FvH4_3g19690

3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015035
Physical Location & Seq
Forward (+)
12882626 .. 12885065
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19690.t1

Sequence Viewer

Length: 894 bp
ATGATCTCGGAGATGAAGACGATTGCTGTGGTGGGCGGCGGCCAAATGGGTTCAGGAATAGCCCAACTCGCCGCCATGCACGGATGTGATGCTTGGCTCCTGGATACCGACCCAAGTGCTCTGACCAGAGCCTCCAAGTCCATCTCCAGCTCCATCCAGCGCCTCGTTTCCAAAGGACAACTCACCCAGGCTGTTGGTAAAGATGCTTTGGGCCGTCTGCGGTATACCTCAAACTTGCAAGAACTATCTTCAGCAGATGTTATTATTGAAGCCATTGTGGAGTCTGAAGATGTGAAGAAAAAGTTATTTATTGAAATAGATAAGATCACAAAAAGTTCAGCCATACTGGCATCAAATACAAGTTCCATCTCCATTACTCGTCTGGCATCAGCAACTAGCAGACCAAAGCAGGTGATTGGCATGCACTTTATGAACCCTCCTCCTATAATGAAACTTGTTGAGATTGTGCGAGGAGCAGACACATCAGATGAGACTTTTCATGCTACAAAAACATTGGCAGAAAGGTTTGGGAAGACAGTAATATGCTCTCGAGATTATGCCGGCTTTGTTGTGAATAGGATCCTGATGCCGATGATAAATGAAGCATTTTTTACACTGTATACTGGTGTGGCAACAAAGGAAGATATCGATGTGGGAATGAAGTTGGGAACAAATCATCCAATGGGTCCTTTAGAGCTTGCAGATTTCATTGGATTAGATGTCTGCTTATCAATTATGAAAGTTCTCCATGCTGACCTTGGCGACAATAAATATGCTCCCTGCCCACTTCTTGTACAGTATGTTGATGCAGGTCGGCTCGGAAGAAAACGAGGTATTGGGGTATACGATTATCGTCAAATGCCCAAGGCAATAAAACCTTCTCCCAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00362 ko00650 ko01100 ko01120 map00360 map00362 map00650 map01100 map01120
Pfam Domains
Protein Families
3HCDH 3HCDH_N

Protein Analysis

298

Amino Acids

32.18

Weight (kDa)

