Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013986

Physical Location & Seq

Genomic Coordinates Forward (+)

57067195 .. 57070044

Gene Structure 2850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51003

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGTAATACAAGGAGAAGCTGATCATAATCGATCATCTCATTTACTAATAAACAATATGTTAAATATGTTGTTATTTCTATACTTGCTACTACTATATATACCTGACCTAGATAAGGCATACGTGCTATCTGAACCTTTTTGCATCCTTATCTCTTCTTCTCGTCAATTTCTTCAAGAGTTCCAACAGTTGTTATTCTCCGAGATGGCAAGAATAGCATTTGGAAGGTTTAATGATTCTTTCAGTTTGGGGTCCTTTAAGGCATACGTTGCTGAGTTCATCTCAACCTTGCTCTTCGTTTTTGCAGGAGTTGGTTCAGCCATAGCTTACGACAAGTTGACATCCAACGCTGCTCTTGATCCTGCTGGACTCGTAGCCATTGCCATCTGCCATGGCTTTGCTCTCTTTGTTGCAGTTTCAGTTGGTGCCAACATCTCTGGGGGCCATGTGAACCCAGCTGTCACATTCGGATTGGCTCTTGGTGGCCAAATCACTATCCTCACTGGCATCTTCTACTGGATTGCCCAGCTTCTTGGTGCCATTGTTGCATGCTTCATCCTCAAGTTCGTCACCGGAGGCTTGACAATTCCTATCCACACTGTGGCTGCTGGAGTTGGAGCCATTGAAGGAGTTGTGTTTGAGATCATCATTACTTTTGCTTTGGTTTACACCGTCTATGCAACAGCAGCGGACCCCAAGAAGGGAGACATAGGCATAATTGCTCCCATTGCCATTGGTTTCATTGTTGGGGCCAACATCTTGGCTGCAGGACCCTTCTCCGGCGGGTCAATGAACCCTGCCCGATCATTTGGACCCGCCGTTGTCAGCGGAGACTTCACCGACAACTGGATCTACTGGGTTGGACCCCTCATTGGTGGTGGTCTTGCTGGCCTTATCTATGGCAATGTATTCATTCACTCTGAGCACCAACCCTTAGTCAGTGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009705 GO:0009941 GO:0012505 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042802 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

316

Amino Acids

33.47

Weight (kDa)

