AT3G17020

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013062
Physical Location & Seq
Reverse (-)
5802493 .. 5804282
1790 bp
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UTR
Exon/CDS
Intron
AT3G17020.1

Sequence Viewer

Length: 492 bp
ATGGCGGAGAGTGGTGGACGAAGGATCGGAGTGGCGGTGGATTTCTCGGACTGCAGTAAGAAGGCTCTGAGCTGGGCGATCGATAACGTGGTTCGCGACGGAGATCATCTGATCCTAATCACTATTGCTCACGATATGAATTACGAGGAAGGCGAGATGCAGCTCTGGGAGACCGTTGGATCACCTTTTATTCCTATGAGTGAATTCTCTGACGCTGCTGTGATGAAAAAGTATGCATTGAAGCCAGATGCTGAAACCCTTGACATTGTCAATACTGCCGCTAGGAAGAAAACGATTACAGTAGTGATGAAGATATATTGGGGAGATCCTCGTGAGAAGATTTGTGCAGCAGCTGAACAGATTCCTCTCTCAAGCCTTGTGATGGGTAACAGAGGCCTTGGTGGTCTTAAGAGGATGATTATGGGAAGTGTAAGCAACCATGTTGTCAACAACGTTGCATGCCCTGTGACCGTTGTCAAGGCTCACATCTGA

Protein Analysis

163

Amino Acids

17.78

Weight (kDa)

6.41

Isoelectric Point (pI)

