Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013986

Physical Location & Seq

Genomic Coordinates Forward (+)

4547754 .. 4549678

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G063500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCCAAAATAGCATTTGGGCGCTTTGATGATTCTTTCAGTTTGGGTTCCCTTAAGGCCTATCTTGCAGAGTTCATCTCAACCTTGCTCTTTGTTTTTGCAGGAGTTGGTTCAGCCATTGCTTACAACAAGTTGACATCCAATGCTGCTCTTGATCCTGCTGGGCTAGTAGCCATTGCTATTGCCCATGGCTTTGCTCTCTTTGTTGCAGTCGCAATTGGCGCCAACATCTCTGGTGGACATGTGAACCCAGCGGTCACCTTTGGATTGGCTCTTGGTGGCCAAATCACTGTCCTCACTGGCATCTTCTACTGGATTGCGCAGCTTCTTGGTGCCATTGTTGCTGCCTTCATCCTCAAGTTCGTCACCGGAGGCTTGACAATTCCAATCCACAGTTTGGCTGCCGGAGTTGGAGCCATTCAAGGAGTAATCTTTGAGATCATCATCACCTTTGCTTTGGTTTACACTGTGTATGCAACAGCAGCTGACCCCAAGAAGGGCGCATTGGGCACCATTGCCCCCATGGCCATTGGTTTCATTGTTGGGGCTAACATCTTGGCTGCCGGCCCATTCTCCGGCGGATCAATGAACCCAGCTCGCTCTTTCGGGCCTGCCGTTGCTAGCGGCGACTTCCACGACAACTGGATCTACTGGGTTGGGCCCCTCATTGGTGGTGGGCTTGCTGGGCTTATCTATGGCAATGTTTTTTTTCACACAGAGCATGCACCCTTAGTCAACGAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005275 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006833 GO:0008150 GO:0008324 GO:0008519 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009705 GO:0009941 GO:0012505 GO:0015075 GO:0015101 GO:0015200 GO:0015250 GO:0015267 GO:0015318 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042802 GO:0042807 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0072489 GO:0098588 GO:0098655 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

249

Amino Acids

25.37

Weight (kDa)

6.26

Isoelectric Point (pI)