5.2

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	83 - 300	4.1e-79	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16240
fragaria_vesca	FvH4_6g31970
malus_domestica	MD09G1207400.v1.1 MD17G1188400.v1.1
prunus_persica	Prupe.3G063500_v2.0.a1
pyrus_communis	pycom17g19710
rosa_chinensis	RchiOBHm_Chr2g0139491
rosa_laevigata	RLG00000019814
rosa_multiflora	Rmu_sc0039402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105400
rosa_rugosa	Rorug02G0358200
rosa_samantha	Rh2AG407600 Rh2BG418300 Rh2CG393600 Rh2DG427000
rosa_wichuraiana	Rw2G033020 Rw2G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	425, 536
AccB7I	CCANNNNNTGG	1 cut(s)	601
AciI	CCGC	4 cut(s)	689, 783, 816, 828
AclWI	GGATC	2 cut(s)	353, 857
AcoI	YGGCCR	1 cut(s)	484
AdeI	CACNNNGTG	1 cut(s)	601
AfiI	CCNNNNNNNGG	7 cut(s)	115, 601, 700, 701, 779, 846, 872
AgsI	TTSAA	2 cut(s)	176, 626
AluBI	AGCT	4 cut(s)	20, 326, 458, 529
AluI	AGCT	4 cut(s)	20, 326, 458, 529
Alw21I	GWGCWC	1 cut(s)	927
Alw26I	GTCTC	2 cut(s)	699, 825
AlwI	GGATC	2 cut(s)	353, 857
AoxI	GGCC	4 cut(s)	442, 484, 750, 889
ApeKI	GCWGC	4 cut(s)	350, 605, 686, 764
AspS9I	GGNCC	7 cut(s)	252, 442, 691, 750, 770, 812, 863
AsuHPI	GGTGA	2 cut(s)	562, 829
AvaII	GGWCC	5 cut(s)	252, 691, 770, 812, 863
BalI	TGGCCA	1 cut(s)	486
BanI	GGYRCC	2 cut(s)	425, 536
Bbv12I	GWGCWC	1 cut(s)	927
BbvI	GCAGC	4 cut(s)	337, 592, 698, 751
BccI	CCATC	2 cut(s)	199, 392
BceAI	ACGGC	1 cut(s)	803
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	699, 825
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	765
BisI	GCNGC	4 cut(s)	351, 606, 687, 765
BlsI	GCNGC	4 cut(s)	352, 607, 688, 766
Bme18I	GGWCC	5 cut(s)	252, 691, 770, 812, 863
BmgT120I	GGNCC	7 cut(s)	252, 442, 691, 750, 770, 812, 863
BmrI	ACTGGG	1 cut(s)	865
BmsI	GCATC	2 cut(s)	153, 516
BmuI	ACTGGG	1 cut(s)	865
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpmI	CTGGAG	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	545
Bsa29I	ATCGAT	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	391
BsaWI	WCCGGW	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	7 cut(s)	115, 601, 700, 701, 779, 846, 872
Bse1I	ACTGG	4 cut(s)	508, 521, 851, 860
Bse3DI	GCAATG	3 cut(s)	378, 726, 910
Bse8I	GATNNNNATC	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	3 cut(s)	144, 341, 555
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	7 cut(s)	115, 601, 700, 701, 779, 846, 872
BseMI	GCAATG	3 cut(s)	378, 726, 910
BseMII	CTCAG	2 cut(s)	264, 912
BseNI	ACTGG	4 cut(s)	508, 521, 851, 860
BseXI	GCAGC	4 cut(s)	337, 592, 698, 751
BseYI	CCCAGC	2 cut(s)	454, 525
BshFI	GGCC	4 cut(s)	444, 486, 752, 891
BshNI	GGYRCC	2 cut(s)	425, 536
BshVI	ATCGAT	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	927
BsiSI	CCGG	2 cut(s)	573, 780
BslI	CCNNNNNNNGG	7 cut(s)	115, 601, 700, 701, 779, 846, 872
BsmAI	GTCTC	2 cut(s)	699, 825
BsnI	GGCC	4 cut(s)	444, 486, 752, 891
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp143I	GATC	6 cut(s)	22, 32, 358, 642, 803, 849
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	4 cut(s)	689, 783, 816, 828
BspANI	GGCC	4 cut(s)	444, 486, 752, 891
BspCNI	CTCAG	2 cut(s)	265, 913
BspDI	ATCGAT	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	2 cut(s)	353, 857
BspQI	GCTCTTC	1 cut(s)	299
BspT107I	GGYRCC	2 cut(s)	425, 536
BsrDI	GCAATG	3 cut(s)	378, 726, 910
BsrI	ACTGG	4 cut(s)	508, 521, 851, 860
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	6 cut(s)	22, 32, 358, 642, 803, 849
BssT1I	CCWWGG	1 cut(s)	391
Bst4CI	ACNGT	3 cut(s)	189, 601, 673
Bst6I	CTCTTC	2 cut(s)	160, 299
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	550, 889
BstDEI	CTNAG	3 cut(s)	273, 921, 934
BstDSI	CCRYGG	1 cut(s)	391
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	3 cut(s)	144, 341, 555
BstKTI	GATC	6 cut(s)	25, 35, 361, 645, 806, 852
BstMAI	GTCTC	2 cut(s)	699, 825
BstMBI	GATC	6 cut(s)	22, 32, 358, 642, 803, 849
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 269, 545, 686, 728
BstNSI	RCATGY	1 cut(s)	552
BstSFI	CTRYAG	1 cut(s)	765
BstV1I	GCAGC	4 cut(s)	337, 592, 698, 751
BstX2I	RGATCY	1 cut(s)	849
BstXI	CCANNNNNNTGG	2 cut(s)	533, 760
BstYI	RGATCY	1 cut(s)	849
Bsu15I	ATCGAT	1 cut(s)	31
BsuRI	GGCC	4 cut(s)	444, 486, 752, 891
BsuTUI	ATCGAT	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	144, 341, 555
BtsIMutI	CAGTG	3 cut(s)	501, 597, 946
Cac8I	GCNNGC	2 cut(s)	550, 889
Cfr13I	GGNCC	7 cut(s)	252, 442, 691, 750, 770, 812, 863
ClaI	ATCGAT	1 cut(s)	31
CviAII	CATG	3 cut(s)	392, 446, 549
