauNDI CATATG 1 cut(s) 848
FblI GTMKAC 1 cut(s) 1398
Fnu4HI GCNGC 4 cut(s) 396, 531, 534, 867
FokI GGATG 4 cut(s) 218, 394, 636, 1505
Fsp4HI GCNGC 4 cut(s) 396, 531, 534, 867
FspBI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
FspI TGCGCA 1 cut(s) 1444
GlaI GCGC 4 cut(s) 188, 204, 1126, 1444
GluI GCNGC 4 cut(s) 396, 531, 534, 867
GsuI CTGGAG 1 cut(s) 1299
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 5 cut(s) 96, 512, 668, 1205, 1487
HapII CCGG 3 cut(s) 74, 149, 194
HhaI GCGC 4 cut(s) 189, 205, 1127, 1445
Hin6I GCGC 4 cut(s) 187, 203, 1125, 1443
HinP1I GCGC 4 cut(s) 187, 203, 1125, 1443
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HinfI GANTC 8 cut(s) 197, 357, 372, 645, 1022, 1036, 1067, 1405
HpaII CCGG 3 cut(s) 74, 149, 194
HphI GGTGA 3 cut(s) 696, 1331, 1403
Hpy166II GTNNAC 4 cut(s) 617, 1032, 1084, 1399
Hpy188I TCNGA 5 cut(s) 601, 736, 1175, 1187, 1461
Hpy188III TCNNGA 7 cut(s) 68, 74, 85, 896, 977, 1040, 1522
Hpy8I GTNNAC 4 cut(s) 617, 1032, 1084, 1399
HpyAV CCTTC 5 cut(s) 318, 573, 911, 1110, 1486
HpyCH4III ACNGT 4 cut(s) 44, 479, 822, 1440
HpyCH4IV ACGT 1 cut(s) 1529
HpyF10VI GCNNNNNNNGC 4 cut(s) 297, 872, 1382, 1451
HpySE526I ACGT 1 cut(s) 1529
HspAI GCGC 4 cut(s) 187, 203, 1125, 1443
Kpn2I TCCGGA 1 cut(s) 73
Kzo9I GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
LmnI GCTCC 3 cut(s) 929, 1318, 1451
Lsp1109I GCAGC 4 cut(s) 382, 517, 520, 878
LweI GCATC 4 cut(s) 330, 853, 1394, 1504
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
MaeII ACGT 1 cut(s) 1529
MaeIII GTNAC 2 cut(s) 489, 1434
MalI GATC 8 cut(s) 48, 72, 252, 603, 721, 807, 1019, 1379
MboI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
MboII GAAGA 2 cut(s) 89, 958
MfeI CAATTG 2 cut(s) 1357, 1446
MflI RGATCY 2 cut(s) 70, 719
MhlI GDGCHC 2 cut(s) 619, 1529
MlyI GAGTC 2 cut(s) 206, 1399
MmeI TCCRAC 3 cut(s) 349, 622, 1399
Mph1103I ATGCAT 1 cut(s) 1387
MroI TCCGGA 1 cut(s) 73
MseI TTAA 3 cut(s) 621, 999, 1049
MslI CAYNNNNRTG 5 cut(s) 419, 861, 958, 1430, 1512
MspI CCGG 3 cut(s) 74, 149, 194
MspR9I CCNGG 5 cut(s) 149, 171, 264, 1317, 1489
MunI CAATTG 2 cut(s) 1357, 1446
MvaI CCWGG 4 cut(s) 171, 264, 1317, 1489
MvnI CGCG 1 cut(s) 1125
MwoI GCNNNNNNNGC 4 cut(s) 297, 872, 1382, 1451
NciI CCSGG 1 cut(s) 149
NcoI CCATGG 4 cut(s) 22, 54, 525, 1272
NdeI CATATG 1 cut(s) 848
NdeII GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
NlaIV GGNNCC 2 cut(s) 72, 1121
NmeAIII GCCGAG 2 cut(s) 315, 1231
NsbI TGCGCA 1 cut(s) 1444
NsiI ATGCAT 1 cut(s) 1387
NspI RCATGY 2 cut(s) 442, 1429
PfeI GAWTC 6 cut(s) 357, 372, 645, 1022, 1036, 1067
PkrI GCNGC 4 cut(s) 397, 532, 535, 868
PleI GAGTC 2 cut(s) 205, 1399
PpsI GAGTC 2 cut(s) 205, 1399
Ppu21I YACGTR 1 cut(s) 1530
Psp6I CCWGG 4 cut(s) 169, 262, 1315, 1487
PspGI CCWGG 4 cut(s) 169, 262, 1315, 1487
PspN4I GGNNCC 2 cut(s) 72, 1121
PspPI GGNCC 3 cut(s) 26, 666, 1485
PstNI CAGNNNCTG 1 cut(s) 1488
PsuI RGATCY 2 cut(s) 70, 719
RsaI GTAC 2 cut(s) 146, 1336
RsaNI GTAC 2 cut(s) 145, 1335
RseI CAYNNNNRTG 5 cut(s) 419, 861, 958, 1430, 1512
SaqAI TTAA 3 cut(s) 621, 999, 1049
SatI GCNGC 4 cut(s) 396, 531, 534, 867
Sau3AI GATC 8 cut(s) 46, 70, 250, 601, 719, 805, 1017, 1377
Sau96I GGNCC 3 cut(s) 26, 666, 1485
ScaI AGTACT 1 cut(s) 1336
SchI GAGTC 2 cut(s) 206, 1399
ScrFI CCNGG 5 cut(s) 149, 171, 264, 1317, 1489
SduI GDGCHC 2 cut(s) 619, 1529
SexAI ACCWGGT 1 cut(s) 169
SfaNI GCATC 4 cut(s) 330, 853, 1394, 1504
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 5 cut(s) 419, 861, 958, 1430, 1512
SsiI CCGC 1 cut(s) 1123
SspMI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
StyD4I CCNGG 5 cut(s) 147, 169, 262, 1315, 1487
StyI CCWWGG 5 cut(s) 22, 54, 525, 1259, 1272
TaaI ACNGT 4 cut(s) 44, 479, 822, 1440
TaiI ACGT 1 cut(s) 1532
TaqI TCGA 3 cut(s) 12, 861, 1020
TaqII GACCGA 1 cut(s) 1478
TatI WGTACW 1 cut(s) 1334
TfiI GAWTC 6 cut(s) 357, 372, 645, 1022, 1036, 1067
Tru1I TTAA 3 cut(s) 621, 999, 1049
Tru9I TTAA 3 cut(s) 621, 999, 1049
TscAI CASTG 3 cut(s) 358, 1069, 1113
TseI GCWGC 4 cut(s) 395, 530, 533, 866
TspDTI ATGAA 3 cut(s) 845, 901, 927
TspRI CASTG 3 cut(s) 358, 1069, 1113
VneI GTGCAC 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 4 cut(s) 80, 691, 934, 1264
XbaI TCTAGA 1 cut(s) 976
XceI RCATGY 2 cut(s) 442, 1429
XmaJI CCTAGG 1 cut(s) 1259
XmiI GTMKAC 1 cut(s) 1398
XspI CTAG 6 cut(s) 288, 407, 537, 584, 977, 1260
ZrmI AGTACT 1 cut(s) 1336
Zsp2I ATGCAT 1 cut(s) 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.