29.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 7 - 160 3.1e-31 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17020 AT3G17020
fragaria_vesca FvH4_4g19580
malus_domestica MD13G1155500.v1.1 MD16G1155000.v1.1
prunus_persica Prupe.1G118700_v2.0.a1
pyrus_communis pycom13g13240 pycom16g13140
rosa_chinensis RchiOBHm_Chr4g0424841
rosa_laevigata RLG00000007416
rosa_multiflora Rmu_sc0003608.1_g000024
rosa_roxburghii Rroxscaffold_5G00367060
rosa_rugosa Rorug04G0199500
rosa_samantha Rh4AG257300 Rh4BG262600 Rh4CG273600 Rh4DG258400
rosa_wichuraiana Rw4G022200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 96
AciI CCGC 3 cut(s) 5, 35, 279
AclI AACGTT 1 cut(s) 453
AclWI GGATC 4 cut(s) 32, 106, 187, 320
AcsI RAATTY 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 382
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 3 cut(s) 72, 163, 353
AluI AGCT 3 cut(s) 72, 163, 353
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 4 cut(s) 32, 106, 187, 320
AlwNI CAGNNNCTG 2 cut(s) 251, 353
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 4 cut(s) 160, 215, 347, 350
ApoI RAATTY 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 174
BauI CACGAG 1 cut(s) 330
BbvI GCAGC 4 cut(s) 172, 202, 359, 362
BccI CCATC 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 52
BfrI CTTAAG 1 cut(s) 407
BisI GCNGC 5 cut(s) 161, 216, 279, 348, 351
BlsI GCNGC 5 cut(s) 162, 217, 280, 349, 352
BmsI GCATC 2 cut(s) 147, 238
BoxI GACNNNNGTC 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 355
Bsa29I ATCGAT 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse8I GATNNNNATC 1 cut(s) 116
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 1 cut(s) 420
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 59
BseXI GCAGC 4 cut(s) 172, 202, 359, 362
BseYI CCCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 366
Bsh1236I CGCG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 396
BshVI ATCGAT 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 396
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 6 cut(s) 24, 78, 103, 111, 179, 325
Bsp68I TCGCGA 1 cut(s) 96
BspACI CCGC 3 cut(s) 5, 35, 279
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 60
BspDI ATCGAT 1 cut(s) 81
BspFNI CGCG 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 56
BspPI GGATC 4 cut(s) 32, 106, 187, 320
BspTI CTTAAG 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 6 cut(s) 24, 78, 103, 111, 179, 325
BssSI CACGAG 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 397
Bst2BI CACGAG 1 cut(s) 330
Bst4CI ACNGT 3 cut(s) 175, 301, 472
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 420
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 6 cut(s) 27, 81, 106, 114, 182, 328
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 6 cut(s) 24, 78, 103, 111, 179, 325
BstMCI CGRYCG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 462
BstPAI GACNNNNGTC 1 cut(s) 473
BstSFI CTRYAG 1 cut(s) 52
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 4 cut(s) 172, 202, 359, 362
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 1 cut(s) 396
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 1 cut(s) 420
BtuMI TCGCGA 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 460
CaiI CAGNNNCTG 2 cut(s) 251, 353
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 1 cut(s) 221
CviAII CATG 2 cut(s) 440, 459
CviJI RGCY 8 cut(s) 65, 72, 163, 244, 353, 375, 396, 482
CviKI_1 RGCY 8 cut(s) 65, 72, 163, 244, 353, 375, 396, 482
DdeI CTNAG 1 cut(s) 68
DpnI GATC 6 cut(s) 26, 80, 105, 113, 181, 327
DpnII GATC 6 cut(s) 24, 78, 103, 111, 179, 325
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 397
Eco147I AGGCCT 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 397
EcoT22I ATGCAT 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 2 cut(s) 443, 462
FaiI YATR 7 cut(s) 137, 197, 234, 316, 422, 441, 460
FatI CATG 2 cut(s) 439, 458
Fnu4HI GCNGC 5 cut(s) 161, 216, 279, 348, 351
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 5 cut(s) 161, 216, 279, 348, 351
FspBI CTAG 1 cut(s) 282
GluI GCNGC 5 cut(s) 161, 216, 279, 348, 351
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 396
HgaI GACGC 1 cut(s) 221
Hin1II CATG 2 cut(s) 443, 462
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 1 cut(s) 361
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 2 cut(s) 17, 448
Hpy188I TCNGA 6 cut(s) 29, 49, 69, 111, 211, 491
Hpy188III TCNNGA 3 cut(s) 95, 131, 332
Hpy8I GTNNAC 2 cut(s) 17, 448
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 3 cut(s) 15, 55, 143
HpyCH4III ACNGT 3 cut(s) 175, 301, 472
HpyCH4IV ACGT 2 cut(s) 87, 453
HpyCH4V TGCA 5 cut(s) 54, 160, 236, 347, 458
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 2 cut(s) 87, 453
Hsp92II CATG 2 cut(s) 443, 462
Kzo9I GATC 6 cut(s) 24, 78, 103, 111, 179, 325
LpnPI CCDG 4 cut(s) 58, 151, 258, 477
Lsp1109I GCAGC 4 cut(s) 172, 202, 359, 362
LweI GCATC 2 cut(s) 147, 238
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 87, 453
MaeIII GTNAC 2 cut(s) 386, 466
MalI GATC 6 cut(s) 26, 80, 105, 113, 181, 327
MboI GATC 6 cut(s) 24, 78, 103, 111, 179, 325
MboII GAAGA 3 cut(s) 298, 322, 349
MflI RGATCY 1 cut(s) 325
MluCI AATT 2 cut(s) 139, 203
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 5 cut(s) 139, 339, 375, 386, 405
Mph1103I ATGCAT 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 353
MspCI CTTAAG 1 cut(s) 407
MvnI CGCG 1 cut(s) 96
NdeII GATC 6 cut(s) 24, 78, 103, 111, 179, 325
NlaIII CATG 2 cut(s) 443, 462
NmuCI GTSAC 1 cut(s) 466
NruI TCGCGA 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 1 cut(s) 462
PaeI GCATGC 1 cut(s) 462
PceI AGGCCT 1 cut(s) 396
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 150
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 361
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 5 cut(s) 162, 217, 280, 349, 352
Ple19I CGATCG 1 cut(s) 81
PshAI GACNNNNGTC 1 cut(s) 473
Psp1406I AACGTT 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 72
PstI CTGCAG 1 cut(s) 56
PstNI CAGNNNCTG 2 cut(s) 251, 353
PsuI RGATCY 1 cut(s) 325
PsyI GACNNNGTC 1 cut(s) 266
PvuI CGATCG 1 cut(s) 81
PvuII CAGCTG 1 cut(s) 353
RruI TCGCGA 1 cut(s) 96
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 5 cut(s) 161, 216, 279, 348, 351
Sau3AI GATC 6 cut(s) 24, 78, 103, 111, 179, 325
SetI ASST 6 cut(s) 74, 90, 165, 187, 355, 456
SfaNI GCATC 2 cut(s) 147, 238
SfcI CTRYAG 1 cut(s) 52
SmlI CTYRAG 2 cut(s) 370, 407
SmoI CTYRAG 2 cut(s) 370, 407
SphI GCATGC 1 cut(s) 462
Sse9I AATT 2 cut(s) 139, 203
SseBI AGGCCT 1 cut(s) 396
SsiI CCGC 3 cut(s) 5, 35, 279
SspMI CTAG 1 cut(s) 282
StuI AGGCCT 1 cut(s) 396
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 3 cut(s) 175, 301, 472
TaiI ACGT 2 cut(s) 90, 456
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 139, 203
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 4 cut(s) 160, 215, 347, 350
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 3 cut(s) 152, 239, 323
TspGWI ACGGA 1 cut(s) 114
Tth111I GACNNNGTC 1 cut(s) 266
Vha464I CTTAAG 1 cut(s) 407
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.