Prupe.4G155600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015339
Physical Location & Seq
Forward (+)
8910978 .. 8912544
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G155600.1

Sequence Viewer

Length: 558 bp
ATGGAAGCTTTGTGGAATTTAGAAGACAAGTGGAGGCTGTCAACCCAAGAAGCTTTCGTCCTATTGGTATCTGCTGCCTTTGCTGTCATTGGTCTTTGCATGGCCGCAACGGTTTTACTAAAGAAGGCTCAGAGAAAACAGCAGCAGATTGTGATGAGCAGCAGCCAACAAGAGACCGCAGCAACAGGTCCCAAATTGTCAGGCTCTGAGCCAAGTTGCAGTTGGGGGTCAATAAAGGGGGCGTTGGTGAGCACGGTGCGGTGGAGCAGAGCCAGCAAGTGGGAGGAGGAGAGACAACAGGGTGGGAGCTGGAGAGAGACGCCGCGGCCGCTGCTGGACAAAAGGGTTGCAGTTGAAGTGGGGTGGCGAAGCCATAACTCAGACTCCCCTGTGTGGCAAAGGCCAATACTTATGGGGGAGAAATGTGAGCTTCCAAGATTTAGTGGCCTTATTCTGTATGATGAAAGAGGTCGGCCTCTTTGTCACTCCCACAAAGAAACCAGAAACCAGGAAAAAACAGCTGCTGTTGCAAGAACAACTTTGAGGGACTTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.86

Weight (kDa)