8.93

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
3HCDH_N PF02737 7 - 185 1.5e-63 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH PF00725 188 - 284 2.6e-35 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15290 AT3G15290
fragaria_vesca FvH4_3g19690
malus_domestica MD11G1251600.v1.1
prunus_persica Prupe.4G177500_v2.0.a1 Prupe.4G177500_v2.0.a1
pyrus_communis pycom11g22290
rosa_chinensis RchiOBHm_Chr5g0032991
rosa_laevigata RLG00000033441
rosa_multiflora Rmu_sc0000986.1_g000019
rosa_roxburghii Rroxscaffold_1G00047050
rosa_rugosa Rorug05G0134700
rosa_samantha Rh5AG227600 Rh5BG229100 Rh5DG233800
rosa_wichuraiana Rw5G020840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 400
Acc36I ACCTGC 2 cut(s) 400, 800
AccI GTMKAC 3 cut(s) 224, 620, 843
AciI CCGC 4 cut(s) 36, 39, 72, 220
AclWI GGATC 2 cut(s) 574, 587
AcoI YGGCCR 1 cut(s) 40
AcuI CTGAAG 2 cut(s) 234, 306
AfaI GTAC 1 cut(s) 795
AgsI TTSAA 2 cut(s) 269, 314
AjnI CCWGG 2 cut(s) 99, 186
AleI CACNNNNGTG 1 cut(s) 84
AloI GAACNNNNNNTCC 2 cut(s) 661, 693
AluBI AGCT 3 cut(s) 150, 697, 889
AluI AGCT 3 cut(s) 150, 697, 889
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 2 cut(s) 574, 587
Ama87I CYCGRG 1 cut(s) 549
AoxI GGCC 2 cut(s) 40, 211
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 211, 686
AsuHPI GGTGA 2 cut(s) 175, 424
AvaI CYCGRG 1 cut(s) 549
AvaII GGWCC 1 cut(s) 686
BamHI GGATCC 1 cut(s) 579
BbsI GAAGAC 2 cut(s) 23, 539
Bbv12I GWGCWC 1 cut(s) 121
BccI CCATC 3 cut(s) 149, 161, 374
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 2 cut(s) 101, 188
BciVI GTATCC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 163
BfuAI ACCTGC 2 cut(s) 400, 800
BfuI GTATCC 1 cut(s) 97
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 3 cut(s) 37, 40, 72
BlsI GCNGC 3 cut(s) 38, 41, 73
Bme1390I CCNGG 2 cut(s) 101, 188
Bme18I GGWCC 1 cut(s) 686
BmeT110I CYCGRG 1 cut(s) 549
BmgT120I GGNCC 2 cut(s) 211, 686
BmiI GGNNCC 3 cut(s) 98, 581, 687
BmrFI CCNGG 2 cut(s) 101, 188
BmsI GCATC 6 cut(s) 79, 193, 359, 395, 576, 796
BpiI GAAGAC 2 cut(s) 23, 539
BpmI CTGGAG 1 cut(s) 130
Bsa29I ATCGAT 1 cut(s) 648
BsaJI CCNNGG 3 cut(s) 186, 757, 864
Bse118I RCCGGY 1 cut(s) 560
Bse1I ACTGG 2 cut(s) 351, 628
BseBI CCWGG 2 cut(s) 101, 188
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 3 cut(s) 186, 757, 864
BseGI GGATG 3 cut(s) 89, 153, 676
BseNI ACTGG 2 cut(s) 351, 628
BseRI GAGGAG 2 cut(s) 429, 486
BshFI GGCC 2 cut(s) 42, 213
BshVI ATCGAT 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 1 cut(s) 561
BsmAI GTCTC 1 cut(s) 485
BsnI GGCC 2 cut(s) 42, 213
BsoBI CYCGRG 1 cut(s) 549
Bsp1286I GDGCHC 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 793
Bsp143I GATC 3 cut(s) 3, 324, 579
BspACI CCGC 4 cut(s) 36, 39, 72, 220
BspANI GGCC 2 cut(s) 42, 213
BspDI ATCGAT 1 cut(s) 648
BspLI GGNNCC 3 cut(s) 98, 581, 687
BspMI ACCTGC 2 cut(s) 400, 800
BspPI GGATC 2 cut(s) 574, 587
BsrFI RCCGGY 1 cut(s) 560
BsrGI TGTACA 1 cut(s) 793
BsrI ACTGG 2 cut(s) 351, 628
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 3 cut(s) 186, 757, 864
BssMI GATC 3 cut(s) 3, 324, 579
BssNAI GTATAC 3 cut(s) 225, 621, 844
BssT1I CCWWGG 2 cut(s) 757, 864
Bst1107I GTATAC 3 cut(s) 225, 621, 844
Bst2UI CCWGG 2 cut(s) 101, 188
Bst4CI ACNGT 3 cut(s) 538, 618, 798
BstAUI TGTACA 1 cut(s) 793
BstC8I GCNNGC 3 cut(s) 422, 562, 699
BstF5I GGATG 3 cut(s) 89, 153, 676
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 3 cut(s) 6, 327, 582
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 3 cut(s) 3, 324, 579
BstMWI GCNNNNNNNGC 2 cut(s) 68, 347
BstNI CCWGG 2 cut(s) 101, 188
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 99, 186
BstV2I GAAGAC 2 cut(s) 23, 539
BstX2I RGATCY 1 cut(s) 579
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 1 cut(s) 579
BstZ17I GTATAC 3 cut(s) 225, 621, 844
Bsu15I ATCGAT 1 cut(s) 648
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 42, 213
BsuTUI ATCGAT 1 cut(s) 648
BtsCI GGATG 3 cut(s) 89, 153, 676
BtsIMutI CAGTG 1 cut(s) 614
BveI ACCTGC 2 cut(s) 400, 800
Cac8I GCNNGC 3 cut(s) 422, 562, 699
