RLG00000033441

3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015035
Physical Location & Seq
Forward (+)
27233576 .. 27235637
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033441

Sequence Viewer

Length: 891 bp
ATGTCGGAGATGAAGTCAATTGCGGTGGTGGGCGCCGGCCAAATGGGTTCAGGTATAGCTCAACTCGCCGCCATGCACGGATGCGATGCTTGGCTCCTAGACACTGACCCTAGTGCTCTAACCAGAGCCAACAAGTCGATCTCCCACTCCATCCAGCGCCTCGTTTCCAAAGGACAACTCACTCAGGCTGTTGGTAAAGATGCTTTGGGCCGTCTGCGGTATACCTCAAACTTGCAAGAACTTTCTTCAGCAGATGTTATTATTGAAGCTATTGTGGAGTCTGAAGATGTGAAGAAAAAGCTATTTATTGAACTAGATAAGATCACAAAAAGTTCTGCCATACTGGCGTCTAATACGAGTTCCATCTCCATTACTCGTCTGGCATCAGCAACTAGCAGGCCAAACCAGGTGATTGGCATGCATTTTATGAACCCTCCTCCTATAATGAAACTTGTTGAGATCGTGCGAGGGGCAGACACATCAGATGAGACTTTTAATGCTACAGAAGCATTGGCAGAAAGGTTTGGCAAGACAGTGATATGCTCTCGGGATTATGCTGGCTTTGTTGTAAACAGGATCCTAATGCCGATGATAAATGAAGCATTTTTTACACTGTATACTGGTGTGGCAACAAAGGAAGACATTGATGTGGGAATGAAGTTGGGAACAAATCATCCAATGGGTCCTTTAGAGCTTGCAGATTTCATTGGATTGGATGTCTGCTTATCAATCATGAAAGTTCTCCATGCTGGCCTTGGCGACAGTAAATATGCTCCCTGCCCACTTCTTATACAGTATGTTGATGCAGGTCGACTCGGAAGAAAACGAGGTATTGGGGTATACGATTATCGTCAAATGCCTGATGCAGTAAAACCTTCTTCCAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00362 ko00650 ko01100 ko01120 map00360 map00362 map00650 map01100 map01120
Pfam Domains
Protein Families
3HCDH 3HCDH_N

Protein Analysis

297

Amino Acids

31.97

Weight (kDa)

