AT3G15290

3-hydroxyacyl-CoA dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015035
Physical Location & Seq
Forward (+)
5144938 .. 5146860
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15290.2

Sequence Viewer

Length: 885 bp
ATGGCGGAGATGAAGAGTGTCGGAGTAGTTGGTGCTGGACAAATGGGTTCAGGAATCGCGCAACTCGCCGCCACGAGTGGCCTCGACGTTTGGCTCATGGACGCTGATCGAGATGCCCTCTCTCGAGCCACCGCAGCTATCTCCTCCTCCGTCAAACGATTCGTCTCCAAAGGTCTAATCTCCAAGGAAGTTGGTGATGATGCTATGCATCGTCTACGATTAACATCGAATCTTGAAGATTTGTGTTCTGCTGATATCATCGTTGAAGCCATTGTGGAATCAGAAGACATTAAGAAGAAGCTGTTTAAGGATCTAGATGGTATAGCTAAGAGTTCTGCGATTTTAGCTTCTAACACAAGTTCTATATCCATTACTCGTCTTGCATCTGCTACGAGAAGACCCAGCCAGGTCATTGGAATGCACTTTATGAACCCTCCTCCAATAATGAAACTGGTTGAAATCATTCGCGGTGCAGATACCTCAGAAGAGACGTTTCTTGCTACAAAAGTTCTGGCTGAAAGGTTTGGCAAGACAACAGTCTGCTCACAAGACTATGCGGGATTCGTAGTGAACCGAATCCTCATGCCTATGATCAATGAAGCGTTCCACACACTTTACACAGGGGTAGCTACAAAGGAAGACATTGACAGCGGAATGAAACACGGCACAAACCACCCGATGGGTCCTTTGGAGTTGGCGGACTTAATCGGTCTAGACGTGTGCTTGTCCGTAATGAAAGTGTTGCACGAGGGACTTGGGGACTCAAAGTACGCACCTTGCCCTCTTCTTGTTCAATACGTTGATGCTGGGAGATTAGGAAGAAAACGAGGAGTAGGAGTTTATGATTACCGTGAAGCTACACAGAAGCTGTCTCCGCGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00362 ko00650 ko01100 ko01120 map00360 map00362 map00650 map01100 map01120
Pfam Domains
Protein Families
3HCDH 3HCDH_N

Protein Analysis

294

Amino Acids

31.69

Weight (kDa)

6.6

Isoelectric Point (pI)

