Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013986

Physical Location & Seq

Genomic Coordinates Forward (+)

5505360 .. 5507050

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCTGGAGTTGCCTTTGGTTCCTTTGATGATTCATTCAGCTTGGCTTCTCTAAGAGCTTACCTCGCTGAGTTCATCTCCACTTTACTCTTTGTTTTCGCTGGTGTTGGCTCTGCCATTGCCTACGCAAAGCTGACGTCGGACGCTGCTCTTGATACACCGGGACTAGTGGCCATCGCGGTTTGTCATGGTTTTGCTCTCTTCGTGGCCGTTGCAATCGGAGCCAACATCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGTCTTGCTGTCGGTGGTCAAATCACAGTCATCACCGGAGTTTTCTACTGGATCGCTCAGCTTCTCGGCTCCACCGCCGCTTGTTTCCTCCTTAAATACGTCACCGGTGGATTGGCGGTTCCAACCCACAGCGTTGCGGCTGGACTAGGATCGATAGAAGGAGTAGTGATGGAGATCATCATCACCTTCGCTTTGGTCTACACTGTCTACGCCACCGCCGCTGATCCCAAGAAGGGTTCTCTCGGAACCATCGCTCCTCTCGCCATTGGTCTTATCGTTGGTGCCAACATCCTCGCCGCCGGTCCATTCTCCGGTGGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCTGCCGGAGACTTCTCTGGTCACTGGGTCTACTGGGTTGGACCACTCATCGGTGGTGGACTTGCCGGACTTATCTACGGAAATGTCTTCATGGGTTCTTCCGAACATGTTCCTCTTGCTTCTGCTGATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009705 GO:0009941 GO:0012505 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042802 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

250

Amino Acids

25.03

Weight (kDa)