20.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16240
fragaria_vesca	FvH4_6g31970
malus_domestica	MD09G1207400.v1.1 MD17G1188400.v1.1
prunus_persica	Prupe.3G063500_v2.0.a1
pyrus_communis	pycom17g19710
rosa_chinensis	RchiOBHm_Chr2g0139491
rosa_laevigata	RLG00000019814
rosa_multiflora	Rmu_sc0039402.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105400
rosa_rugosa	Rorug02G0358200
rosa_samantha	Rh2AG407600 Rh2BG418300 Rh2CG393600 Rh2DG427000
rosa_wichuraiana	Rw2G033020 Rw2G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	321
AccB1I	GGYRCC	3 cut(s)	221, 332, 509
AccB7I	CCANNNNNTGG	1 cut(s)	397
AciI	CCGC	3 cut(s)	254, 579, 624
AclWI	GGATC	3 cut(s)	149, 589, 653
AcoI	YGGCCR	3 cut(s)	3, 280, 525
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	5 cut(s)	397, 496, 497, 575, 668
AflII	CTTAAG	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	422
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	3 cut(s)	325, 485, 596
AluI	AGCT	3 cut(s)	325, 485, 596
AlwI	GGATC	3 cut(s)	149, 589, 653
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	7 cut(s)	3, 57, 280, 525, 565, 608, 659
ApaI	GGGCCC	1 cut(s)	663
ApeKI	GCWGC	6 cut(s)	146, 322, 344, 401, 482, 560
AspLEI	GCGC	4 cut(s)	24, 224, 322, 503
AspS9I	GGNCC	4 cut(s)	566, 608, 659, 660
AsuHPI	GGTGA	3 cut(s)	250, 358, 439
AsuNHI	GCTAGC	1 cut(s)	620
BaeGI	GKGCMC	2 cut(s)	512, 663
BalI	TGGCCA	3 cut(s)	5, 282, 527
BanI	GGYRCC	3 cut(s)	221, 332, 509
BanII	GRGCYC	1 cut(s)	663
BbvI	GCAGC	6 cut(s)	133, 331, 334, 388, 494, 547
BceAI	ACGGC	1 cut(s)	599
BfaI	CTAG	2 cut(s)	167, 621
BfoI	RGCGCY	2 cut(s)	25, 225
BfrI	CTTAAG	1 cut(s)	53
BglI	GCCNNNNNGGC	1 cut(s)	524
BisI	GCNGC	7 cut(s)	147, 323, 345, 402, 483, 561, 625
BlsI	GCNGC	7 cut(s)	148, 324, 346, 403, 484, 562, 626
BmgT120I	GGNCC	4 cut(s)	566, 608, 659, 660
BmiI	GGNNCC	7 cut(s)	49, 223, 334, 415, 511, 661, 662
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	1 cut(s)	312
BmtI	GCTAGC	1 cut(s)	624
BmuI	ACTGGG	1 cut(s)	661
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpuEI	CTTGAG	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	187, 522
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	5 cut(s)	397, 496, 497, 575, 668
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	4 cut(s)	304, 317, 647, 656
Bse3DI	GCAATG	4 cut(s)	117, 174, 513, 706
Bse8I	GATNNNNATC	1 cut(s)	443
BseDI	CCNNGG	2 cut(s)	187, 522
BseGI	GGATG	2 cut(s)	137, 351
BseJI	GATNNNNATC	1 cut(s)	443
BseLI	CCNNNNNNNGG	5 cut(s)	397, 496, 497, 575, 668
BseMI	GCAATG	4 cut(s)	117, 174, 513, 706
BseNI	ACTGG	4 cut(s)	304, 317, 647, 656
BseSI	GKGCMC	2 cut(s)	512, 663
BseXI	GCAGC	6 cut(s)	133, 331, 334, 388, 494, 547
BseYI	CCCAGC	4 cut(s)	161, 250, 592, 683
BshFI	GGCC	7 cut(s)	5, 59, 282, 527, 567, 610, 661
BshNI	GGYRCC	3 cut(s)	221, 332, 509
BsiSI	CCGG	4 cut(s)	369, 405, 564, 576
BslI	CCNNNNNNNGG	5 cut(s)	397, 496, 497, 575, 668
BsnI	GGCC	7 cut(s)	5, 59, 282, 527, 567, 610, 661
Bsp120I	GGGCCC	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	512, 663
Bsp143I	GATC	4 cut(s)	154, 438, 581, 645
Bsp19I	CCATGG	2 cut(s)	187, 522
BspACI	CCGC	3 cut(s)	254, 579, 624
BspANI	GGCC	7 cut(s)	5, 59, 282, 527, 567, 610, 661
BspLI	GGNNCC	7 cut(s)	49, 223, 334, 415, 511, 661, 662
BspOI	GCTAGC	1 cut(s)	624
BspPI	GGATC	3 cut(s)	149, 589, 653
BspT107I	GGYRCC	3 cut(s)	221, 332, 509
