Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013986

Physical Location & Seq

Genomic Coordinates Reverse (-)

17630631 .. 17633023

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAAAGCTTTTGTTATTTCTCAACTGATTCAATACAATTCTCACACACACAAAGTACATGTTTATATAGCTTGCAGATATGCCTTATCACCATATACCTTCAACATTCACTTACAACACATTTTTGTCATTTTAATTAAAACTCAAAATTTTCAAAACATTTTCATCAGTTTTTCTTTTATTGTATCTAAACACATAAATATTTGCCACCCTTCTTTCTACAACCTTATCTTCTTCTCCTCCGTATTCTTCAATAGTAGTAAGTGTTCCAATTTCCAAAAGATGGCCGGAATAGCATTTGGGAGATTTGATGATTCTTTCAGTTTGGGGTCCTTGAAGGCCTACCTTGCTGAGTTCATCTCCACTTTGCTCTTTGTTTTTGCAGGAGTTGGTTCAGCCATAGCTTACAACAAGTTGACATCCGATGCTGCACTTGATCCTGCTGGGCTAGTGGCCGTTGCCATAGCCCATGGCTTTGCTCTCTTTGTTGCAGTCTCAATTGGGGCCAACATCTCTGGAGGCCATGTAAACCCAGCCGTCACTTTCGGATTGGCTCTTGGTGGCCAAATCACCATCCTCACTGGCATCTTCTACTGGATTGCCCAGCTTGTTGGCGCCATTGTTGCAGCCTTTATCCTCAAGTTCGTCACTGGAGGCTTGACAATCCCCATCCACAGTCTAGCTGCTGGAGTTGGAGCCATTGAAGGAGTAGTCTTTGAGATCATCATCACCTTTGCTTTGGTTTACACTGTCTATGCAACAGCAGCTGACCCCAAGAAGGGCTCGTTGGGCACCATTGCCCCCATCGCCATCGGTTTCATTGTCGGGGCTAACATCTTGGCTGCCGGACCATTCTCCGGTGGGTCAATGAACCCGGCCCGGTCTTTCGGTCCTGCCGTTGCTAGCGGCGACTTCCACGACAACTGGATCTACTGGGTTGGACCCCTCATTGGTGGTGGACTTGCTGGCCTTATCTATGGAAACGTATTTATACACTCAGAACATGCACCCTTAGTCAGCGAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009705 GO:0009941 GO:0012505 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042802 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

343

Amino Acids

36.33

Weight (kDa)