5.3

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 232	3.7e-79	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16240
fragaria_vesca	FvH4_6g31970
malus_domestica	MD09G1207400.v1.1 MD17G1188400.v1.1
prunus_persica	Prupe.3G063500_v2.0.a1
pyrus_communis	pycom17g19710
rosa_chinensis	RchiOBHm_Chr2g0139491
rosa_laevigata	RLG00000019814
rosa_multiflora	Rmu_sc0039402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105400
rosa_rugosa	Rorug02G0358200
rosa_samantha	Rh2AG407600 Rh2BG418300 Rh2CG393600 Rh2DG427000
rosa_wichuraiana	Rw2G033020 Rw2G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	545
AccI	GTMKAC	3 cut(s)	462, 471, 648
AccII	CGCG	1 cut(s)	179
AciI	CCGC	8 cut(s)	179, 339, 342, 380, 401, 480, 483, 561
AclWI	GGATC	5 cut(s)	323, 421, 482, 576, 589
AcoI	YGGCCR	3 cut(s)	171, 207, 238
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	497, 575, 668
AflIII	ACRYGT	1 cut(s)	724
AgeI	ACCGGT	1 cut(s)	368
AhlI	ACTAGT	1 cut(s)	166
AloI	GAACNNNNNNTCC	4 cut(s)	366, 398, 502, 534
AluBI	AGCT	5 cut(s)	42, 59, 133, 325, 614
AluI	AGCT	5 cut(s)	42, 59, 133, 325, 614
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	5 cut(s)	323, 421, 482, 576, 589
AoxI	GGCC	3 cut(s)	171, 207, 238
ApeKI	GCWGC	2 cut(s)	146, 620
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AsiGI	ACCGGT	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	726
AspS9I	GGNCC	3 cut(s)	566, 608, 659
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	3 cut(s)	289, 358, 439
AvaII	GGWCC	3 cut(s)	566, 608, 659
BalI	TGGCCA	2 cut(s)	173, 240
BamHI	GGATCC	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	697
BbvI	GCAGC	2 cut(s)	133, 607
BccI	CCATC	3 cut(s)	182, 427, 521
BceAI	ACGGC	2 cut(s)	194, 239
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	621
BcuI	ACTAGT	1 cut(s)	166
BfaI	CTAG	2 cut(s)	167, 410
BisI	GCNGC	6 cut(s)	147, 342, 402, 483, 561, 621
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	6 cut(s)	148, 343, 403, 484, 562, 622
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	3 cut(s)	566, 608, 659
BmgT120I	GGNCC	3 cut(s)	566, 608, 659
BmiI	GGNNCC	7 cut(s)	22, 223, 334, 384, 511, 547, 583
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	2 cut(s)	652, 661
BmuI	ACTGGG	2 cut(s)	652, 661
BpiI	GAAGAC	1 cut(s)	697
BplI	GAGNNNNNCTC	4 cut(s)	48, 80, 62, 94
BpmI	CTGGAG	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	416
BsaBI	GATNNNNATC	2 cut(s)	437, 443
BsaHI	GRCGYC	1 cut(s)	137
BsaWI	WCCGGW	4 cut(s)	233, 299, 368, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	497, 575, 668
Bse118I	RCCGGY	2 cut(s)	368, 563
Bse1I	ACTGG	3 cut(s)	317, 647, 656
Bse3DI	GCAATG	1 cut(s)	117
Bse8I	GATNNNNATC	2 cut(s)	437, 443
BseCI	ATCGAT	1 cut(s)	416
BseGI	GGATG	1 cut(s)	552
BseJI	GATNNNNATC	2 cut(s)	437, 443
BseLI	CCNNNNNNNGG	3 cut(s)	497, 575, 668
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	60, 335
BseNI	ACTGG	3 cut(s)	317, 647, 656
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	2 cut(s)	133, 607
BseYI	CCCAGC	2 cut(s)	250, 592
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	3 cut(s)	173, 209, 240
BshNI	GGYRCC	1 cut(s)	545
BshTI	ACCGGT	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	416
BsiSI	CCGG	8 cut(s)	161, 234, 300, 369, 564, 576, 624, 684
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	497, 575, 668
BsmAI	GTCTC	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	173, 209, 240
Bsp143I	GATC	5 cut(s)	315, 413, 438, 487, 581
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	8 cut(s)	179, 339, 342, 380, 401, 480, 483, 561
BspANI	GGCC	3 cut(s)	173, 209, 240
BspCNI	CTCAG	2 cut(s)	61, 334
BspDI	ATCGAT	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	7 cut(s)	22, 223, 334, 384, 511, 547, 583
BspPI	GGATC	5 cut(s)	323, 421, 482, 576, 589
BspT107I	GGYRCC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	2 cut(s)	368, 563
BsrI	ACTGG	3 cut(s)	317, 647, 656
BssAI	RCCGGY	2 cut(s)	368, 563
BssMI	GATC	5 cut(s)	315, 413, 438, 487, 581
BssNI	GRCGYC	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	292, 469
Bst6I	CTCTTC	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	137
BstDEI	CTNAG	3 cut(s)	53, 69, 321
BstF5I	GGATG	1 cut(s)	552
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	5 cut(s)	318, 416, 441, 490, 584
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	5 cut(s)	315, 413, 438, 487, 581
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 65, 221, 482, 524, 620
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	133, 607
BstV2I	GAAGAC	1 cut(s)	697
BstX2I	RGATCY	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	581