BspTI	CTTAAG	1 cut(s)	53
BsrDI	GCAATG	4 cut(s)	117, 174, 513, 706
BsrFI	RCCGGY	1 cut(s)	563
BsrI	ACTGG	4 cut(s)	304, 317, 647, 656
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	2 cut(s)	187, 522
BssMI	GATC	4 cut(s)	154, 438, 581, 645
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	187, 522
Bst4CI	ACNGT	3 cut(s)	292, 395, 469
BstACI	GRCGYC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	53
BstC8I	GCNNGC	6 cut(s)	565, 598, 612, 622, 681, 723
BstDEI	CTNAG	1 cut(s)	730
BstDSI	CCRYGG	2 cut(s)	187, 522
BstEII	GGTNACC	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	137, 351
BstH2I	RGCGCY	2 cut(s)	25, 225
BstHHI	GCGC	4 cut(s)	24, 224, 322, 503
BstKTI	GATC	4 cut(s)	157, 441, 584, 648
BstMBI	GATC	4 cut(s)	154, 438, 581, 645
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 65, 221, 341, 482, 507, 524, 685
BstNSI	RCATGY	2 cut(s)	245, 725
BstPI	GGTNACC	1 cut(s)	256
BstSLI	GKGCMC	2 cut(s)	512, 663
BstV1I	GCAGC	6 cut(s)	133, 331, 334, 388, 494, 547
BstX2I	RGATCY	1 cut(s)	645
BstYI	RGATCY	1 cut(s)	645
BsuRI	GGCC	7 cut(s)	5, 59, 282, 527, 567, 610, 661
BtgI	CCRYGG	2 cut(s)	187, 522
BtsCI	GGATG	2 cut(s)	137, 351
BtsIMutI	CAGTG	3 cut(s)	288, 297, 465
Cac8I	GCNNGC	6 cut(s)	565, 598, 612, 622, 681, 723
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	4 cut(s)	24, 224, 322, 503
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	4 cut(s)	566, 608, 659, 660
CviAII	CATG	4 cut(s)	188, 242, 523, 722
DdeI	CTNAG	1 cut(s)	730
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	4 cut(s)	156, 440, 583, 647
DpnII	GATC	4 cut(s)	154, 438, 581, 645
EaeI	YGGCCR	3 cut(s)	3, 280, 525
EciI	GGCGGA	1 cut(s)	594
Eco130I	CCWWGG	2 cut(s)	187, 522
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	663
Eco91I	GGTNACC	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	660
EcoO65I	GGTNACC	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	187, 522
EcoT38I	GRGCYC	1 cut(s)	663
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	187, 522
FaeI	CATG	4 cut(s)	191, 245, 526, 725
FaiI	YATR	6 cut(s)	189, 243, 474, 524, 696, 723
FatI	CATG	4 cut(s)	187, 241, 522, 721
Fnu4HI	GCNGC	7 cut(s)	147, 323, 345, 402, 483, 561, 625
FokI	GGATG	2 cut(s)	124, 338
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	7 cut(s)	147, 323, 345, 402, 483, 561, 625
FspBI	CTAG	2 cut(s)	167, 621
FspI	TGCGCA	1 cut(s)	321
GlaI	GCGC	4 cut(s)	23, 223, 321, 502
GluI	GCNGC	7 cut(s)	147, 323, 345, 402, 483, 561, 625
GsaI	CCCAGC	4 cut(s)	165, 254, 596, 687
HaeII	RGCGCY	2 cut(s)	25, 225
HaeIII	GGCC	7 cut(s)	5, 59, 282, 527, 567, 610, 661
HapII	CCGG	4 cut(s)	369, 405, 564, 576
HhaI	GCGC	4 cut(s)	24, 224, 322, 503
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	191, 245, 526, 725
Hin6I	GCGC	4 cut(s)	22, 222, 320, 501
HinP1I	GCGC	4 cut(s)	22, 222, 320, 501
HincII	GTYRAC	2 cut(s)	135, 736
HindII	GTYRAC	2 cut(s)	135, 736
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	4 cut(s)	369, 405, 564, 576
HphI	GGTGA	3 cut(s)	250, 358, 439
Hpy166II	GTNNAC	5 cut(s)	135, 239, 247, 463, 736
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	5 cut(s)	135, 239, 247, 463, 736
HpyAV	CCTTC	2 cut(s)	358, 490
HpyCH4III	ACNGT	3 cut(s)	292, 395, 469
HpyCH4V	TGCA	5 cut(s)	68, 101, 209, 476, 725
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 65, 221, 341, 482, 507, 524, 685
