Rmu_sc0000986.1_g000019

3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000986.1
OG0015035
Physical Location & Seq
Reverse (-)
100118 .. 102213
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000986.1_g000019.1.cds

Sequence Viewer

Length: 882 bp
atgaagtcaattgcggtggtgggcggcggccaaatgggttcaggtatagcccaactcgccgccatgcacggatgcgatgcttggctcctagacaccgaccctagtgctctaaccagagccaacaagtccatctcccactccatccagcgcctcgtttccaaaggacaactcactcaggctgttggtaaagatgctttgggccgtctgcggtatacctcaaacttgcaagaactttcttcagcagatgttattattgaagctattgtggagtctgaagatgtgaagaaaaagctatttattgaactagataagatcacaaaaagttctgccatactggcatctaatacaagttccatctccattactcgtctggcatcagcaactagcaggccaaagcaggtgattggcatgcattttatgaaccctcctcctataatgaaacttgttgagatcgtgcgaggagcagacacatccgatgagacttttaatgctacgaaagcattggcagaaaggtttggcaagacagtgatatgctctcgggattatgccggctttgttgtaaacaggatcctaatgccgatgataaatgaagcattttttacactctataccggtgtggcaacaaaggaagacattgatgtgggaatgaagttgggaacaaatcatccaatgggtcctttagagcttgcagatttcattggattggatgtctgcttatcaatcatgaaagttctccatgctggccttggcgacagtaaatatgctccctgcccacttcttgtacagtatgttgatgcaggtcgactcggaagaaaacgaggtattggggtatacgattatcgtcaaatgcctgatgcagtaaaaccttcttcgaagctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00362 ko00650 ko01100 ko01120 map00360 map00362 map00650 map01100 map01120
Pfam Domains
Protein Families
3HCDH 3HCDH_N

Protein Analysis

293

Amino Acids

31.61

Weight (kDa)