Bsu15I	ATCGAT	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	173, 209, 240
BsuTUI	ATCGAT	1 cut(s)	416
BtgZI	GCGATG	2 cut(s)	160, 499
BtsCI	GGATG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	465, 640
Cfr10I	RCCGGY	2 cut(s)	368, 563
Cfr13I	GGNCC	3 cut(s)	566, 608, 659
ClaI	ATCGAT	1 cut(s)	416
CseI	GACGC	1 cut(s)	152
CspAI	ACCGGT	1 cut(s)	368
CviAII	CATG	5 cut(s)	188, 242, 586, 709, 725
DdeI	CTNAG	3 cut(s)	53, 69, 321
DpnI	GATC	5 cut(s)	317, 415, 440, 489, 583
DpnII	GATC	5 cut(s)	315, 413, 438, 487, 581
EaeI	YGGCCR	3 cut(s)	171, 207, 238
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco47I	GGWCC	3 cut(s)	566, 608, 659
FaeI	CATG	5 cut(s)	191, 245, 589, 712, 728
FaiI	YATR	5 cut(s)	189, 243, 587, 710, 726
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	5 cut(s)	187, 241, 585, 708, 724
FblI	GTMKAC	3 cut(s)	462, 471, 648
Fnu4HI	GCNGC	6 cut(s)	147, 342, 402, 483, 561, 621
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	6 cut(s)	147, 342, 402, 483, 561, 621
FspBI	CTAG	2 cut(s)	167, 410
GluI	GCNGC	6 cut(s)	147, 342, 402, 483, 561, 621
GsaI	CCCAGC	2 cut(s)	254, 596
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	173, 209, 240
HapII	CCGG	8 cut(s)	161, 234, 300, 369, 564, 576, 624, 684
HgaI	GACGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	5 cut(s)	191, 245, 589, 712, 728
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	8 cut(s)	161, 234, 300, 369, 564, 576, 624, 684
HphI	GGTGA	3 cut(s)	289, 358, 439
Hpy166II	GTNNAC	5 cut(s)	247, 463, 472, 649, 677
Hpy188I	TCNGA	4 cut(s)	142, 221, 509, 721
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	5 cut(s)	247, 463, 472, 649, 677
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	3 cut(s)	416, 460, 490
HpyCH4III	ACNGT	2 cut(s)	292, 469
HpyCH4IV	ACGT	3 cut(s)	137, 363, 598
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 65, 221, 482, 524, 620
HpyF3I	CTNAG	3 cut(s)	53, 69, 321
HpySE526I	ACGT	3 cut(s)	137, 363, 598
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	5 cut(s)	191, 245, 589, 712, 728
Kzo9I	GATC	5 cut(s)	315, 413, 438, 487, 581
LmnI	GCTCC	3 cut(s)	221, 338, 523
Lsp1109I	GCAGC	2 cut(s)	133, 607
MaeI	CTAG	2 cut(s)	167, 410
MaeII	ACGT	3 cut(s)	137, 363, 598
MaeIII	GTNAC	3 cut(s)	256, 364, 638
MalI	GATC	5 cut(s)	317, 415, 440, 489, 583
MboI	GATC	5 cut(s)	315, 413, 438, 487, 581
MboII	GAAGA	3 cut(s)	193, 697, 708
MflI	RGATCY	1 cut(s)	581
MlsI	TGGCCA	2 cut(s)	173, 240
MluNI	TGGCCA	2 cut(s)	173, 240
MmeI	TCCRAC	3 cut(s)	120, 410, 637
MnlI	CCTC	5 cut(s)	74, 362, 531, 566, 741
Mox20I	TGGCCA	2 cut(s)	173, 240
MroXI	GAANNNNTTC	1 cut(s)	726
MscI	TGGCCA	2 cut(s)	173, 240
MseI	TTAA	1 cut(s)	357
Msp20I	TGGCCA	2 cut(s)	173, 240
MspA1I	CMGCKG	2 cut(s)	485, 614
MspI	CCGG	8 cut(s)	161, 234, 300, 369, 564, 576, 624, 684
MspR9I	CCNGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	6 cut(s)	11, 65, 221, 482, 524, 620
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	5 cut(s)	315, 413, 438, 487, 581
NlaIII	CATG	5 cut(s)	191, 245, 589, 712, 728
NlaIV	GGNNCC	7 cut(s)	22, 223, 334, 384, 511, 547, 583
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	256, 364, 638
NspI	RCATGY	1 cut(s)	728
PciI	ACATGT	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	1 cut(s)	32
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	6 cut(s)	148, 343, 403, 484, 562, 622
PscI	ACATGT	1 cut(s)	724
PspFI	CCCAGC	2 cut(s)	250, 592
PspN4I	GGNNCC	7 cut(s)	22, 223, 334, 384, 511, 547, 583
PspPI	GGNCC	3 cut(s)	566, 608, 659
PsuI	RGATCY	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	614
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	6 cut(s)	147, 342, 402, 483, 561, 621
Sau3AI	GATC	5 cut(s)	315, 413, 438, 487, 581
Sau96I	GGNCC	3 cut(s)	566, 608, 659
ScrFI	CCNGG	1 cut(s)	162
SgrAI	CRCCGGYG	1 cut(s)	368
SinI	GGWCC	3 cut(s)	566, 608, 659
SpeI	ACTAGT	1 cut(s)	166
SsiI	CCGC	8 cut(s)	179, 339, 342, 380, 401, 480, 483, 561
SspMI	CTAG	2 cut(s)	167, 410
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	292, 469
TaiI	ACGT	3 cut(s)	140, 366, 601
TaqI	TCGA	1 cut(s)	416
TauI	GCSGC	4 cut(s)	344, 404, 485, 563
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	2 cut(s)	472, 647
TseFI	GTSAC	3 cut(s)	256, 364, 638
TseI	GCWGC	2 cut(s)	146, 620
Tsp45I	GTSAC	3 cut(s)	256, 364, 638
TspDTI	ATGAA	4 cut(s)	24, 64, 602, 697
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	2 cut(s)	472, 647
VpaK11BI	GGWCC	3 cut(s)	566, 608, 659
XceI	RCATGY	1 cut(s)	728
XmiI	GTMKAC	3 cut(s)	462, 471, 648
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	2 cut(s)	167, 410
ZraI	GACGTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.