Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013986

Physical Location & Seq

Genomic Coordinates Forward (+)

61835736 .. 61838404

Gene Structure 2669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG427000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCAAGAATAGCATTTGGAAGGTTTAATGATTCTTTCAGTTTGGGGTCCTTTAAGGCATACGTTGCTGAGTTCATCTCAACCTTGCTCTTCGTTTTTGCAGGAGTTGGTTCAGCCATAGCTTACGACAAGTTGACATCCAATGCTGCTCTTGATCCTGCTGGACTCGTAGCCATTGCCATTTGCCATGGCTTTGCTCTCTTTGTTGCAGTTTCAGTTGGTGCCAACATCTCTGGGGGCCATGTGAACCCAGCTGTCACATTCGGATTGGCTCTTGGTGGCCAAATCACTATCCTCACTGGCATCTTCTACTGGATTGCCCAGCTTCTTGGTGCCATTGTTGCATGCTTCATCCTCAAGTTCGTCACCGGAGGCTTGACAATTCCTATCCACACTGTGGCTGCTGGAGTTGGAGCCATTGAAGGAGTTGTGTTTGAGATCATCATTACTTTTGCTTTGGTTTACACCGTCTATGCAACAGCAGCGGACCCCAAGAAGGGAGAAATAGGCATAATTGCTCCCATTGCCATTGGTTTCATTGTTGGGGCCAACATCTTGGCTGCAGGACCCTTCTCCGGCGGGTCAATGAACCCTGCCCGATCATTTGGACCCGCCGTTGTCAGCGGAGACTTCACCGACAACTGGATCTACTGGGTTGGACCCCTCATTGGTGGTGGTCTTGCTGGCCTTATCTATGGCAATGTATTCATTCACTCTGAGCACCAACCCTTAGTCAGTGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009705 GO:0009941 GO:0012505 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042802 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

248

Amino Acids

25.51

Weight (kDa)