8.36

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	109 - 326	3.5e-80	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16240
fragaria_vesca	FvH4_6g31970
malus_domestica	MD09G1207400.v1.1 MD17G1188400.v1.1
prunus_persica	Prupe.3G063500_v2.0.a1
pyrus_communis	pycom17g19710
rosa_chinensis	RchiOBHm_Chr2g0139491
rosa_laevigata	RLG00000019814
rosa_multiflora	Rmu_sc0039402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105400
rosa_rugosa	Rorug02G0358200
rosa_samantha	Rh2AG407600 Rh2BG418300 Rh2CG393600 Rh2DG427000
rosa_wichuraiana	Rw2G033020 Rw2G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	614, 791
AccB7I	CCANNNNNTGG	1 cut(s)	283
AciI	CCGC	1 cut(s)	906
AclWI	GGATC	2 cut(s)	431, 935
AcoI	YGGCCR	3 cut(s)	285, 453, 562
AcsI	RAATTY	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	615
AfaI	GTAC	2 cut(s)	57, 1025
AfiI	CCNNNNNNNGG	5 cut(s)	283, 778, 779, 857, 950
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	6 cut(s)	32, 103, 155, 253, 337, 704
AjuI	GAANNNNNNNTTGG	2 cut(s)	770, 802
AluBI	AGCT	6 cut(s)	8, 71, 404, 607, 683, 767
AluI	AGCT	6 cut(s)	8, 71, 404, 607, 683, 767
Alw26I	GTCTC	1 cut(s)	499
AlwI	GGATC	2 cut(s)	431, 935
AlwNI	CAGNNNCTG	1 cut(s)	767
AoxI	GGCC	8 cut(s)	285, 339, 453, 504, 520, 562, 876, 967
ApeKI	GCWGC	5 cut(s)	428, 626, 683, 764, 842
ApoI	RAATTY	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	6 cut(s)	330, 504, 848, 877, 890, 941
AsuC2I	CCSGG	2 cut(s)	875, 880
AsuHPI	GGTGA	3 cut(s)	81, 562, 721
AsuNHI	GCTAGC	1 cut(s)	902
AvaII	GGWCC	4 cut(s)	330, 848, 890, 941
BaeGI	GKGCMC	1 cut(s)	794
BalI	TGGCCA	1 cut(s)	564
BanI	GGYRCC	2 cut(s)	614, 791
BanII	GRGCYC	1 cut(s)	785
BbvI	GCAGC	5 cut(s)	415, 638, 670, 776, 829
BccI	CCATC	5 cut(s)	277, 581, 677, 812, 818
BceAI	ACGGC	3 cut(s)	440, 521, 881
BcnI	CCSGG	2 cut(s)	875, 880
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	3 cut(s)	449, 680, 903
BfoI	RGCGCY	1 cut(s)	618
BisI	GCNGC	6 cut(s)	429, 627, 684, 765, 843, 907
BlsI	GCNGC	6 cut(s)	430, 628, 685, 766, 844, 908
BmcAI	AGTACT	1 cut(s)	1025
Bme1390I	CCNGG	2 cut(s)	875, 880
Bme18I	GGWCC	4 cut(s)	330, 848, 890, 941
BmgT120I	GGNCC	6 cut(s)	330, 504, 848, 877, 890, 941
BmiI	GGNNCC	6 cut(s)	331, 505, 616, 697, 793, 943
BmrFI	CCNGG	2 cut(s)	875, 880
BmrI	ACTGGG	1 cut(s)	943
BmsI	GCATC	2 cut(s)	415, 594
BmtI	GCTAGC	1 cut(s)	906
BmuI	ACTGGG	1 cut(s)	943
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	3 cut(s)	537, 672, 708
BpuEI	CTTGAG	1 cut(s)	623
BpuMI	CCSGG	2 cut(s)	875, 880
BsaBI	GATNNNNATC	1 cut(s)	725
BsaHI	GRCGYC	1 cut(s)	615
BsaJI	CCNNGG	1 cut(s)	469
BsaWI	WCCGGW	1 cut(s)	857
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	5 cut(s)	283, 778, 779, 857, 950
Bse1I	ACTGG	5 cut(s)	586, 599, 655, 929, 938
Bse3DI	GCAATG	1 cut(s)	795
Bse8I	GATNNNNATC	1 cut(s)	725
BseDI	CCNNGG	1 cut(s)	469
BseGI	GGATG	3 cut(s)	419, 573, 669
BseJI	GATNNNNATC	1 cut(s)	725
BseLI	CCNNNNNNNGG	5 cut(s)	283, 778, 779, 857, 950
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	2 cut(s)	342, 1011
BseNI	ACTGG	5 cut(s)	586, 599, 655, 929, 938
BseRI	GAGGAG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	794
BseXI	GCAGC	5 cut(s)	415, 638, 670, 776, 829
BseYI	CCCAGC	3 cut(s)	443, 532, 603
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	8 cut(s)	287, 341, 455, 506, 522, 564, 878, 969
BshNI	GGYRCC	2 cut(s)	614, 791
BsiSI	CCGG	5 cut(s)	288, 846, 858, 875, 880
BslI	CCNNNNNNNGG	5 cut(s)	283, 778, 779, 857, 950
BsmAI	GTCTC	1 cut(s)	499
BsnI	GGCC	8 cut(s)	287, 341, 455, 506, 522, 564, 878, 969