9.5

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14760
fragaria_vesca FvH4_3g17620
malus_domestica MD03G1250700.v1.1 MD11G1270900.v1.1
prunus_persica Prupe.4G155600_v2.0.a1
pyrus_communis pycom03g19840 pycom11g23960
rosa_chinensis RchiOBHm_Chr5g0029351
rosa_laevigata RLG00000033157
rosa_multiflora Rmu_sc0000566.1_g000002
rosa_roxburghii Rroxscaffold_1G00050650
rosa_rugosa Rorug05G0113400
rosa_samantha Rh5AG205400 Rh5BG203900 Rh5CG225800
rosa_wichuraiana Rw5G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 279
AccII CGCG 1 cut(s) 325
AciI CCGC 6 cut(s) 105, 177, 259, 323, 325, 329
AcoI YGGCCR 2 cut(s) 102, 326
AcsI RAATTY 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 279, 393
AgsI TTSAA 1 cut(s) 356
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 5 cut(s) 8, 53, 309, 430, 521
AluI AGCT 5 cut(s) 8, 53, 309, 430, 521
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 3 cut(s) 167, 286, 311
AlwNI CAGNNNCTG 2 cut(s) 206, 524
AoxI GGCC 5 cut(s) 102, 326, 401, 445, 473
ApeKI GCWGC 7 cut(s) 74, 142, 159, 162, 179, 331, 521
ApoI RAATTY 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 7 cut(s) 61, 154, 171, 174, 191, 318, 508
BciT130I CCWGG 1 cut(s) 509
BcoDI GTCTC 3 cut(s) 167, 286, 311
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 323
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 393
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 1 cut(s) 323
BseLI CCNNNNNNNGG 2 cut(s) 279, 393
BseMII CTCAG 3 cut(s) 143, 198, 393
BseRI GAGGAG 2 cut(s) 299, 302
BseX3I CGGCCG 1 cut(s) 326
BseXI GCAGC 7 cut(s) 61, 154, 171, 174, 191, 318, 508
Bsh1236I CGCG 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 5 cut(s) 104, 328, 403, 447, 475
BsiEI CGRYCG 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 254
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 279, 393
BsmAI GTCTC 3 cut(s) 167, 286, 311
BsmBI CGTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 5 cut(s) 104, 328, 403, 447, 475
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 254
BspACI CCGC 6 cut(s) 105, 177, 259, 323, 325, 329
BspANI GGCC 5 cut(s) 104, 328, 403, 447, 475
BspCNI CTCAG 3 cut(s) 142, 199, 392
BspFNI CGCG 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 323
BssNI GRCGYC 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 112, 256
BstACI GRCGYC 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 3 cut(s) 129, 207, 379
BstDSI CCRYGG 1 cut(s) 323
BstFNI CGCG 1 cut(s) 325
BstMAI GTCTC 3 cut(s) 167, 286, 311
BstMCI CGRYCG 1 cut(s) 329
BstMWI GCNNNNNNNGC 5 cut(s) 80, 273, 328, 331, 527
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 507
BstUI CGCG 1 cut(s) 325
BstV1I GCAGC 7 cut(s) 61, 154, 171, 174, 191, 318, 508
BstV2I GAAGAC 1 cut(s) 30
BstZI CGGCCG 1 cut(s) 326
BsuRI GGCC 5 cut(s) 104, 328, 403, 447, 475
BtgI CCRYGG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 274
CaiI CAGNNNCTG 2 cut(s) 206, 524
CciNI GCGGCCGC 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 188
Cfr42I CCGCGG 1 cut(s) 326
CseI GACGC 1 cut(s) 328
CviAII CATG 1 cut(s) 100
DdeI CTNAG 3 cut(s) 129, 207, 379
EaeI YGGCCR 2 cut(s) 102, 326
EagI CGGCCG 1 cut(s) 326
EclXI CGGCCG 1 cut(s) 326
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 188
Eco52I CGGCCG 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 507
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 1 cut(s) 103
FaiI YATR 4 cut(s) 101, 375, 413, 459
FalI AAGNNNNNCTT 2 cut(s) 523, 555
FaqI GGGAC 1 cut(s) 174
FatI CATG 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 331
HaeIII GGCC 5 cut(s) 104, 328, 403, 447, 475
HgaI GACGC 1 cut(s) 328
Hin1I GRCGYC 1 cut(s) 320
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HindIII AAGCTT 2 cut(s) 6, 51
HinfI GANTC 1 cut(s) 383
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 3 cut(s) 132, 208, 382
Hpy8I GTNNAC 1 cut(s) 42
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 112, 256
HpyCH4V TGCA 4 cut(s) 99, 219, 350, 530
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 273, 328, 331, 527
HpyF3I CTNAG 3 cut(s) 129, 207, 379
Hsp92I GRCGYC 1 cut(s) 320
Hsp92II CATG 1 cut(s) 103
KspI CCGCGG 1 cut(s) 326
LmnI GCTCC 2 cut(s) 264, 306
Lsp1109I GCAGC 7 cut(s) 61, 154, 171, 174, 191, 318, 508
MaeIII GTNAC 1 cut(s) 482
MboII GAAGA 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 2 cut(s) 16, 194
MlyI GAGTC 1 cut(s) 377
MnlI CCTC 6 cut(s) 27, 277, 280, 461, 486, 537
MspA1I CMGCKG 3 cut(s) 325, 331, 521
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 1 cut(s) 325
MwoI GCNNNNNNNGC 5 cut(s) 80, 273, 328, 331, 527
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 482
NotI GCGGCCGC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 279
PleI GAGTC 1 cut(s) 377
PpsI GAGTC 1 cut(s) 377
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 188
PstNI CAGNNNCTG 2 cut(s) 206, 524
PvuII CAGCTG 1 cut(s) 521
SacII CCGCGG 1 cut(s) 326
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 1 cut(s) 254
SetI ASST 7 cut(s) 10, 55, 190, 311, 432, 472, 523
Sfr303I CCGCGG 1 cut(s) 326
SgrBI CCGCGG 1 cut(s) 326
SinI GGWCC 1 cut(s) 188
Sse9I AATT 2 cut(s) 16, 194
SsiI CCGC 6 cut(s) 105, 177, 259, 323, 325, 329
StyD4I CCNGG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 112, 256
TasI AATT 2 cut(s) 16, 194
TauI GCSGC 4 cut(s) 107, 325, 328, 331
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 7 cut(s) 74, 142, 159, 162, 179, 331, 521
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 1 cut(s) 477
Van91I CCANNNNNTGG 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.