HpyF3I	CTNAG	1 cut(s)	730
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	191, 245, 526, 725
HspAI	GCGC	4 cut(s)	22, 222, 320, 501
KasI	GGCGCC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	563
KroNI	GCCGGC	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	154, 438, 581, 645
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	6 cut(s)	133, 331, 334, 388, 494, 547
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	2 cut(s)	167, 621
MaeIII	GTNAC	2 cut(s)	256, 364
MalI	GATC	4 cut(s)	156, 440, 583, 647
MboI	GATC	4 cut(s)	154, 438, 581, 645
MboII	GAAGA	1 cut(s)	298
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	2 cut(s)	512, 663
MlsI	TGGCCA	3 cut(s)	5, 282, 527
MluCI	AATT	2 cut(s)	216, 381
MluNI	TGGCCA	3 cut(s)	5, 282, 527
Mly113I	GGCGCC	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	4 cut(s)	305, 365, 365, 674
Mox20I	TGGCCA	3 cut(s)	5, 282, 527
MroNI	GCCGGC	1 cut(s)	563
MscI	TGGCCA	3 cut(s)	5, 282, 527
MseI	TTAA	1 cut(s)	54
Msp20I	TGGCCA	3 cut(s)	5, 282, 527
MspA1I	CMGCKG	2 cut(s)	254, 485
MspCI	CTTAAG	1 cut(s)	53
MspI	CCGG	4 cut(s)	369, 405, 564, 576
MunI	CAATTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	8 cut(s)	11, 65, 221, 341, 482, 507, 524, 685
NaeI	GCCGGC	1 cut(s)	565
NarI	GGCGCC	1 cut(s)	222
NcoI	CCATGG	2 cut(s)	187, 522
NdeII	GATC	4 cut(s)	154, 438, 581, 645
NgoMIV	GCCGGC	1 cut(s)	563
NheI	GCTAGC	1 cut(s)	620
NlaIII	CATG	4 cut(s)	191, 245, 526, 725
NlaIV	GGNNCC	7 cut(s)	49, 223, 334, 415, 511, 661, 662
NmuCI	GTSAC	2 cut(s)	256, 364
NsbI	TGCGCA	1 cut(s)	321
NspI	RCATGY	2 cut(s)	245, 725
PaeI	GCATGC	1 cut(s)	725
PceI	AGGCCT	1 cut(s)	59
PciI	ACATGT	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PdiI	GCCGGC	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	7 cut(s)	148, 324, 346, 403, 484, 562, 626
PluTI	GGCGCC	1 cut(s)	225
PscI	ACATGT	1 cut(s)	241
PspEI	GGTNACC	1 cut(s)	256
PspFI	CCCAGC	4 cut(s)	161, 250, 592, 683
PspN4I	GGNNCC	7 cut(s)	49, 223, 334, 415, 511, 661, 662
PspOMI	GGGCCC	1 cut(s)	659
PspPI	GGNCC	4 cut(s)	566, 608, 659, 660
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	645
PvuII	CAGCTG	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	7 cut(s)	147, 323, 345, 402, 483, 561, 625
Sau3AI	GATC	4 cut(s)	154, 438, 581, 645
Sau96I	GGNCC	4 cut(s)	566, 608, 659, 660
SduI	GDGCHC	2 cut(s)	512, 663
SetI	ASST	6 cut(s)	86, 263, 327, 452, 487, 598
SfaNI	GCATC	1 cut(s)	312
SfoI	GGCGCC	1 cut(s)	223
SmlI	CTYRAG	2 cut(s)	53, 356
SmoI	CTYRAG	2 cut(s)	53, 356
SphI	GCATGC	1 cut(s)	725
Sse9I	AATT	2 cut(s)	216, 381
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	3 cut(s)	254, 579, 624
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	2 cut(s)	167, 621
StuI	AGGCCT	1 cut(s)	59
StyI	CCWWGG	2 cut(s)	187, 522
TaaI	ACNGT	3 cut(s)	292, 395, 469
TasI	AATT	2 cut(s)	216, 381
TauI	GCSGC	1 cut(s)	627
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	3 cut(s)	295, 304, 472
TseFI	GTSAC	2 cut(s)	256, 364
TseI	GCWGC	6 cut(s)	146, 322, 344, 401, 482, 560
Tsp45I	GTSAC	2 cut(s)	256, 364
TspDTI	ATGAA	4 cut(s)	64, 340, 526, 602
TspRI	CASTG	3 cut(s)	295, 304, 472
Van91I	CCANNNNNTGG	1 cut(s)	397
Vha464I	CTTAAG	1 cut(s)	53
XceI	RCATGY	2 cut(s)	245, 725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XspI	CTAG	2 cut(s)	167, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.