Bsp1286I	GDGCHC	2 cut(s)	785, 794
Bsp143I	GATC	3 cut(s)	436, 720, 927
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	1 cut(s)	906
BspANI	GGCC	8 cut(s)	287, 341, 455, 506, 522, 564, 878, 969
BspCNI	CTCAG	2 cut(s)	343, 1010
BspLI	GGNNCC	6 cut(s)	331, 505, 616, 697, 793, 943
BspOI	GCTAGC	1 cut(s)	906
BspPI	GGATC	2 cut(s)	431, 935
BspT107I	GGYRCC	2 cut(s)	614, 791
BsrDI	GCAATG	1 cut(s)	795
BsrI	ACTGG	5 cut(s)	586, 599, 655, 929, 938
BssECI	CCNNGG	1 cut(s)	469
BssMI	GATC	3 cut(s)	436, 720, 927
BssNI	GRCGYC	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	469
Bst4CI	ACNGT	2 cut(s)	677, 751
BstACI	GRCGYC	1 cut(s)	615
BstC8I	GCNNGC	3 cut(s)	73, 904, 967
BstDEI	CTNAG	3 cut(s)	351, 997, 1012
BstDSI	CCRYGG	1 cut(s)	469
BstF5I	GGATG	3 cut(s)	419, 573, 669
BstH2I	RGCGCY	1 cut(s)	618
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	3 cut(s)	439, 723, 930
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	3 cut(s)	436, 720, 927
BstMWI	GCNNNNNNNGC	6 cut(s)	293, 347, 623, 764, 789, 806
BstNSI	RCATGY	2 cut(s)	62, 1007
BstSCI	CCNGG	2 cut(s)	873, 878
BstSLI	GKGCMC	1 cut(s)	794
BstV1I	GCAGC	5 cut(s)	415, 638, 670, 776, 829
BstX2I	RGATCY	1 cut(s)	927
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	927
BsuRI	GGCC	8 cut(s)	287, 341, 455, 506, 522, 564, 878, 969
BtgI	CCRYGG	1 cut(s)	469
BtgZI	GCGATG	1 cut(s)	790
BtsCI	GGATG	3 cut(s)	419, 573, 669
BtsIMutI	CAGTG	3 cut(s)	579, 648, 747
Cac8I	GCNNGC	3 cut(s)	73, 904, 967
CaiI	CAGNNNCTG	1 cut(s)	767
CfoI	GCGC	1 cut(s)	617
Cfr13I	GGNCC	6 cut(s)	330, 504, 848, 877, 890, 941
Csp6I	GTAC	2 cut(s)	56, 1024
CviAII	CATG	4 cut(s)	59, 470, 524, 1004
CviQI	GTAC	2 cut(s)	56, 1024
DdeI	CTNAG	3 cut(s)	351, 997, 1012
DinI	GGCGCC	1 cut(s)	616
DpnI	GATC	3 cut(s)	438, 722, 929
DpnII	GATC	3 cut(s)	436, 720, 927
EaeI	YGGCCR	3 cut(s)	285, 453, 562
Eco130I	CCWWGG	1 cut(s)	469
Eco147I	AGGCCT	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	785
Eco47I	GGWCC	4 cut(s)	330, 848, 890, 941
EcoO109I	RGGNCCY	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	785
EgeI	GGCGCC	1 cut(s)	616
EheI	GGCGCC	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	4 cut(s)	62, 473, 527, 1007
FatI	CATG	4 cut(s)	58, 469, 523, 1003
Fnu4HI	GCNGC	6 cut(s)	429, 627, 684, 765, 843, 907
FokI	GGATG	3 cut(s)	406, 560, 656
FriOI	GRGCYC	1 cut(s)	785
Fsp4HI	GCNGC	6 cut(s)	429, 627, 684, 765, 843, 907
FspBI	CTAG	3 cut(s)	449, 680, 903
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	6 cut(s)	429, 627, 684, 765, 843, 907
GsaI	CCCAGC	3 cut(s)	447, 536, 607
GsuI	CTGGAG	3 cut(s)	537, 672, 708
HaeII	RGCGCY	1 cut(s)	618
HaeIII	GGCC	8 cut(s)	287, 341, 455, 506, 522, 564, 878, 969
HapII	CCGG	5 cut(s)	288, 846, 858, 875, 880
HhaI	GCGC	1 cut(s)	617
Hin1I	GRCGYC	1 cut(s)	615
Hin1II	CATG	4 cut(s)	62, 473, 527, 1007
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	2 cut(s)	28, 314
HpaII	CCGG	5 cut(s)	288, 846, 858, 875, 880
HphI	GGTGA	3 cut(s)	81, 562, 721
Hpy166II	GTNNAC	4 cut(s)	417, 529, 745, 959
Hpy188I	TCNGA	3 cut(s)	424, 548, 1000
Hpy188III	TCNNGA	1 cut(s)	516
Hpy8I	GTNNAC	4 cut(s)	417, 529, 745, 959
HpyAV	CCTTC	5 cut(s)	109, 222, 331, 698, 772
HpyCH4III	ACNGT	2 cut(s)	677, 751
HpyCH4IV	ACGT	1 cut(s)	984
HpyCH4V	TGCA	7 cut(s)	75, 383, 431, 491, 626, 758, 1007
HpyF10VI	GCNNNNNNNGC	6 cut(s)	293, 347, 623, 764, 789, 806
HpyF3I	CTNAG	3 cut(s)	351, 997, 1012
HpySE526I	ACGT	1 cut(s)	984
Hsp92I	GRCGYC	1 cut(s)	615
Hsp92II	CATG	4 cut(s)	62, 473, 527, 1007
HspAI	GCGC	1 cut(s)	615
