pycom03g19840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0015339
Physical Location & Seq
Reverse (-)
20483220 .. 20483726
507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g19840.1

Sequence Viewer

Length: 507 bp
ATGGAAGCTTTGTGGAATTTAGAAGACAAGTGGAGGTTCTCTACCCACCAAGCATTTCTGCTATTAGTTTCCGCTGCGTTTGCCATCGTCGGTCTTTGCATGGTGGCGACGGTTTTGCTAAAGAAGGCTCAGAGGAAGCCGGAGGAGCAGAAGCTTGTGATGAGCAGCCAGAGAGAGGCGGTAGCAGGTCAACAGAAATGGTCTGAGCCGAGTTGTGGTTGGGGGTCGATAAAGAGGGCGTTGGTGAGCTCGGTGCGGTGGAGCAGAAGGAGCAAGTGGGAGGAGAGGAGGGGCGGGAGCTGGAGAGAGACGCCGCGGCCGCTGCTGGACAAAAAGGTTGAGGTTGAAGTGGGGCGGCGGAGCCATAACTCGGATTCTCCTGTGTGGCAGAGGCCTATACTTTTGGGGGAGAAATGTGAGCTTCCGAGGTTCAGTGGGCTTATTCTCTATGATGAAAGAGGTCGGCCTCTGTGTGATTCCCACAAAGAAACCAGAAACCAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.43

Weight (kDa)

9.85

Isoelectric Point (pI)