7.66

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
3HCDH_N PF02737 7 - 184 4.5e-64 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH PF00725 187 - 283 4.9e-35 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15290 AT3G15290
fragaria_vesca FvH4_3g19690
malus_domestica MD11G1251600.v1.1
prunus_persica Prupe.4G177500_v2.0.a1 Prupe.4G177500_v2.0.a1
pyrus_communis pycom11g22290
rosa_chinensis RchiOBHm_Chr5g0032991
rosa_laevigata RLG00000033441
rosa_multiflora Rmu_sc0000986.1_g000019
rosa_roxburghii Rroxscaffold_1G00047050
rosa_rugosa Rorug05G0134700
rosa_samantha Rh5AG227600 Rh5BG229100 Rh5DG233800
rosa_wichuraiana Rw5G020840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 797
AccB1I GGYRCC 1 cut(s) 32
AccI GTMKAC 4 cut(s) 221, 617, 811, 840
AciI CCGC 3 cut(s) 23, 69, 217
AclWI GGATC 2 cut(s) 571, 584
AcoI YGGCCR 1 cut(s) 37
AcuI CTGAAG 2 cut(s) 231, 303
AcyI GRCGYC 2 cut(s) 33, 347
AgsI TTSAA 2 cut(s) 266, 311
AjnI CCWGG 1 cut(s) 405
AloI GAACNNNNNNTCC 2 cut(s) 658, 690
AluBI AGCT 5 cut(s) 59, 269, 301, 694, 886
AluI AGCT 5 cut(s) 59, 269, 301, 694, 886
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 2 cut(s) 571, 584
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 4 cut(s) 37, 208, 398, 751
AspLEI GCGC 2 cut(s) 35, 159
AspS9I GGNCC 2 cut(s) 208, 683
AsuHPI GGTGA 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 1 cut(s) 683
BamHI GGATCC 1 cut(s) 576
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 118
BccI CCATC 2 cut(s) 158, 371
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 4 cut(s) 98, 111, 314, 393
BfmI CTRYAG 1 cut(s) 501
BfoI RGCGCY 2 cut(s) 36, 160
BfuAI ACCTGC 1 cut(s) 797
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 683
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 2 cut(s) 208, 683
BmiI GGNNCC 4 cut(s) 34, 95, 578, 684
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 6 cut(s) 71, 76, 190, 392, 793, 853
BpiI GAAGAC 1 cut(s) 645
BsaHI GRCGYC 2 cut(s) 33, 347
BsaJI CCNNGG 1 cut(s) 754
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 348, 625
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 754
BseGI GGATG 4 cut(s) 86, 150, 673, 721
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 2 cut(s) 348, 625
BseRI GAGGAG 1 cut(s) 426
BshFI GGCC 4 cut(s) 39, 210, 400, 753
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 482
BsnI GGCC 4 cut(s) 39, 210, 400, 753
BsoBI CYCGRG 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 4 cut(s) 138, 321, 459, 576
BspACI CCGC 3 cut(s) 23, 69, 217
BspANI GGCC 4 cut(s) 39, 210, 400, 753
BspCNI CTCAG 1 cut(s) 196
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 4 cut(s) 34, 95, 578, 684
BspMI ACCTGC 1 cut(s) 797
BspPI GGATC 2 cut(s) 571, 584
BspT107I GGYRCC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 2 cut(s) 348, 625
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 754
BssMI GATC 4 cut(s) 138, 321, 459, 576
BssNAI GTATAC 3 cut(s) 222, 618, 841
BssNI GRCGYC 2 cut(s) 33, 347
BssT1I CCWWGG 1 cut(s) 754
Bst1107I GTATAC 3 cut(s) 222, 618, 841
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 4 cut(s) 535, 615, 764, 795
BstACI GRCGYC 2 cut(s) 33, 347
BstC8I GCNNGC 6 cut(s) 37, 398, 419, 559, 696, 751
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 4 cut(s) 86, 150, 673, 721
BstH2I RGCGCY 2 cut(s) 36, 160
BstHHI GCGC 2 cut(s) 35, 159
BstKTI GATC 4 cut(s) 141, 324, 462, 579
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 4 cut(s) 138, 321, 459, 576
BstMWI GCNNNNNNNGC 3 cut(s) 65, 344, 506
BstNI CCWGG 1 cut(s) 407
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 405
BstSFI CTRYAG 1 cut(s) 501
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 1 cut(s) 576
BstXI CCANNNNNNTGG 1 cut(s) 413
BstYI RGATCY 1 cut(s) 576
BstZ17I GTATAC 3 cut(s) 222, 618, 841
BsuRI GGCC 4 cut(s) 39, 210, 400, 753
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 4 cut(s) 86, 150, 673, 721
BtsIMutI CAGTG 3 cut(s) 102, 540, 611
BveI ACCTGC 1 cut(s) 797
Cac8I GCNNGC 6 cut(s) 37, 398, 419, 559, 696, 751
CciI TCATGA 1 cut(s) 732
CfoI GCGC 2 cut(s) 35, 159
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 2 cut(s) 208, 683
CseI GACGC 1 cut(s) 336
CsiI ACCWGGT 1 cut(s) 405
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 4 cut(s) 73, 418, 733, 746
DdeI CTNAG 1 cut(s) 183