8.94

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15290 AT3G15290
fragaria_vesca FvH4_3g19690
malus_domestica MD11G1251600.v1.1
prunus_persica Prupe.4G177500_v2.0.a1 Prupe.4G177500_v2.0.a1
pyrus_communis pycom11g22290
rosa_chinensis RchiOBHm_Chr5g0032991
rosa_laevigata RLG00000033441
rosa_multiflora Rmu_sc0000986.1_g000019
rosa_roxburghii Rroxscaffold_1G00047050
rosa_rugosa Rorug05G0134700
rosa_samantha Rh5AG227600 Rh5BG229100 Rh5DG233800
rosa_wichuraiana Rw5G020840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 388
Acc36I ACCTGC 2 cut(s) 388, 788
AccI GTMKAC 3 cut(s) 212, 802, 831
AciI CCGC 5 cut(s) 14, 24, 27, 60, 208
AclWI GGATC 2 cut(s) 562, 575
AcoI YGGCCR 1 cut(s) 28
AcuI CTGAAG 2 cut(s) 222, 294
AfaI GTAC 1 cut(s) 783
AgeI ACCGGT 1 cut(s) 611
AgsI TTSAA 2 cut(s) 257, 302
AloI GAACNNNNNNTCC 2 cut(s) 649, 681
AluBI AGCT 4 cut(s) 260, 292, 685, 877
AluI AGCT 4 cut(s) 260, 292, 685, 877
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 2 cut(s) 562, 575
Ama87I CYCGRG 1 cut(s) 537
AoxI GGCC 4 cut(s) 28, 199, 389, 742
AsiGI ACCGGT 1 cut(s) 611
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 2 cut(s) 199, 674
AsuHPI GGTGA 1 cut(s) 412
AsuII TTCGAA 1 cut(s) 872
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 1 cut(s) 674
BamHI GGATCC 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 109
BccI CCATC 3 cut(s) 137, 149, 362
BceAI ACGGC 1 cut(s) 186
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 4 cut(s) 89, 102, 305, 384
BfoI RGCGCY 1 cut(s) 151
BfuAI ACCTGC 2 cut(s) 388, 788
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 3 cut(s) 25, 28, 60
BlsI GCNGC 3 cut(s) 26, 29, 61
Bme18I GGWCC 1 cut(s) 674
BmeT110I CYCGRG 1 cut(s) 537
BmgT120I GGNCC 2 cut(s) 199, 674
BmiI GGNNCC 3 cut(s) 86, 569, 675
BmsI GCATC 7 cut(s) 62, 67, 181, 347, 383, 784, 844
BpiI GAAGAC 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 872
BsaJI CCNNGG 1 cut(s) 745
BsaWI WCCGGW 1 cut(s) 611
Bse118I RCCGGY 2 cut(s) 548, 611
Bse1I ACTGG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 745
BseGI GGATG 5 cut(s) 77, 141, 470, 664, 712
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 2 cut(s) 417, 474
BshFI GGCC 4 cut(s) 30, 201, 391, 744
BshTI ACCGGT 1 cut(s) 611
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 537
BsiSI CCGG 2 cut(s) 549, 612
BsmAI GTCTC 1 cut(s) 473
BsnI GGCC 4 cut(s) 30, 201, 391, 744
BsoBI CYCGRG 1 cut(s) 537
Bsp119I TTCGAA 1 cut(s) 872
Bsp1286I GDGCHC 1 cut(s) 109
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 3 cut(s) 312, 450, 567
BspACI CCGC 5 cut(s) 14, 24, 27, 60, 208
BspANI GGCC 4 cut(s) 30, 201, 391, 744
BspCNI CTCAG 1 cut(s) 187
BspHI TCATGA 1 cut(s) 723
BspLI GGNNCC 3 cut(s) 86, 569, 675
BspMI ACCTGC 2 cut(s) 388, 788
BspPI GGATC 2 cut(s) 562, 575
BspT104I TTCGAA 1 cut(s) 872
BsrFI RCCGGY 2 cut(s) 548, 611
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 2 cut(s) 548, 611
BssECI CCNNGG 1 cut(s) 745
BssMI GATC 3 cut(s) 312, 450, 567
BssNAI GTATAC 2 cut(s) 213, 832
BssT1I CCWWGG 1 cut(s) 745
Bst1107I GTATAC 2 cut(s) 213, 832
Bst4CI ACNGT 3 cut(s) 526, 755, 786
BstAUI TGTACA 1 cut(s) 781
BstBI TTCGAA 1 cut(s) 872
BstC8I GCNNGC 5 cut(s) 389, 410, 550, 687, 742
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 5 cut(s) 77, 141, 470, 664, 712
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 3 cut(s) 315, 453, 570
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 3 cut(s) 312, 450, 567
BstMWI GCNNNNNNNGC 3 cut(s) 56, 335, 497
BstNSI RCATGY 1 cut(s) 412
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 567
BstYI RGATCY 1 cut(s) 567
BstZ17I GTATAC 2 cut(s) 213, 832
BsuRI GGCC 4 cut(s) 30, 201, 391, 744
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 5 cut(s) 77, 141, 470, 664, 712
BtsIMutI CAGTG 1 cut(s) 531
BveI ACCTGC 2 cut(s) 388, 788
Cac8I GCNNGC 5 cut(s) 389, 410, 550, 687, 742
CciI TCATGA 1 cut(s) 723
CfoI GCGC 1 cut(s) 150
Cfr10I RCCGGY 2 cut(s) 548, 611
Cfr13I GGNCC 2 cut(s) 199, 674
Csp6I GTAC 1 cut(s) 782
CspAI ACCGGT 1 cut(s) 611
CspCI CAANNNNNGTGG 1 cut(s) 32