67.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14760
fragaria_vesca FvH4_3g17620
malus_domestica MD03G1250700.v1.1 MD11G1270900.v1.1
prunus_persica Prupe.4G155600_v2.0.a1
pyrus_communis pycom03g19840 pycom11g23960
rosa_chinensis RchiOBHm_Chr5g0029351
rosa_laevigata RLG00000033157
rosa_multiflora Rmu_sc0000566.1_g000002
rosa_roxburghii Rroxscaffold_1G00050650
rosa_rugosa Rorug05G0113400
rosa_samantha Rh5AG205400 Rh5BG203900 Rh5CG225800
rosa_wichuraiana Rw5G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 176
AccII CGCG 1 cut(s) 316
AciI CCGC 9 cut(s) 72, 179, 256, 294, 314, 316, 320, 355, 358
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 311
AfiI CCNNNNNNNGG 3 cut(s) 175, 215, 370
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 498
AluBI AGCT 5 cut(s) 8, 154, 249, 300, 421
AluI AGCT 5 cut(s) 8, 154, 249, 300, 421
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 302
AoxI GGCC 3 cut(s) 317, 392, 464
ApeKI GCWGC 3 cut(s) 74, 165, 322
ApoI RAATTY 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 256
BanII GRGCYC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 3 cut(s) 61, 177, 309
BccI CCATC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 1 cut(s) 500
BcoDI GTCTC 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 176
BisI GCNGC 7 cut(s) 75, 166, 314, 317, 320, 323, 356
BlsI GCNGC 7 cut(s) 76, 167, 315, 318, 321, 324, 357
Bme1390I CCNGG 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 362
BmrFI CCNGG 1 cut(s) 500
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 322
BsaHI GRCGYC 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 314, 425
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 215, 370
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 2 cut(s) 314, 425
BseLI CCNNNNNNNGG 3 cut(s) 175, 215, 370
BseMII CTCAG 2 cut(s) 143, 195
BseRI GAGGAG 3 cut(s) 158, 296, 301
BseX3I CGGCCG 1 cut(s) 317
BseXI GCAGC 3 cut(s) 61, 177, 309
Bsh1236I CGCG 1 cut(s) 316
Bsh1285I CGRYCG 1 cut(s) 320
BshFI GGCC 3 cut(s) 319, 394, 466
BsiEI CGRYCG 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 3 cut(s) 175, 215, 370
BsmAI GTCTC 1 cut(s) 302
BsmBI CGTCTC 1 cut(s) 302
BsnI GGCC 3 cut(s) 319, 394, 466
Bsp1286I GDGCHC 1 cut(s) 251
BspACI CCGC 9 cut(s) 72, 179, 256, 294, 314, 316, 320, 355, 358
BspANI GGCC 3 cut(s) 319, 394, 466
BspCNI CTCAG 2 cut(s) 142, 196
BspFNI CGCG 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 362
BspMI ACCTGC 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 314, 425
BssNI GRCGYC 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 500
Bst4CI ACNGT 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 129, 204
BstDSI CCRYGG 1 cut(s) 314
BstFNI CGCG 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 302
BstMCI CGRYCG 1 cut(s) 320
BstMWI GCNNNNNNNGC 5 cut(s) 80, 145, 270, 319, 322
BstNI CCWGG 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 498
BstUI CGCG 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 61, 177, 309
BstV2I GAAGAC 1 cut(s) 30
BstZI CGGCCG 1 cut(s) 317
BsuRI GGCC 3 cut(s) 319, 394, 466
BtgI CCRYGG 1 cut(s) 314
BtsIMutI CAGTG 1 cut(s) 439
BveI ACCTGC 1 cut(s) 176
CciNI GCGGCCGC 1 cut(s) 317
Cfr42I CCGCGG 1 cut(s) 317
CseI GACGC 1 cut(s) 319
CsiI ACCWGGT 1 cut(s) 498
CviAII CATG 1 cut(s) 100
DdeI CTNAG 2 cut(s) 129, 204
EaeI YGGCCR 1 cut(s) 317
EagI CGGCCG 1 cut(s) 317
EciI GGCGGA 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 249
EclXI CGGCCG 1 cut(s) 317
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 251
Eco52I CGGCCG 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 1 cut(s) 103
FaiI YATR 5 cut(s) 101, 366, 398, 450, 505
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 7 cut(s) 75, 166, 314, 317, 320, 323, 356
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 7 cut(s) 75, 166, 314, 317, 320, 323, 356
GluI GCNGC 7 cut(s) 75, 166, 314, 317, 320, 323, 356
GsuI CTGGAG 1 cut(s) 322
HaeIII GGCC 3 cut(s) 319, 394, 466
HapII CCGG 1 cut(s) 140
HgaI GACGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 311
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HindIII AAGCTT 2 cut(s) 6, 152
HinfI GANTC 2 cut(s) 374, 476
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 4 cut(s) 132, 205, 373, 426
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 2 cut(s) 92, 112
HpyAV CCTTC 2 cut(s) 118, 261
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 145, 270, 319, 322
HpyF3I CTNAG 2 cut(s) 129, 204
Hsp92I GRCGYC 1 cut(s) 311
Hsp92II CATG 1 cut(s) 103
KspI CCGCGG 1 cut(s) 317
LmnI GCTCC 5 cut(s) 145, 261, 270, 297, 360
LpnPI CCDG 7 cut(s) 153, 171, 182, 286, 311, 393, 485
Lsp1109I GCAGC 3 cut(s) 61, 177, 309
MabI ACCWGGT 1 cut(s) 498
MboII GAAGA 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 1 cut(s) 16
MspA1I CMGCKG 3 cut(s) 74, 316, 322
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 500
MvaI CCWGG 1 cut(s) 500
MvnI CGCG 1 cut(s) 316
MwoI GCNNNNNNNGC 5 cut(s) 80, 145, 270, 319, 322
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 362
NmeAIII GCCGAG 1 cut(s) 234
NotI GCGGCCGC 1 cut(s) 317
PceI AGGCCT 1 cut(s) 394
PfeI GAWTC 2 cut(s) 374, 476
PkrI GCNGC 7 cut(s) 76, 167, 315, 318, 321, 324, 357
Psp124BI GAGCTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 498
PspGI CCWGG 1 cut(s) 498
PspN4I GGNNCC 1 cut(s) 362
SacI GAGCTC 1 cut(s) 251
SacII CCGCGG 1 cut(s) 317
SatI GCNGC 7 cut(s) 75, 166, 314, 317, 320, 323, 356
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 1 cut(s) 251
SexAI ACCWGGT 1 cut(s) 498
Sfr303I CCGCGG 1 cut(s) 317
SgrBI CCGCGG 1 cut(s) 317
Sse9I AATT 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 9 cut(s) 72, 179, 256, 294, 314, 316, 320, 355, 358
SstI GAGCTC 1 cut(s) 251
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 1 cut(s) 498
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 227
TaqII GACCGA 1 cut(s) 80
TasI AATT 1 cut(s) 16
TauI GCSGC 4 cut(s) 316, 319, 322, 358
TfiI GAWTC 2 cut(s) 374, 476
TscAI CASTG 1 cut(s) 439
TseI GCWGC 3 cut(s) 74, 165, 322
TspDTI ATGAA 1 cut(s) 468
TspRI CASTG 1 cut(s) 439
XapI RAATTY 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.