KasI	GGCGCC	1 cut(s)	614
Kzo9I	GATC	3 cut(s)	436, 720, 927
LmnI	GCTCC	1 cut(s)	695
Lsp1109I	GCAGC	5 cut(s)	415, 638, 670, 776, 829
LweI	GCATC	2 cut(s)	415, 594
MaeI	CTAG	3 cut(s)	449, 680, 903
MaeII	ACGT	1 cut(s)	984
MaeIII	GTNAC	2 cut(s)	538, 646
MalI	GATC	3 cut(s)	438, 722, 929
MboI	GATC	3 cut(s)	436, 720, 927
MboII	GAAGA	4 cut(s)	223, 226, 241, 580
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	927
MhlI	GDGCHC	2 cut(s)	785, 794
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	5 cut(s)	37, 135, 148, 271, 498
MluNI	TGGCCA	1 cut(s)	564
Mly113I	GGCGCC	1 cut(s)	615
MmeI	TCCRAC	2 cut(s)	673, 919
MnlI	CCTC	6 cut(s)	250, 512, 587, 647, 647, 956
Mox20I	TGGCCA	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	2 cut(s)	134, 138
Msp20I	TGGCCA	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	5 cut(s)	288, 846, 858, 875, 880
MspR9I	CCNGG	2 cut(s)	875, 880
MunI	CAATTG	1 cut(s)	498
MwoI	GCNNNNNNNGC	6 cut(s)	293, 347, 623, 764, 789, 806
NarI	GGCGCC	1 cut(s)	615
NciI	CCSGG	2 cut(s)	875, 880
NcoI	CCATGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	436, 720, 927
NheI	GCTAGC	1 cut(s)	902
NlaIII	CATG	4 cut(s)	62, 473, 527, 1007
NlaIV	GGNNCC	6 cut(s)	331, 505, 616, 697, 793, 943
NmuCI	GTSAC	2 cut(s)	538, 646
NspI	RCATGY	2 cut(s)	62, 1007
PacI	TTAATTAA	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	341
PciI	ACATGT	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	1 cut(s)	894
PfeI	GAWTC	2 cut(s)	28, 314
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	6 cut(s)	430, 628, 685, 766, 844, 908
PluTI	GGCGCC	1 cut(s)	618
PpuMI	RGGWCCY	1 cut(s)	330
PscI	ACATGT	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	330
PspFI	CCCAGC	3 cut(s)	443, 532, 603
PspN4I	GGNNCC	6 cut(s)	331, 505, 616, 697, 793, 943
PspPI	GGNCC	6 cut(s)	330, 504, 848, 877, 890, 941
PspPPI	RGGWCCY	1 cut(s)	330
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	1 cut(s)	927
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	2 cut(s)	57, 1025
RsaNI	GTAC	2 cut(s)	56, 1024
SaqAI	TTAA	2 cut(s)	134, 138
SatI	GCNGC	6 cut(s)	429, 627, 684, 765, 843, 907
Sau3AI	GATC	3 cut(s)	436, 720, 927
Sau96I	GGNCC	6 cut(s)	330, 504, 848, 877, 890, 941
ScaI	AGTACT	1 cut(s)	1025
ScrFI	CCNGG	2 cut(s)	875, 880
SduI	GDGCHC	2 cut(s)	785, 794
SfaNI	GCATC	2 cut(s)	415, 594
SfoI	GGCGCC	1 cut(s)	616
SinI	GGWCC	4 cut(s)	330, 848, 890, 941
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	5 cut(s)	37, 135, 148, 271, 498
SseBI	AGGCCT	1 cut(s)	341
SsiI	CCGC	1 cut(s)	906
SspDI	GGCGCC	1 cut(s)	614
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	3 cut(s)	449, 680, 903
StuI	AGGCCT	1 cut(s)	341
StyD4I	CCNGG	2 cut(s)	873, 878
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	2 cut(s)	677, 751
TaiI	ACGT	1 cut(s)	987
TaqII	GACCGA	1 cut(s)	878
TasI	AATT	5 cut(s)	37, 135, 148, 271, 498
TatI	WGTACW	2 cut(s)	55, 1023
TauI	GCSGC	1 cut(s)	909
TfiI	GAWTC	2 cut(s)	28, 314
Tru1I	TTAA	2 cut(s)	134, 138
Tru9I	TTAA	2 cut(s)	134, 138
TscAI	CASTG	3 cut(s)	586, 655, 754
TseFI	GTSAC	2 cut(s)	538, 646
TseI	GCWGC	5 cut(s)	428, 626, 683, 764, 842
Tsp45I	GTSAC	2 cut(s)	538, 646
TspDTI	ATGAA	5 cut(s)	17, 154, 346, 808, 884
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	3 cut(s)	586, 655, 754
Van91I	CCANNNNNTGG	1 cut(s)	283
VpaK11BI	GGWCC	4 cut(s)	330, 848, 890, 941
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	2 cut(s)	62, 1007
XspI	CTAG	3 cut(s)	449, 680, 903
ZrmI	AGTACT	1 cut(s)	1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.