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 2 cut(s) 211, 686
ClaI ATCGAT 1 cut(s) 648
Csp6I GTAC 1 cut(s) 794
CviAII CATG 4 cut(s) 76, 421, 500, 749
CviQI GTAC 1 cut(s) 794
DpnI GATC 3 cut(s) 5, 326, 581
DpnII GATC 3 cut(s) 3, 324, 579
EaeI YGGCCR 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 757, 864
Eco32I GATATC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 686
Eco57I CTGAAG 2 cut(s) 234, 306
Eco88I CYCGRG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 686
EcoRII CCWGG 2 cut(s) 99, 186
EcoRV GATATC 1 cut(s) 646
EcoT14I CCWWGG 2 cut(s) 757, 864
ErhI CCWWGG 2 cut(s) 757, 864
FaeI CATG 4 cut(s) 79, 424, 503, 752
FatI CATG 4 cut(s) 75, 420, 499, 748
FblI GTMKAC 3 cut(s) 224, 620, 843
Fnu4HI GCNGC 3 cut(s) 37, 40, 72
FokI GGATG 3 cut(s) 96, 140, 663
Fsp4HI GCNGC 3 cut(s) 37, 40, 72
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 161
GluI GCNGC 3 cut(s) 37, 40, 72
GsuI CTGGAG 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 2 cut(s) 42, 213
HapII CCGG 1 cut(s) 561
HhaI GCGC 1 cut(s) 162
Hin1II CATG 4 cut(s) 79, 424, 503, 752
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 887
HinfI GANTC 1 cut(s) 281
HpaII CCGG 1 cut(s) 561
HphI GGTGA 2 cut(s) 175, 424
Hpy166II GTNNAC 3 cut(s) 225, 621, 844
Hpy188I TCNGA 5 cut(s) 10, 123, 286, 487, 821
Hpy188III TCNNGA 4 cut(s) 54, 549, 551, 583
Hpy8I GTNNAC 3 cut(s) 225, 621, 844
HpyAV CCTTC 1 cut(s) 888
HpyCH4III ACNGT 3 cut(s) 538, 618, 798
HpyCH4V TGCA 5 cut(s) 79, 238, 424, 701, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 347
Hsp92II CATG 4 cut(s) 79, 424, 503, 752
HspAI GCGC 1 cut(s) 160
KroI GCCGGC 1 cut(s) 560
KroNI GCCGGC 1 cut(s) 562
Kzo9I GATC 3 cut(s) 3, 324, 579
LmnI GCTCC 4 cut(s) 102, 155, 473, 781
LweI GCATC 6 cut(s) 79, 193, 359, 395, 576, 796
MaeI CTAG 1 cut(s) 396
MalI GATC 3 cut(s) 5, 326, 581
MboI GATC 3 cut(s) 3, 324, 579
MboII GAAGA 7 cut(s) 28, 240, 299, 307, 544, 653, 834
MflI RGATCY 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 1 cut(s) 732
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 7 cut(s) 142, 173, 238, 447, 450, 464, 824
MroNI GCCGGC 1 cut(s) 560
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 561
MspR9I CCNGG 2 cut(s) 101, 188
MvaI CCWGG 2 cut(s) 101, 188
MwoI GCNNNNNNNGC 2 cut(s) 68, 347
NaeI GCCGGC 1 cut(s) 562
NdeII GATC 3 cut(s) 3, 324, 579
NgoMIV GCCGGC 1 cut(s) 560
NlaIII CATG 4 cut(s) 79, 424, 503, 752
NlaIV GGNNCC 3 cut(s) 98, 581, 687
NspI RCATGY 1 cut(s) 424
OliI CACNNNNGTG 1 cut(s) 84
PaeI GCATGC 1 cut(s) 424
PaeR7I CTCGAG 1 cut(s) 549
PaqCI CACCTGC 1 cut(s) 400
PdiI GCCGGC 1 cut(s) 562
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 3 cut(s) 38, 41, 73
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PpuMI RGGWCCY 1 cut(s) 686
Psp5II RGGWCCY 1 cut(s) 686
Psp6I CCWGG 2 cut(s) 99, 186
PspGI CCWGG 2 cut(s) 99, 186
PspN4I GGNNCC 3 cut(s) 98, 581, 687
PspPI GGNCC 2 cut(s) 211, 686
PspPPI RGGWCCY 1 cut(s) 686
PsuI RGATCY 1 cut(s) 579
RsaI GTAC 1 cut(s) 795
RsaNI GTAC 1 cut(s) 794
RseI CAYNNNNRTG 1 cut(s) 84
SatI GCNGC 3 cut(s) 37, 40, 72
Sau3AI GATC 3 cut(s) 3, 324, 579
Sau96I GGNCC 2 cut(s) 211, 686
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 101, 188
SduI GDGCHC 1 cut(s) 121
SfaNI GCATC 6 cut(s) 79, 193, 359, 395, 576, 796
Sfr274I CTCGAG 1 cut(s) 549
SinI GGWCC 1 cut(s) 686
SlaI CTCGAG 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
SphI GCATGC 1 cut(s) 424
Sse9I AATT 1 cut(s) 732
SsiI CCGC 4 cut(s) 36, 39, 72, 220
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 99, 186
StyI CCWWGG 2 cut(s) 757, 864
TaaI ACNGT 3 cut(s) 538, 618, 798
TaqI TCGA 2 cut(s) 550, 648
TasI AATT 1 cut(s) 732
TatI WGTACW 1 cut(s) 793
TauI GCSGC 3 cut(s) 39, 42, 74
TscAI CASTG 1 cut(s) 621
TspDTI ATGAA 8 cut(s) 29, 446, 464, 488, 615, 674, 697, 752
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 1 cut(s) 621
VpaK11BI GGWCC 1 cut(s) 686
XceI RCATGY 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 2 cut(s) 379, 755
XhoI CTCGAG 1 cut(s) 549
XmiI GTMKAC 3 cut(s) 224, 620, 843
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.