Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013986

Physical Location & Seq

Genomic Coordinates Reverse (-)

19865896 .. 19868027

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1207400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCCGGAATAGCATTTGGGAGATGTGACGATTCTTTCAGTTTGGGGTCCGTGAAGGCCTACCTTGCTGAGTTCATCTCAACTTTGCTATTTGTTTTTGCAGGAGTTGGTTCAGCCATAGCTTACAACAAGTTGACATCCGATGCTGCACTTGATCCTGCTGGGTTAGTGGCCATTGCCATTGCCCATGGCTTTGCTCTCTTTGTTGCAGTTTCAATTGGGGCCAACATCTCTGGAGGCCATGTAAACCCAGCTGTCACATTCGGATTGGCTCTTGGTGGACAAATCACCATCCTCACTGGCATCTTCTACTGGGCTGCCCAGCTTCTTGGTGCCATTGTTGCAGCCTTTATCCTCAAGTTCGTCACTGGAGGCTTGACAATCCCCACCCACAGTCTAGCTGCCGGAGTTGGAGTCATTGAAGGAGTAGTCTTTGAGATCATCATCACCTTTGCATTGGTTTACACTGTCTATGCAACAGCAGCTGACCCCAAGAAGGGCTCATTGGGCACCATTGCCCCCATCGCCATTGGTTTCATAGTTGGGGCTAACATCTTGGCTGCAGGACCATTCTCCGGTGGATCAATGAACCCGGCCCGCTCTTTTGGTCCTGCCGTTGCTAGCGGTGACTTCCACAACAACTGGATCTACTGGGTTGGACCCCTCGTTGGTGGTGGACTTGCTGGCCTTGTTTATGGAAACCTATTTATGTACAGAGAACATGAACCCTTAGTAAGCGAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009705 GO:0009941 GO:0012505 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042802 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

249

Amino Acids

25.31

Weight (kDa)

5.62

Isoelectric Point (pI)