29.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
3HCDH_N PF02737 6 - 125 4e-44 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH PF00725 128 - 224 3e-37 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15290 AT3G15290
fragaria_vesca FvH4_3g19690
malus_domestica MD11G1251600.v1.1
prunus_persica Prupe.4G177500_v2.0.a1 Prupe.4G177500_v2.0.a1
pyrus_communis pycom11g22290
rosa_chinensis RchiOBHm_Chr5g0032991
rosa_laevigata RLG00000033441
rosa_multiflora Rmu_sc0000986.1_g000019
rosa_roxburghii Rroxscaffold_1G00047050
rosa_rugosa Rorug05G0134700
rosa_samantha Rh5AG227600 Rh5BG229100 Rh5DG233800
rosa_wichuraiana Rw5G020840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 679
AccI GTMKAC 1 cut(s) 214
AccII CGCG 3 cut(s) 59, 468, 877
AciI CCGC 9 cut(s) 5, 69, 132, 468, 557, 651, 698, 875, 877
AclWI GGATC 1 cut(s) 318
AfaI GTAC 1 cut(s) 770
AfiI CCNNNNNNNGG 1 cut(s) 679
AflIII ACRYGT 1 cut(s) 717
AgsI TTSAA 4 cut(s) 236, 266, 458, 794
AjiI CACGTC 1 cut(s) 718
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 7 cut(s) 137, 301, 326, 347, 629, 857, 868
AluI AGCT 7 cut(s) 137, 301, 326, 347, 629, 857, 868
Alw26I GTCTC 3 cut(s) 169, 482, 876
AlwI GGATC 1 cut(s) 318
AlwNI CAGNNNCTG 1 cut(s) 868
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 134
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 683
AsuHPI GGTGA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 123
AvaII GGWCC 1 cut(s) 683
BauI CACGAG 2 cut(s) 73, 746
BbsI GAAGAC 3 cut(s) 291, 403, 645
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 311, 673
BceAI ACGGC 1 cut(s) 679
BciT130I CCWGG 1 cut(s) 407
BclI TGATCA 1 cut(s) 591
BcoDI GTCTC 3 cut(s) 169, 482, 876
BfaI CTAG 2 cut(s) 314, 713
BisI GCNGC 3 cut(s) 69, 135, 878
BlsI GCNGC 3 cut(s) 70, 136, 879
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 683
BmeT110I CYCGRG 1 cut(s) 123
BmgBI CACGTC 1 cut(s) 718
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 1 cut(s) 684
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 5 cut(s) 103, 190, 217, 392, 793
BoxI GACNNNNGTC 1 cut(s) 536
BpiI GAAGAC 3 cut(s) 291, 403, 645
BplI GAGNNNNNCTC 2 cut(s) 102, 134
BsaBI GATNNNNATC 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 183, 875
BsaXI ACNNNNNCTCC 2 cut(s) 822, 852
Bsc4I CCNNNNNNNGG 1 cut(s) 679
Bse1I ACTGG 1 cut(s) 456
Bse8I GATNNNNATC 1 cut(s) 223
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 2 cut(s) 183, 875
BseJI GATNNNNATC 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 679
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 4 cut(s) 133, 136, 426, 843
BseXI GCAGC 1 cut(s) 146
BseYI CCCAGC 2 cut(s) 401, 806
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 3 cut(s) 59, 468, 877
BshFI GGCC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 765, 773
BslI CCNNNNNNNGG 1 cut(s) 679
BsmAI GTCTC 3 cut(s) 169, 482, 876
BsmBI CGTCTC 2 cut(s) 169, 482
BsmFI GGGAC 2 cut(s) 765, 773
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 1 cut(s) 81
BsoBI CYCGRG 1 cut(s) 123
Bsp143I GATC 3 cut(s) 106, 310, 591
BspACI CCGC 9 cut(s) 5, 69, 132, 468, 557, 651, 698, 875, 877
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 494
BspFNI CGCG 3 cut(s) 59, 468, 877
BspLI GGNNCC 1 cut(s) 684
BspPI GGATC 1 cut(s) 318
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 2 cut(s) 183, 875
BssMI GATC 3 cut(s) 106, 310, 591
BssSI CACGAG 2 cut(s) 73, 746
BssT1I CCWWGG 1 cut(s) 183
Bst2BI CACGAG 2 cut(s) 73, 746
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 538, 851
Bst6I CTCTTC 3 cut(s) 8, 480, 789
BstDEI CTNAG 2 cut(s) 327, 481
BstDSI CCRYGG 1 cut(s) 875
BstFNI CGCG 3 cut(s) 59, 468, 877
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 3 cut(s) 109, 313, 594
BstMAI GTCTC 3 cut(s) 169, 482, 876
BstMBI GATC 3 cut(s) 106, 310, 591
BstMWI GCNNNNNNNGC 4 cut(s) 65, 134, 344, 874
BstNI CCWGG 1 cut(s) 407
BstPAI GACNNNNGTC 1 cut(s) 536
BstSCI CCNGG 1 cut(s) 405
BstUI CGCG 3 cut(s) 59, 468, 877
BstV1I GCAGC 1 cut(s) 146
BstV2I GAAGAC 3 cut(s) 291, 403, 645
BstX2I RGATCY 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 413
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 875
BtrI CACGTC 1 cut(s) 718
CaiI CAGNNNCTG 1 cut(s) 868
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 683
Cfr42I CCGCGG 1 cut(s) 878
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 769
CviAII CATG 2 cut(s) 97, 583
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 2 cut(s) 327, 481
