Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013062

Physical Location & Seq

Genomic Coordinates Forward (+)

9312212 .. 9313983

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G118700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGAGAAAGGAGAATTGGAGTGGCGGTGGATTTCTCGGCTGGCAGCCGGGCAGCCCTGAAATGGGCAGTGGACAACGTTGCCAGGCAGGGCGATTTCCTCATCCTGGTCGTCGTTCGTCCTGAAGAGAACTATGAGCAAGGCGAGATGCAGCTCTGGGGAGTCACCGGTTCCCCTTTGATCCCTGTGGTTGAGTTCTCTGATGCCAACGTTATGAAGAAGTATAAAGTGAATCCTGACCCTGAAACCTTGGACATCGCCAACACTGCGGCTAAGCAGAAAGAGATTACGGTGGTGATGAAGATCTACTGGGGCGACGCCCGTGAGAAGATCATTGAGGCTATTGACAAGATTCCCTTGAGCCTCCTTGTTATTGGAAACAGAGGCCTTGGCAAGCTCAAGAGGTACCAATCACAAACTCAAATCAATTATTTGTTGATGCATGAATTTGAGTTTGTGTTACAACCACATGTTTGTTGTTTTGGAATTTTTGAGTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

168

Amino Acids

18.83

Weight (kDa)

5.75

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17020 AT3G17020
fragaria_vesca	FvH4_4g19580
malus_domestica	MD13G1155500.v1.1 MD16G1155000.v1.1
prunus_persica	Prupe.1G118700_v2.0.a1
pyrus_communis	pycom13g13240 pycom16g13140
rosa_chinensis	RchiOBHm_Chr4g0424841
rosa_laevigata	RLG00000007416
rosa_multiflora	Rmu_sc0003608.1_g000024
rosa_roxburghii	Rroxscaffold_5G00367060
rosa_rugosa	Rorug04G0199500
rosa_samantha	Rh4AG257300 Rh4BG262600 Rh4CG273600 Rh4DG258400
rosa_wichuraiana	Rw4G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	405
AccB1I	GGYRCC	1 cut(s)	405
AciI	CCGC	2 cut(s)	26, 269
AclI	AACGTT	2 cut(s)	78, 210
AclWI	GGATC	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	446, 486
AcuI	CTGAAG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	3 cut(s)	63, 64, 106
AflIII	ACRYGT	1 cut(s)	469
AgeI	ACCGGT	1 cut(s)	167
AjnI	CCWGG	2 cut(s)	83, 105
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	154, 397
AluI	AGCT	2 cut(s)	154, 397
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	3 cut(s)	45, 53, 151
ApoI	RAATTY	2 cut(s)	446, 486
AsiGI	ACCGGT	1 cut(s)	167
Asp718I	GGTACC	1 cut(s)	405
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	157, 307
BanI	GGYRCC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	57, 65, 163
BciT130I	CCWGG	2 cut(s)	85, 107
BcnI	CCSGG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	4 cut(s)	46, 54, 152, 270
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	4 cut(s)	47, 55, 153, 271
Bme1390I	CCNGG	3 cut(s)	50, 85, 107
BmiI	GGNNCC	2 cut(s)	172, 407
BmrFI	CCNGG	3 cut(s)	50, 85, 107
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	3 cut(s)	138, 193, 429
BmuI	ACTGGG	1 cut(s)	319
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	379, 383
BpuMI	CCSGG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	249, 388
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 64, 106
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	302
BseBI	CCWGG	2 cut(s)	85, 107
BseDI	CCNNGG	2 cut(s)	249, 388
BseGI	GGATG	1 cut(s)	102
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	3 cut(s)	63, 64, 106
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	57, 65, 163
BshFI	GGCC	1 cut(s)	387
BshNI	GGYRCC	1 cut(s)	405
BshTI	ACCGGT	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	49, 168
BslI	CCNNNNNNNGG	3 cut(s)	63, 64, 106
BsnI	GGCC	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	180, 303, 330
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	2 cut(s)	26, 269
BspANI	GGCC	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	172, 407
BspPI	GGATC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	249, 388
BssMI	GATC	3 cut(s)	180, 303, 330
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	2 cut(s)	249, 388
Bst2UI	CCWGG	2 cut(s)	85, 107
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	43, 395
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	102
BstKTI	GATC	3 cut(s)	183, 306, 333
BstMBI	GATC	3 cut(s)	180, 303, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	2 cut(s)	85, 107
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	3 cut(s)	48, 83, 105
BstV1I	GCAGC	3 cut(s)	57, 65, 163