23.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	16 - 232	7.6e-80	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16240
fragaria_vesca	FvH4_6g31970
malus_domestica	MD09G1207400.v1.1 MD17G1188400.v1.1
prunus_persica	Prupe.3G063500_v2.0.a1
pyrus_communis	pycom17g19710
rosa_chinensis	RchiOBHm_Chr2g0139491
rosa_laevigata	RLG00000019814
rosa_multiflora	Rmu_sc0039402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105400
rosa_rugosa	Rorug02G0358200
rosa_samantha	Rh2AG407600 Rh2BG418300 Rh2CG393600 Rh2DG427000
rosa_wichuraiana	Rw2G033020 Rw2G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	332, 509
AccBSI	CCGCTC	1 cut(s)	600
AciI	CCGC	2 cut(s)	598, 624
AclWI	GGATC	3 cut(s)	149, 589, 653
AcoI	YGGCCR	2 cut(s)	3, 171
AfaI	GTAC	2 cut(s)	713, 743
AfiI	CCNNNNNNNGG	4 cut(s)	496, 497, 575, 668
AgsI	TTSAA	2 cut(s)	216, 422
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	5 cut(s)	122, 254, 325, 401, 485
AluI	AGCT	5 cut(s)	122, 254, 325, 401, 485
AlwI	GGATC	3 cut(s)	149, 589, 653
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	7 cut(s)	3, 57, 171, 222, 238, 594, 685
ApeKI	GCWGC	6 cut(s)	146, 317, 344, 401, 482, 560
AspS9I	GGNCC	6 cut(s)	48, 222, 566, 595, 608, 659
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	3 cut(s)	280, 439, 638
AsuNHI	GCTAGC	1 cut(s)	620
AvaII	GGWCC	4 cut(s)	48, 566, 608, 659
BaeGI	GKGCMC	1 cut(s)	512
BalI	TGGCCA	1 cut(s)	173
BanI	GGYRCC	2 cut(s)	332, 509
BanII	GRGCYC	1 cut(s)	503
BbvI	GCAGC	6 cut(s)	133, 304, 356, 388, 494, 547
BccI	CCATC	2 cut(s)	299, 530
BceAI	ACGGC	1 cut(s)	599
BcnI	CCSGG	1 cut(s)	593
BfaI	CTAG	2 cut(s)	398, 621
BfmI	CTRYAG	1 cut(s)	561
BisI	GCNGC	6 cut(s)	147, 318, 345, 402, 483, 561
BlsI	GCNGC	6 cut(s)	148, 319, 346, 403, 484, 562
BmcAI	AGTACT	1 cut(s)	743
Bme1390I	CCNGG	1 cut(s)	593
Bme18I	GGWCC	4 cut(s)	48, 566, 608, 659
BmgT120I	GGNCC	6 cut(s)	48, 222, 566, 595, 608, 659
BmiI	GGNNCC	5 cut(s)	49, 223, 334, 511, 661
BmrFI	CCNGG	1 cut(s)	593
BmrI	ACTGGG	2 cut(s)	322, 661
BmsI	GCATC	2 cut(s)	133, 312
BmtI	GCTAGC	1 cut(s)	624
BmuI	ACTGGG	2 cut(s)	322, 661
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	2 cut(s)	255, 390
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	593
BsaBI	GATNNNNATC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	575
BsaXI	ACNNNNNCTCC	4 cut(s)	228, 258, 399, 429
Bsc4I	CCNNNNNNNGG	4 cut(s)	496, 497, 575, 668
Bse1I	ACTGG	5 cut(s)	304, 317, 373, 647, 656
Bse3DI	GCAATG	3 cut(s)	174, 180, 513
Bse8I	GATNNNNATC	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	137, 291
BseJI	GATNNNNATC	1 cut(s)	443
BseLI	CCNNNNNNNGG	4 cut(s)	496, 497, 575, 668
BseMI	GCAATG	3 cut(s)	174, 180, 513
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	5 cut(s)	304, 317, 373, 647, 656
BseSI	GKGCMC	1 cut(s)	512
BseXI	GCAGC	6 cut(s)	133, 304, 356, 388, 494, 547
BseYI	CCCAGC	3 cut(s)	161, 250, 321
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	7 cut(s)	5, 59, 173, 224, 240, 596, 687
BshNI	GGYRCC	2 cut(s)	332, 509
BsiSI	CCGG	4 cut(s)	6, 405, 576, 593
BslI	CCNNNNNNNGG	4 cut(s)	496, 497, 575, 668
BsnI	GGCC	7 cut(s)	5, 59, 173, 224, 240, 596, 687
Bsp1286I	GDGCHC	2 cut(s)	503, 512
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	4 cut(s)	154, 438, 581, 645
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	2 cut(s)	598, 624
BspANI	GGCC	7 cut(s)	5, 59, 173, 224, 240, 596, 687
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	5 cut(s)	49, 223, 334, 511, 661
BspMAI	CTGCAG	1 cut(s)	565
BspOI	GCTAGC	1 cut(s)	624
BspPI	GGATC	3 cut(s)	149, 589, 653
BspT107I	GGYRCC	2 cut(s)	332, 509
BsrBI	CCGCTC	1 cut(s)	600
BsrDI	GCAATG	3 cut(s)	174, 180, 513
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	5 cut(s)	304, 317, 373, 647, 656
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	4 cut(s)	154, 438, 581, 645
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	395, 469
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	598, 622, 685
BstDEI	CTNAG	2 cut(s)	69, 730
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	137, 291
BstKTI	GATC	4 cut(s)	157, 441, 584, 648
BstMBI	GATC	4 cut(s)	154, 438, 581, 645
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 65, 341, 482, 507, 524
BstSCI	CCNGG	1 cut(s)	591
BstSFI	CTRYAG	1 cut(s)	561
BstSLI	GKGCMC	1 cut(s)	512
BstV1I	GCAGC	6 cut(s)	133, 304, 356, 388, 494, 547
BstX2I	RGATCY	1 cut(s)	645
BstXI	CCANNNNNNTGG	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	645
BsuRI	GGCC	7 cut(s)	5, 59, 173, 224, 240, 596, 687