5.62

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	15 - 232	1.6e-79	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16240
fragaria_vesca	FvH4_6g31970
malus_domestica	MD09G1207400.v1.1 MD17G1188400.v1.1
prunus_persica	Prupe.3G063500_v2.0.a1
pyrus_communis	pycom17g19710
rosa_chinensis	RchiOBHm_Chr2g0139491
rosa_laevigata	RLG00000019814
rosa_multiflora	Rmu_sc0039402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105400
rosa_rugosa	Rorug02G0358200
rosa_samantha	Rh2AG407600 Rh2BG418300 Rh2CG393600 Rh2DG427000
rosa_wichuraiana	Rw2G033020 Rw2G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	221, 332
AccB7I	CCANNNNNTGG	1 cut(s)	397
AciI	CCGC	4 cut(s)	485, 579, 612, 624
AclWI	GGATC	2 cut(s)	149, 653
AcoI	YGGCCR	1 cut(s)	280
AdeI	CACNNNGTG	1 cut(s)	397
AfiI	CCNNNNNNNGG	6 cut(s)	397, 496, 497, 575, 642, 668
AgsI	TTSAA	1 cut(s)	422
AluBI	AGCT	3 cut(s)	122, 254, 325
AluI	AGCT	3 cut(s)	122, 254, 325
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	2 cut(s)	149, 653
AoxI	GGCC	4 cut(s)	238, 280, 546, 685
ApeKI	GCWGC	4 cut(s)	146, 401, 482, 560
AspS9I	GGNCC	7 cut(s)	48, 238, 487, 546, 566, 608, 659
AsuHPI	GGTGA	2 cut(s)	358, 625
AvaII	GGWCC	5 cut(s)	48, 487, 566, 608, 659
BalI	TGGCCA	1 cut(s)	282
BanI	GGYRCC	2 cut(s)	221, 332
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	4 cut(s)	133, 388, 494, 547
BceAI	ACGGC	1 cut(s)	599
BcoDI	GTCTC	1 cut(s)	621
BfmI	CTRYAG	1 cut(s)	561
BisI	GCNGC	4 cut(s)	147, 402, 483, 561
BlsI	GCNGC	4 cut(s)	148, 403, 484, 562
Bme18I	GGWCC	5 cut(s)	48, 487, 566, 608, 659
BmgT120I	GGNCC	7 cut(s)	48, 238, 487, 546, 566, 608, 659
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	661
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	6 cut(s)	397, 496, 497, 575, 642, 668
Bse1I	ACTGG	4 cut(s)	304, 317, 647, 656
Bse3DI	GCAATG	3 cut(s)	174, 522, 706
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	137, 351
BseLI	CCNNNNNNNGG	6 cut(s)	397, 496, 497, 575, 642, 668
BseMI	GCAATG	3 cut(s)	174, 522, 706
BseMII	CTCAG	2 cut(s)	60, 708
BseNI	ACTGG	4 cut(s)	304, 317, 647, 656
BseXI	GCAGC	4 cut(s)	133, 388, 494, 547
BseYI	CCCAGC	2 cut(s)	250, 321
BshFI	GGCC	4 cut(s)	240, 282, 548, 687
BshNI	GGYRCC	2 cut(s)	221, 332
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	369, 576
BslI	CCNNNNNNNGG	6 cut(s)	397, 496, 497, 575, 642, 668
BsmAI	GTCTC	1 cut(s)	621
BsnI	GGCC	4 cut(s)	240, 282, 548, 687
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp143I	GATC	4 cut(s)	154, 438, 599, 645
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	4 cut(s)	485, 579, 612, 624
BspANI	GGCC	4 cut(s)	240, 282, 548, 687
BspCNI	CTCAG	2 cut(s)	61, 709
BspMAI	CTGCAG	1 cut(s)	565
BspPI	GGATC	2 cut(s)	149, 653
BspQI	GCTCTTC	1 cut(s)	95
BspT107I	GGYRCC	2 cut(s)	221, 332
BsrDI	GCAATG	3 cut(s)	174, 522, 706
BsrI	ACTGG	4 cut(s)	304, 317, 647, 656
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	4 cut(s)	154, 438, 599, 645
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	397, 469
Bst6I	CTCTTC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	346, 685
BstDEI	CTNAG	3 cut(s)	69, 717, 730
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	137, 351
BstKTI	GATC	4 cut(s)	157, 441, 602, 648
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	4 cut(s)	154, 438, 599, 645
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 65, 341, 482, 524
BstNSI	RCATGY	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	4 cut(s)	133, 388, 494, 547
BstX2I	RGATCY	1 cut(s)	645
BstXI	CCANNNNNNTGG	2 cut(s)	329, 556
BstYI	RGATCY	1 cut(s)	645
BsuRI	GGCC	4 cut(s)	240, 282, 548, 687
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	137, 351
BtsIMutI	CAGTG	3 cut(s)	297, 393, 742
Cac8I	GCNNGC	2 cut(s)	346, 685
Cfr13I	GGNCC	7 cut(s)	48, 238, 487, 546, 566, 608, 659
CviAII	CATG	3 cut(s)	188, 242, 345
DdeI	CTNAG	3 cut(s)	69, 717, 730