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	387
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	2 cut(s)	75, 264
BtsIMutI	CAGTG	2 cut(s)	75, 264
Cac8I	GCNNGC	2 cut(s)	43, 395
Cfr10I	RCCGGY	1 cut(s)	167
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	406
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	2 cut(s)	443, 470
CviJI	RGCY	9 cut(s)	41, 48, 56, 154, 272, 341, 363, 387, 397
CviKI_1	RGCY	9 cut(s)	41, 48, 56, 154, 272, 341, 363, 387, 397
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	3 cut(s)	182, 305, 332
DpnII	GATC	3 cut(s)	180, 303, 330
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	249, 388
Eco147I	AGGCCT	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	83, 105
EcoT14I	CCWWGG	2 cut(s)	249, 388
EcoT22I	ATGCAT	1 cut(s)	444
ErhI	CCWWGG	2 cut(s)	249, 388
FaeI	CATG	2 cut(s)	446, 473
FaiI	YATR	5 cut(s)	135, 215, 225, 444, 471
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	2 cut(s)	442, 469
Fnu4HI	GCNGC	4 cut(s)	46, 54, 152, 270
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	4 cut(s)	46, 54, 152, 270
GluI	GCNGC	4 cut(s)	46, 54, 152, 270
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	2 cut(s)	49, 168
HgaI	GACGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	446, 473
HinfI	GANTC	3 cut(s)	162, 232, 352
HpaII	CCGG	2 cut(s)	49, 168
HphI	GGTGA	2 cut(s)	157, 307
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	3 cut(s)	122, 236, 400
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	2 cut(s)	116, 320
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	2 cut(s)	78, 210
HpyCH4V	TGCA	2 cut(s)	151, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	78, 210
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	446, 473
KpnI	GGTACC	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	180, 303, 330
Lsp1109I	GCAGC	3 cut(s)	57, 65, 163
LweI	GCATC	3 cut(s)	138, 193, 429
MaeII	ACGT	2 cut(s)	78, 210
MaeIII	GTNAC	2 cut(s)	163, 459
MalI	GATC	3 cut(s)	182, 305, 332
MboI	GATC	3 cut(s)	180, 303, 330
MboII	GAAGA	4 cut(s)	137, 229, 313, 340
MflI	RGATCY	1 cut(s)	303
MluCI	AATT	4 cut(s)	15, 427, 446, 486
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	5 cut(s)	110, 331, 374, 377, 396
Mph1103I	ATGCAT	1 cut(s)	444
MspI	CCGG	2 cut(s)	49, 168
MspR9I	CCNGG	3 cut(s)	50, 85, 107
MvaI	CCWGG	2 cut(s)	85, 107
MwoI	GCNNNNNNNGC	1 cut(s)	266
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	3 cut(s)	180, 303, 330
NlaIII	CATG	2 cut(s)	446, 473
NlaIV	GGNNCC	2 cut(s)	172, 407
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	444
NspI	RCATGY	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	387
PciI	ACATGT	1 cut(s)	469
PfeI	GAWTC	2 cut(s)	232, 352
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	4 cut(s)	47, 55, 153, 271
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PscI	ACATGT	1 cut(s)	469
Psp1406I	AACGTT	2 cut(s)	78, 210
Psp6I	CCWGG	2 cut(s)	83, 105
PspGI	CCWGG	2 cut(s)	83, 105
PspN4I	GGNNCC	2 cut(s)	172, 407
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SatI	GCNGC	4 cut(s)	46, 54, 152, 270
Sau3AI	GATC	3 cut(s)	180, 303, 330
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	3 cut(s)	50, 85, 107
SetI	ASST	6 cut(s)	81, 156, 213, 251, 399, 407
SfaNI	GCATC	3 cut(s)	138, 193, 429
SmlI	CTYRAG	2 cut(s)	358, 398
SmoI	CTYRAG	2 cut(s)	358, 398
Sse9I	AATT	4 cut(s)	15, 427, 446, 486
SseBI	AGGCCT	1 cut(s)	387
SsiI	CCGC	2 cut(s)	26, 269
StuI	AGGCCT	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	48, 83, 105
StyI	CCWWGG	2 cut(s)	249, 388
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	2 cut(s)	81, 213
TasI	AATT	4 cut(s)	15, 427, 446, 486
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	232, 352
TscAI	CASTG	2 cut(s)	75, 271
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	3 cut(s)	45, 53, 151
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	230, 314, 459
TspRI	CASTG	2 cut(s)	75, 271
XapI	RAATTY	2 cut(s)	446, 486
XceI	RCATGY	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.