BtgI	CCRYGG	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	508
BtsCI	GGATG	2 cut(s)	137, 291
BtsIMutI	CAGTG	3 cut(s)	297, 366, 465
Cac8I	GCNNGC	3 cut(s)	598, 622, 685
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr13I	GGNCC	6 cut(s)	48, 222, 566, 595, 608, 659
Csp6I	GTAC	2 cut(s)	712, 742
CviAII	CATG	3 cut(s)	188, 242, 722
CviQI	GTAC	2 cut(s)	712, 742
DdeI	CTNAG	2 cut(s)	69, 730
DpnI	GATC	4 cut(s)	156, 440, 583, 647
DpnII	GATC	4 cut(s)	154, 438, 581, 645
EaeI	YGGCCR	2 cut(s)	3, 171
Eco130I	CCWWGG	1 cut(s)	187
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	503
Eco47I	GGWCC	4 cut(s)	48, 566, 608, 659
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	191, 245, 725
FaiI	YATR	8 cut(s)	119, 189, 243, 474, 539, 696, 710, 723
FatI	CATG	3 cut(s)	187, 241, 721
FauI	CCCGC	1 cut(s)	605
Fnu4HI	GCNGC	6 cut(s)	147, 318, 345, 402, 483, 561
FokI	GGATG	2 cut(s)	124, 278
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	6 cut(s)	147, 318, 345, 402, 483, 561
FspBI	CTAG	2 cut(s)	398, 621
GluI	GCNGC	6 cut(s)	147, 318, 345, 402, 483, 561
GsaI	CCCAGC	3 cut(s)	165, 254, 325
GsuI	CTGGAG	2 cut(s)	255, 390
HaeIII	GGCC	7 cut(s)	5, 59, 173, 224, 240, 596, 687
HapII	CCGG	4 cut(s)	6, 405, 576, 593
Hin1II	CATG	3 cut(s)	191, 245, 725
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	32, 414
HpaII	CCGG	4 cut(s)	6, 405, 576, 593
HphI	GGTGA	3 cut(s)	280, 439, 638
Hpy166II	GTNNAC	5 cut(s)	135, 247, 281, 463, 677
Hpy188I	TCNGA	2 cut(s)	142, 266
Hpy188III	TCNNGA	1 cut(s)	234
Hpy8I	GTNNAC	5 cut(s)	135, 247, 281, 463, 677
HpyAV	CCTTC	3 cut(s)	49, 416, 490
HpyCH4III	ACNGT	2 cut(s)	395, 469
HpyCH4V	TGCA	7 cut(s)	101, 149, 209, 344, 455, 476, 563
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 65, 341, 482, 507, 524
HpyF3I	CTNAG	2 cut(s)	69, 730
Hsp92II	CATG	3 cut(s)	191, 245, 725
Kzo9I	GATC	4 cut(s)	154, 438, 581, 645
Lsp1109I	GCAGC	6 cut(s)	133, 304, 356, 388, 494, 547
LweI	GCATC	2 cut(s)	133, 312
MaeI	CTAG	2 cut(s)	398, 621
MaeIII	GTNAC	4 cut(s)	26, 256, 364, 626
MalI	GATC	4 cut(s)	156, 440, 583, 647
MbiI	CCGCTC	1 cut(s)	600
MboI	GATC	4 cut(s)	154, 438, 581, 645
MboII	GAAGA	1 cut(s)	298
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	2 cut(s)	503, 512
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	1 cut(s)	216
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	2 cut(s)	391, 637
MnlI	CCTC	5 cut(s)	230, 305, 365, 365, 674
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	2 cut(s)	254, 485
MspI	CCGG	4 cut(s)	6, 405, 576, 593
MspR9I	CCNGG	1 cut(s)	593
MunI	CAATTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	6 cut(s)	11, 65, 341, 482, 507, 524
NciI	CCSGG	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	4 cut(s)	154, 438, 581, 645
NheI	GCTAGC	1 cut(s)	620
NlaIII	CATG	3 cut(s)	191, 245, 725
NlaIV	GGNNCC	5 cut(s)	49, 223, 334, 511, 661
NmuCI	GTSAC	4 cut(s)	26, 256, 364, 626
PceI	AGGCCT	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	6 cut(s)	148, 319, 346, 403, 484, 562
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PspFI	CCCAGC	3 cut(s)	161, 250, 321
PspN4I	GGNNCC	5 cut(s)	49, 223, 334, 511, 661
PspPI	GGNCC	6 cut(s)	48, 222, 566, 595, 608, 659
PstI	CTGCAG	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	645
PvuII	CAGCTG	2 cut(s)	254, 485
RsaI	GTAC	2 cut(s)	713, 743
RsaNI	GTAC	2 cut(s)	712, 742
SatI	GCNGC	6 cut(s)	147, 318, 345, 402, 483, 561
Sau3AI	GATC	4 cut(s)	154, 438, 581, 645
Sau96I	GGNCC	6 cut(s)	48, 222, 566, 595, 608, 659
ScaI	AGTACT	1 cut(s)	743
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	2 cut(s)	503, 512
SetI	ASST	8 cut(s)	66, 124, 256, 327, 403, 452, 487, 705
SfaNI	GCATC	2 cut(s)	133, 312
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	4 cut(s)	48, 566, 608, 659
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	216
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	2 cut(s)	598, 624
SspMI	CTAG	2 cut(s)	398, 621
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	395, 469
TasI	AATT	1 cut(s)	216
TatI	WGTACW	2 cut(s)	711, 741
TfiI	GAWTC	1 cut(s)	32
TscAI	CASTG	3 cut(s)	304, 373, 472
TseFI	GTSAC	4 cut(s)	26, 256, 364, 626
TseI	GCWGC	6 cut(s)	146, 317, 344, 401, 482, 560
Tsp45I	GTSAC	4 cut(s)	26, 256, 364, 626
TspDTI	ATGAA	4 cut(s)	64, 526, 602, 738
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	3 cut(s)	304, 373, 472
VpaK11BI	GGWCC	4 cut(s)	48, 566, 608, 659
XspI	CTAG	2 cut(s)	398, 621
ZrmI	AGTACT	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.