DdeI	CTNAG	3 cut(s)	273, 921, 934
DpnI	GATC	6 cut(s)	24, 34, 360, 644, 805, 851
DpnII	GATC	6 cut(s)	22, 32, 358, 642, 803, 849
DraIII	CACNNNGTG	1 cut(s)	601
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	160, 299
EarI	CTCTTC	2 cut(s)	160, 299
Eco130I	CCWWGG	1 cut(s)	391
Eco47I	GGWCC	5 cut(s)	252, 691, 770, 812, 863
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO109I	RGGNCCY	2 cut(s)	252, 770
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	3 cut(s)	395, 449, 552
FatI	CATG	3 cut(s)	391, 445, 548
FauI	CCCGC	2 cut(s)	776, 823
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	4 cut(s)	351, 606, 687, 765
FokI	GGATG	3 cut(s)	131, 328, 542
Fsp4HI	GCNGC	4 cut(s)	351, 606, 687, 765
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	4 cut(s)	351, 606, 687, 765
GsaI	CCCAGC	2 cut(s)	458, 529
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	4 cut(s)	444, 486, 752, 891
HapII	CCGG	2 cut(s)	573, 780
Hin1II	CATG	3 cut(s)	395, 449, 552
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	2 cut(s)	236, 369
HpaII	CCGG	2 cut(s)	573, 780
HphI	GGTGA	2 cut(s)	562, 829
Hpy166II	GTNNAC	3 cut(s)	339, 451, 667
Hpy188I	TCNGA	4 cut(s)	133, 202, 470, 922
Hpy188III	TCNNGA	2 cut(s)	176, 356
Hpy8I	GTNNAC	3 cut(s)	339, 451, 667
HpyAV	CCTTC	4 cut(s)	219, 620, 694, 784
HpyCH4III	ACNGT	3 cut(s)	189, 601, 673
HpyCH4IV	ACGT	2 cut(s)	123, 267
HpyCH4V	TGCA	6 cut(s)	144, 305, 413, 548, 680, 767
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 269, 545, 686, 728
HpyF3I	CTNAG	3 cut(s)	273, 921, 934
HpySE526I	ACGT	2 cut(s)	123, 267
Hsp92II	CATG	3 cut(s)	395, 449, 552
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	6 cut(s)	22, 32, 358, 642, 803, 849
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	2 cut(s)	617, 727
Lsp1109I	GCAGC	4 cut(s)	337, 592, 698, 751
LweI	GCATC	2 cut(s)	153, 516
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	123, 267
MaeIII	GTNAC	2 cut(s)	460, 568
MalI	GATC	6 cut(s)	24, 34, 360, 644, 805, 851
MboI	GATC	6 cut(s)	22, 32, 358, 642, 803, 849
MboII	GAAGA	5 cut(s)	147, 150, 164, 286, 502
MflI	RGATCY	1 cut(s)	849
MhlI	GDGCHC	1 cut(s)	927
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	3 cut(s)	167, 585, 717
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	4 cut(s)	208, 369, 595, 841
MnlI	CCTC	4 cut(s)	509, 569, 569, 878
Mox20I	TGGCCA	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	3 cut(s)	62, 231, 258
Msp20I	TGGCCA	1 cut(s)	486
MspA1I	CMGCKG	3 cut(s)	458, 689, 828
MspI	CCGG	2 cut(s)	573, 780
MwoI	GCNNNNNNNGC	5 cut(s)	215, 269, 545, 686, 728
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	6 cut(s)	22, 32, 358, 642, 803, 849
NlaIII	CATG	3 cut(s)	395, 449, 552
NmuCI	GTSAC	2 cut(s)	460, 568
NspI	RCATGY	1 cut(s)	552
PaeI	GCATGC	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	601
PkrI	GCNGC	4 cut(s)	352, 607, 688, 766
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
Ppu21I	YACGTR	1 cut(s)	124
PpuMI	RGGWCCY	2 cut(s)	252, 770
Psp5II	RGGWCCY	2 cut(s)	252, 770
PspFI	CCCAGC	2 cut(s)	454, 525
PspPI	GGNCC	7 cut(s)	252, 442, 691, 750, 770, 812, 863
PspPPI	RGGWCCY	2 cut(s)	252, 770
PstI	CTGCAG	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	849
PvuII	CAGCTG	1 cut(s)	458
SapI	GCTCTTC	1 cut(s)	299
SaqAI	TTAA	3 cut(s)	62, 231, 258
SatI	GCNGC	4 cut(s)	351, 606, 687, 765
Sau3AI	GATC	6 cut(s)	22, 32, 358, 642, 803, 849
Sau96I	GGNCC	7 cut(s)	252, 442, 691, 750, 770, 812, 863
SchI	GAGTC	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	2 cut(s)	153, 516
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	5 cut(s)	252, 691, 770, 812, 863
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SphI	GCATGC	1 cut(s)	552
Sse9I	AATT	3 cut(s)	167, 585, 717
SsiI	CCGC	4 cut(s)	689, 783, 816, 828
SspI	AATATT	1 cut(s)	947
SspMI	CTAG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	3 cut(s)	189, 601, 673
TaiI	ACGT	2 cut(s)	126, 270
TaqI	TCGA	1 cut(s)	31
TasI	AATT	3 cut(s)	167, 585, 717
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	3 cut(s)	62, 231, 258
Tru9I	TTAA	3 cut(s)	62, 231, 258
TscAI	CASTG	3 cut(s)	508, 604, 946
TseFI	GTSAC	2 cut(s)	460, 568
TseI	GCWGC	4 cut(s)	350, 605, 686, 764
Tsp45I	GTSAC	2 cut(s)	460, 568
TspDTI	ATGAA	5 cut(s)	268, 544, 730, 806, 901
TspRI	CASTG	3 cut(s)	508, 604, 946
Van91I	CCANNNNNTGG	1 cut(s)	601
VpaK11BI	GGWCC	5 cut(s)	252, 691, 770, 812, 863
XagI	CCTNNNNNAGG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	552
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.