DpnI	GATC	4 cut(s)	156, 440, 601, 647
DpnII	GATC	4 cut(s)	154, 438, 599, 645
DraIII	CACNNNGTG	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	187
Eco47I	GGWCC	5 cut(s)	48, 487, 566, 608, 659
EcoO109I	RGGNCCY	2 cut(s)	48, 566
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	191, 245, 348
FaiI	YATR	8 cut(s)	61, 119, 189, 243, 346, 474, 512, 696
FatI	CATG	3 cut(s)	187, 241, 344
FauI	CCCGC	2 cut(s)	572, 619
Fnu4HI	GCNGC	4 cut(s)	147, 402, 483, 561
FokI	GGATG	2 cut(s)	124, 338
Fsp4HI	GCNGC	4 cut(s)	147, 402, 483, 561
GluI	GCNGC	4 cut(s)	147, 402, 483, 561
GsaI	CCCAGC	2 cut(s)	254, 325
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	4 cut(s)	240, 282, 548, 687
HapII	CCGG	2 cut(s)	369, 576
Hin1II	CATG	3 cut(s)	191, 245, 348
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	32, 165
HpaII	CCGG	2 cut(s)	369, 576
HphI	GGTGA	2 cut(s)	358, 625
Hpy166II	GTNNAC	3 cut(s)	135, 247, 463
Hpy188I	TCNGA	2 cut(s)	266, 718
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	3 cut(s)	135, 247, 463
HpyAV	CCTTC	4 cut(s)	15, 416, 490, 580
HpyCH4III	ACNGT	2 cut(s)	397, 469
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	5 cut(s)	101, 209, 344, 476, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 65, 341, 482, 524
HpyF3I	CTNAG	3 cut(s)	69, 717, 730
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	191, 245, 348
Kzo9I	GATC	4 cut(s)	154, 438, 599, 645
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	413, 523
Lsp1109I	GCAGC	4 cut(s)	133, 388, 494, 547
LweI	GCATC	1 cut(s)	312
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	256, 364
MalI	GATC	4 cut(s)	156, 440, 601, 647
MboI	GATC	4 cut(s)	154, 438, 599, 645
MboII	GAAGA	2 cut(s)	82, 298
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	1 cut(s)	723
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	2 cut(s)	381, 513
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	2 cut(s)	391, 637
MnlI	CCTC	4 cut(s)	305, 365, 365, 674
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	2 cut(s)	27, 54
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	3 cut(s)	254, 485, 624
MspI	CCGG	2 cut(s)	369, 576
MwoI	GCNNNNNNNGC	5 cut(s)	11, 65, 341, 482, 524
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	4 cut(s)	154, 438, 599, 645
NlaIII	CATG	3 cut(s)	191, 245, 348
NmuCI	GTSAC	2 cut(s)	256, 364
NspI	RCATGY	1 cut(s)	348
PaeI	GCATGC	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	4 cut(s)	148, 403, 484, 562
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PpuMI	RGGWCCY	2 cut(s)	48, 566
Psp5II	RGGWCCY	2 cut(s)	48, 566
PspFI	CCCAGC	2 cut(s)	250, 321
PspPI	GGNCC	7 cut(s)	48, 238, 487, 546, 566, 608, 659
PspPPI	RGGWCCY	2 cut(s)	48, 566
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	645
PvuII	CAGCTG	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	27, 54
SatI	GCNGC	4 cut(s)	147, 402, 483, 561
Sau3AI	GATC	4 cut(s)	154, 438, 599, 645
Sau96I	GGNCC	7 cut(s)	48, 238, 487, 546, 566, 608, 659
SchI	GAGTC	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	723
SetI	ASST	6 cut(s)	26, 66, 86, 124, 256, 327
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	5 cut(s)	48, 487, 566, 608, 659
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	2 cut(s)	381, 513
SsiI	CCGC	4 cut(s)	485, 579, 612, 624
SspI	AATATT	1 cut(s)	743
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	397, 469
TaiI	ACGT	1 cut(s)	66
TasI	AATT	2 cut(s)	381, 513
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	27, 54
Tru9I	TTAA	2 cut(s)	27, 54
TscAI	CASTG	3 cut(s)	304, 400, 742
TseFI	GTSAC	2 cut(s)	256, 364
TseI	GCWGC	4 cut(s)	146, 401, 482, 560
Tsp45I	GTSAC	2 cut(s)	256, 364
TspDTI	ATGAA	5 cut(s)	64, 340, 526, 602, 697
TspRI	CASTG	3 cut(s)	304, 400, 742
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	5 cut(s)	48, 487, 566, 608, 659
XceI	RCATGY	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.