DinI GGCGCC 1 cut(s) 34
DpnI GATC 4 cut(s) 140, 323, 461, 578
DpnII GATC 4 cut(s) 138, 321, 459, 576
EaeI YGGCCR 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 754
Eco47I GGWCC 1 cut(s) 683
Eco57I CTGAAG 2 cut(s) 231, 303
Eco88I CYCGRG 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 754
EcoT22I ATGCAT 1 cut(s) 423
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 754
FaeI CATG 4 cut(s) 76, 421, 736, 749
FatI CATG 4 cut(s) 72, 417, 732, 745
FblI GTMKAC 4 cut(s) 221, 617, 811, 840
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 4 cut(s) 93, 137, 660, 728
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 4 cut(s) 98, 111, 314, 393
GlaI GCGC 2 cut(s) 34, 158
GluI GCNGC 1 cut(s) 69
HaeII RGCGCY 2 cut(s) 36, 160
HaeIII GGCC 4 cut(s) 39, 210, 400, 753
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 336
HhaI GCGC 2 cut(s) 35, 159
Hin1I GRCGYC 2 cut(s) 33, 347
Hin1II CATG 4 cut(s) 76, 421, 736, 749
Hin6I GCGC 2 cut(s) 33, 157
HinP1I GCGC 2 cut(s) 33, 157
HincII GTYRAC 1 cut(s) 812
HindII GTYRAC 1 cut(s) 812
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 2 cut(s) 278, 813
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 5 cut(s) 222, 571, 618, 812, 841
Hpy188I TCNGA 4 cut(s) 7, 283, 484, 818
Hpy188III TCNNGA 2 cut(s) 548, 733
Hpy8I GTNNAC 5 cut(s) 222, 571, 618, 812, 841
HpyAV CCTTC 1 cut(s) 885
HpyCH4III ACNGT 4 cut(s) 535, 615, 764, 795
HpyCH4V TGCA 6 cut(s) 76, 235, 421, 698, 806, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 344, 506
HpyF3I CTNAG 1 cut(s) 183
Hsp92I GRCGYC 2 cut(s) 33, 347
Hsp92II CATG 4 cut(s) 76, 421, 736, 749
HspAI GCGC 2 cut(s) 33, 157
KasI GGCGCC 1 cut(s) 32
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 4 cut(s) 138, 321, 459, 576
LmnI GCTCC 2 cut(s) 99, 778
LweI GCATC 6 cut(s) 71, 76, 190, 392, 793, 853
MabI ACCWGGT 1 cut(s) 405
MaeI CTAG 4 cut(s) 98, 111, 314, 393
MalI GATC 4 cut(s) 140, 323, 461, 578
MboI GATC 4 cut(s) 138, 321, 459, 576
MboII GAAGA 6 cut(s) 237, 296, 304, 650, 831, 870
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 1 cut(s) 18
Mly113I GGCGCC 1 cut(s) 33
MlyI GAGTC 2 cut(s) 287, 807
MnlI CCTC 6 cut(s) 170, 235, 444, 447, 461, 821
Mph1103I ATGCAT 1 cut(s) 423
MroNI GCCGGC 1 cut(s) 35
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 1 cut(s) 647
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 407
MunI CAATTG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 65, 344, 506
NaeI GCCGGC 1 cut(s) 37
NarI GGCGCC 1 cut(s) 33
NdeII GATC 4 cut(s) 138, 321, 459, 576
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 4 cut(s) 76, 421, 736, 749
NlaIV GGNNCC 4 cut(s) 34, 95, 578, 684
NsiI ATGCAT 1 cut(s) 423
NspI RCATGY 1 cut(s) 421
PaeI GCATGC 1 cut(s) 421
PagI TCATGA 1 cut(s) 732
PdiI GCCGGC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 2 cut(s) 286, 807
PluTI GGCGCC 1 cut(s) 36
PpsI GAGTC 2 cut(s) 286, 807
PpuMI RGGWCCY 1 cut(s) 683
Psp5II RGGWCCY 1 cut(s) 683
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 4 cut(s) 34, 95, 578, 684
PspPI GGNCC 2 cut(s) 208, 683
PspPPI RGGWCCY 1 cut(s) 683
PsuI RGATCY 1 cut(s) 576
RseI CAYNNNNRTG 1 cut(s) 647
SalI GTCGAC 1 cut(s) 810
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 4 cut(s) 138, 321, 459, 576
Sau96I GGNCC 2 cut(s) 208, 683
SchI GAGTC 2 cut(s) 287, 807
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 1 cut(s) 118
SexAI ACCWGGT 1 cut(s) 405
SfaNI GCATC 6 cut(s) 71, 76, 190, 392, 793, 853
SfcI CTRYAG 1 cut(s) 501
SfoI GGCGCC 1 cut(s) 34
SinI GGWCC 1 cut(s) 683
SmiMI CAYNNNNRTG 1 cut(s) 647
SphI GCATGC 1 cut(s) 421
Sse9I AATT 1 cut(s) 18
SsiI CCGC 3 cut(s) 23, 69, 217
SspDI GGCGCC 1 cut(s) 32
SspMI CTAG 4 cut(s) 98, 111, 314, 393
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 1 cut(s) 754
TaaI ACNGT 4 cut(s) 535, 615, 764, 795
TaqI TCGA 2 cut(s) 137, 811
TasI AATT 1 cut(s) 18
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 3 cut(s) 109, 540, 618
TspDTI ATGAA 7 cut(s) 26, 443, 461, 612, 671, 694, 749
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 3 cut(s) 109, 540, 618
VpaK11BI GGWCC 1 cut(s) 683
XceI RCATGY 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 2 cut(s) 376, 752
XmiI GTMKAC 4 cut(s) 221, 617, 811, 840
XspI CTAG 4 cut(s) 98, 111, 314, 393
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.