CviAII CATG 4 cut(s) 64, 409, 724, 737
CviQI GTAC 1 cut(s) 782
DdeI CTNAG 1 cut(s) 174
DpnI GATC 3 cut(s) 314, 452, 569
DpnII GATC 3 cut(s) 312, 450, 567
EaeI YGGCCR 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 674
Eco57I CTGAAG 2 cut(s) 222, 294
Eco88I CYCGRG 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 674
EcoT14I CCWWGG 1 cut(s) 745
EcoT22I ATGCAT 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 4 cut(s) 67, 412, 727, 740
FatI CATG 4 cut(s) 63, 408, 723, 736
FblI GTMKAC 3 cut(s) 212, 802, 831
Fnu4HI GCNGC 3 cut(s) 25, 28, 60
FokI GGATG 5 cut(s) 84, 128, 457, 651, 719
Fsp4HI GCNGC 3 cut(s) 25, 28, 60
FspBI CTAG 4 cut(s) 89, 102, 305, 384
GlaI GCGC 1 cut(s) 149
GluI GCNGC 3 cut(s) 25, 28, 60
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 4 cut(s) 30, 201, 391, 744
HapII CCGG 2 cut(s) 549, 612
HhaI GCGC 1 cut(s) 150
Hin1II CATG 4 cut(s) 67, 412, 727, 740
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 1 cut(s) 803
HindII GTYRAC 1 cut(s) 803
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 2 cut(s) 269, 804
HpaII CCGG 2 cut(s) 549, 612
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 4 cut(s) 213, 562, 803, 832
Hpy188I TCNGA 3 cut(s) 274, 475, 809
Hpy188III TCNNGA 2 cut(s) 539, 724
Hpy8I GTNNAC 4 cut(s) 213, 562, 803, 832
HpyAV CCTTC 1 cut(s) 876
HpyCH4III ACNGT 3 cut(s) 526, 755, 786
HpyCH4V TGCA 6 cut(s) 67, 226, 412, 689, 797, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 335, 497
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 4 cut(s) 67, 412, 727, 740
HspAI GCGC 1 cut(s) 148
KroI GCCGGC 1 cut(s) 548
KroNI GCCGGC 1 cut(s) 550
Kzo9I GATC 3 cut(s) 312, 450, 567
LmnI GCTCC 3 cut(s) 90, 461, 769
LweI GCATC 7 cut(s) 62, 67, 181, 347, 383, 784, 844
MaeI CTAG 4 cut(s) 89, 102, 305, 384
MalI GATC 3 cut(s) 314, 452, 569
MboI GATC 3 cut(s) 312, 450, 567
MboII GAAGA 6 cut(s) 228, 287, 295, 641, 822, 861
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 1 cut(s) 9
MlyI GAGTC 2 cut(s) 278, 798
MnlI CCTC 6 cut(s) 161, 226, 435, 438, 452, 812
Mph1103I ATGCAT 1 cut(s) 414
MroNI GCCGGC 1 cut(s) 548
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 1 cut(s) 638
MspI CCGG 2 cut(s) 549, 612
MunI CAATTG 1 cut(s) 9
MwoI GCNNNNNNNGC 3 cut(s) 56, 335, 497
NaeI GCCGGC 1 cut(s) 550
NdeII GATC 3 cut(s) 312, 450, 567
NgoMIV GCCGGC 1 cut(s) 548
NlaIII CATG 4 cut(s) 67, 412, 727, 740
NlaIV GGNNCC 3 cut(s) 86, 569, 675
NsiI ATGCAT 1 cut(s) 414
NspI RCATGY 1 cut(s) 412
NspV TTCGAA 1 cut(s) 872
PaeI GCATGC 1 cut(s) 412
PagI TCATGA 1 cut(s) 723
PaqCI CACCTGC 1 cut(s) 388
PdiI GCCGGC 1 cut(s) 550
PinAI ACCGGT 1 cut(s) 611
PkrI GCNGC 3 cut(s) 26, 29, 61
PleI GAGTC 2 cut(s) 277, 798
PpsI GAGTC 2 cut(s) 277, 798
PpuMI RGGWCCY 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 674
PspN4I GGNNCC 3 cut(s) 86, 569, 675
PspPI GGNCC 2 cut(s) 199, 674
PspPPI RGGWCCY 1 cut(s) 674
PsuI RGATCY 1 cut(s) 567
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
RseI CAYNNNNRTG 1 cut(s) 638
SalI GTCGAC 1 cut(s) 801
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 3 cut(s) 25, 28, 60
Sau3AI GATC 3 cut(s) 312, 450, 567
Sau96I GGNCC 2 cut(s) 199, 674
SchI GAGTC 2 cut(s) 278, 798
SduI GDGCHC 1 cut(s) 109
SfaNI GCATC 7 cut(s) 62, 67, 181, 347, 383, 784, 844
SfuI TTCGAA 1 cut(s) 872
SinI GGWCC 1 cut(s) 674
SmiMI CAYNNNNRTG 1 cut(s) 638
SphI GCATGC 1 cut(s) 412
Sse9I AATT 1 cut(s) 9
SsiI CCGC 5 cut(s) 14, 24, 27, 60, 208
SspMI CTAG 4 cut(s) 89, 102, 305, 384
StyI CCWWGG 1 cut(s) 745
TaaI ACNGT 3 cut(s) 526, 755, 786
TaqI TCGA 2 cut(s) 802, 872
TasI AATT 1 cut(s) 9
TatI WGTACW 1 cut(s) 781
TauI GCSGC 3 cut(s) 27, 30, 62
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 531
TspDTI ATGAA 7 cut(s) 17, 434, 452, 603, 662, 685, 740
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 531
VpaK11BI GGWCC 1 cut(s) 674
XceI RCATGY 1 cut(s) 412
XcmI CCANNNNNNNNNTGG 2 cut(s) 367, 743
XmiI GTMKAC 3 cut(s) 212, 802, 831
XspI CTAG 4 cut(s) 89, 102, 305, 384
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.