DpnI GATC 3 cut(s) 108, 312, 593
DpnII GATC 3 cut(s) 106, 310, 591
Eam1104I CTCTTC 3 cut(s) 8, 480, 789
EarI CTCTTC 3 cut(s) 8, 480, 789
EciI GGCGGA 2 cut(s) 20, 713
Eco130I CCWWGG 1 cut(s) 183
Eco32I GATATC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 123
EcoO109I RGGNCCY 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 405
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 2 cut(s) 169, 482
FaeI CATG 2 cut(s) 100, 586
FaiI YATR 9 cut(s) 98, 206, 323, 365, 428, 555, 584, 590, 843
FaqI GGGAC 2 cut(s) 765, 773
FatI CATG 2 cut(s) 96, 582
FauI CCCGC 1 cut(s) 550
FbaI TGATCA 1 cut(s) 591
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 3 cut(s) 69, 135, 878
Fsp4HI GCNGC 3 cut(s) 69, 135, 878
FspBI CTAG 2 cut(s) 314, 713
GlaI GCGC 1 cut(s) 60
GluI GCNGC 3 cut(s) 69, 135, 878
GsaI CCCAGC 2 cut(s) 405, 810
HaeIII GGCC 1 cut(s) 81
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 61
Hin1II CATG 2 cut(s) 100, 586
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 7 cut(s) 54, 159, 229, 278, 561, 576, 761
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 2 cut(s) 215, 571
Hpy188I TCNGA 4 cut(s) 23, 283, 484, 884
Hpy188III TCNNGA 6 cut(s) 51, 110, 123, 233, 314, 713
Hpy8I GTNNAC 2 cut(s) 215, 571
Hpy99I CGWCG 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 538, 851
HpyCH4IV ACGT 4 cut(s) 87, 491, 717, 798
HpyCH4V TGCA 5 cut(s) 208, 383, 421, 473, 745
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 134, 344, 874
HpyF3I CTNAG 2 cut(s) 327, 481
HpySE526I ACGT 4 cut(s) 87, 491, 717, 798
Hsp92II CATG 2 cut(s) 100, 586
HspAI GCGC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 591
KspI CCGCGG 1 cut(s) 878
Kzo9I GATC 3 cut(s) 106, 310, 591
LpnPI CCDG 9 cut(s) 21, 36, 392, 415, 419, 437, 497, 606, 792
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 5 cut(s) 103, 190, 217, 392, 793
MaeI CTAG 2 cut(s) 314, 713
MaeII ACGT 4 cut(s) 87, 491, 717, 798
MalI GATC 3 cut(s) 108, 312, 593
MboI GATC 3 cut(s) 106, 310, 591
MboII GAAGA 9 cut(s) 25, 248, 296, 307, 408, 497, 650, 776, 831
MflI RGATCY 1 cut(s) 310
MlyI GAGTC 1 cut(s) 755
Mph1103I ATGCAT 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 4 cut(s) 221, 291, 306, 704
MslI CAYNNNNRTG 2 cut(s) 416, 587
MspA1I CMGCKG 2 cut(s) 651, 877
MspR9I CCNGG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 3 cut(s) 59, 468, 877
MwoI GCNNNNNNNGC 4 cut(s) 65, 134, 344, 874
NdeII GATC 3 cut(s) 106, 310, 591
NlaIII CATG 2 cut(s) 100, 586
NlaIV GGNNCC 1 cut(s) 684
NsiI ATGCAT 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 714
PctI GAATGC 1 cut(s) 423
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 6 cut(s) 54, 159, 229, 278, 561, 576
PflMI CCANNNNNTGG 1 cut(s) 679
PkrI GCNGC 3 cut(s) 70, 136, 879
PleI GAGTC 1 cut(s) 755
PpsI GAGTC 1 cut(s) 755
PpuMI RGGWCCY 1 cut(s) 683
PshAI GACNNNNGTC 1 cut(s) 536
Psp5II RGGWCCY 1 cut(s) 683
Psp6I CCWGG 1 cut(s) 405
PspFI CCCAGC 2 cut(s) 401, 806
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 684
PspPI GGNCC 1 cut(s) 683
PspPPI RGGWCCY 1 cut(s) 683
PstNI CAGNNNCTG 1 cut(s) 868
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
RseI CAYNNNNRTG 2 cut(s) 416, 587
SacII CCGCGG 1 cut(s) 878
SaqAI TTAA 4 cut(s) 221, 291, 306, 704
SatI GCNGC 3 cut(s) 69, 135, 878
Sau3AI GATC 3 cut(s) 106, 310, 591
Sau96I GGNCC 1 cut(s) 683
SchI GAGTC 1 cut(s) 755
ScrFI CCNGG 1 cut(s) 407
SfaNI GCATC 5 cut(s) 103, 190, 217, 392, 793
Sfr274I CTCGAG 1 cut(s) 123
Sfr303I CCGCGG 1 cut(s) 878
SgrBI CCGCGG 1 cut(s) 878
SinI GGWCC 1 cut(s) 683
SlaI CTCGAG 1 cut(s) 123
SmiMI CAYNNNNRTG 2 cut(s) 416, 587
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
SsiI CCGC 9 cut(s) 5, 69, 132, 468, 557, 651, 698, 875, 877
SspMI CTAG 2 cut(s) 314, 713
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 538, 851
TaiI ACGT 4 cut(s) 90, 494, 720, 801
TaqI TCGA 4 cut(s) 84, 109, 124, 227
TaqII GACCGA 1 cut(s) 698
TauI GCSGC 2 cut(s) 71, 880
TfiI GAWTC 6 cut(s) 54, 159, 229, 278, 561, 576
Tru1I TTAA 4 cut(s) 221, 291, 306, 704
Tru9I TTAA 4 cut(s) 221, 291, 306, 704
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 6 cut(s) 26, 443, 461, 612, 671, 749
TspGWI ACGGA 2 cut(s) 139, 718
Van91I CCANNNNNTGG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 683
XbaI TCTAGA 2 cut(s) 313, 712
XhoI CTCGAG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 2 cut(s) 314, 713
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.