MD13G1155500.v1.1

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013062
Physical Location & Seq
Forward (+)
12116674 .. 12118479
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1155500.v1.1.491

Sequence Viewer

Length: 495 bp
ATGGAAGACAGGAGAGTAGGAGTGGCAGTGGATTTCTCGCCGGGCAGCAGGGCAGCCCTGAAATGGGCTGTCGAGAACGTTGCCCGGAAAGGCGATCACCTTATCCTGGTGGTGGTCCGGCCTGAAGAGTACTACGAGCAGGGCGAGATGCAGCTCTGGGGCGTCACCGGTTCACCTTTGATTCCTGTGAAGGATTTTTCTGATCCCAACGTTATGAAGAAGTATGGAGTGAACCCTGACGCTGAAACCATCAACATCGCCAACGGTGCGACGCAGAAAGAGGTTACGGTGGTGATGAAGATCTACTGGGGCGATGCCCGTGAGAAGATTCTTGAGGCTATTGACAAGACCCCCTTGAGCTTCCTTGTTATTGGAAGCAGAGGCCTTGGCAAGATTCAGAGGGTTATAATGGGCAGTGTCAGCATCCATATCGTAAATAATGCTTCGTGCCCAGTTACTGTCGTCAAGAGTCACTATGAGTCTCATGACAACTAA

Protein Analysis

165

Amino Acids

18.1

Weight (kDa)

6.42

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 4 - 156 6.2e-26 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17020 AT3G17020
fragaria_vesca FvH4_4g19580
malus_domestica MD13G1155500.v1.1 MD16G1155000.v1.1
prunus_persica Prupe.1G118700_v2.0.a1
pyrus_communis pycom13g13240 pycom16g13140
rosa_chinensis RchiOBHm_Chr4g0424841
rosa_laevigata RLG00000007416
rosa_multiflora Rmu_sc0003608.1_g000024
rosa_roxburghii Rroxscaffold_5G00367060
rosa_rugosa Rorug04G0199500
rosa_samantha Rh4AG257300 Rh4BG262600 Rh4CG273600 Rh4DG258400
rosa_wichuraiana Rw4G022200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AclI AACGTT 2 cut(s) 78, 210
AclWI GGATC 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 4 cut(s) 63, 64, 106, 112
AgeI ACCGGT 1 cut(s) 167
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 2 cut(s) 154, 360
AluI AGCT 2 cut(s) 154, 360
Alw26I GTCTC 1 cut(s) 486
AlwI GGATC 1 cut(s) 197
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 2 cut(s) 119, 382
ApeKI GCWGC 3 cut(s) 45, 53, 151
AsiGI ACCGGT 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 2 cut(s) 42, 85
AsuHPI GGTGA 4 cut(s) 89, 157, 165, 304
AvaII GGWCC 1 cut(s) 115
BaeGI GKGCMC 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 3 cut(s) 57, 65, 163
BccI CCATC 1 cut(s) 257
BcgI CGANNNNNNTGC 4 cut(s) 62, 96, 412, 446
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 2 cut(s) 42, 85
BcoDI GTCTC 1 cut(s) 486
BglII AGATCT 1 cut(s) 300
BisI GCNGC 3 cut(s) 46, 54, 152
BlsI GCNGC 3 cut(s) 47, 55, 153
BmcAI AGTACT 1 cut(s) 131
Bme1390I CCNGG 3 cut(s) 42, 85, 107
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmrFI CCNGG 3 cut(s) 42, 85, 107
BmrI ACTGGG 2 cut(s) 316, 446
BmsI GCATC 3 cut(s) 138, 304, 432
BmuI ACTGGG 2 cut(s) 316, 446
BpiI GAAGAC 1 cut(s) 12
BpuEI CTTGAG 2 cut(s) 353, 376
BpuMI CCSGG 2 cut(s) 42, 85
BsaBI GATNNNNATC 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 385
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 64, 106, 112
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 311, 452
Bse8I GATNNNNATC 1 cut(s) 299
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 1 cut(s) 423
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 4 cut(s) 63, 64, 106, 112
BseNI ACTGG 2 cut(s) 311, 452
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 3 cut(s) 57, 65, 163
BshFI GGCC 2 cut(s) 121, 384
BshTI ACCGGT 1 cut(s) 167
BsiSI CCGG 4 cut(s) 41, 85, 118, 168
BslI CCNNNNNNNGG 4 cut(s) 63, 64, 106, 112
BsmAI GTCTC 1 cut(s) 486
BsnI GGCC 2 cut(s) 121, 384
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 3 cut(s) 94, 202, 300
BspANI GGCC 2 cut(s) 121, 384
BspHI TCATGA 1 cut(s) 484
BspPI GGATC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 2 cut(s) 311, 452
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 3 cut(s) 94, 202, 300
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 385
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 3 cut(s) 266, 289, 460
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 162
BstF5I GGATG 1 cut(s) 423
BstKTI GATC 3 cut(s) 97, 205, 303
BstMAI GTCTC 1 cut(s) 486
BstMBI GATC 3 cut(s) 94, 202, 300
BstMWI GCNNNNNNNGC 2 cut(s) 266, 420
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 40, 83, 105
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 57, 65, 163
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BsuRI GGCC 2 cut(s) 121, 384
BtgZI GCGATG 2 cut(s) 241, 327
BtsCI GGATG 1 cut(s) 423
BtsI GCAGTG 2 cut(s) 33, 421
BtsIMutI CAGTG 2 cut(s) 33, 421
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 1 cut(s) 484
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 115
CseI GACGC 3 cut(s) 151, 248, 280
Csp6I GTAC 1 cut(s) 130
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 1 cut(s) 485
CviJI RGCY 7 cut(s) 56, 68, 121, 154, 338, 360, 384
CviKI_1 RGCY 7 cut(s) 56, 68, 121, 154, 338, 360, 384
CviQI GTAC 1 cut(s) 130
DpnI GATC 3 cut(s) 96, 204, 302
DpnII GATC 3 cut(s) 94, 202, 300
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 385
Eco147I AGGCCT 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 1 cut(s) 488
FaiI YATR 6 cut(s) 215, 225, 407, 429, 477, 486
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 1 cut(s) 484
Fnu4HI GCNGC 3 cut(s) 46, 54, 152
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 3 cut(s) 46, 54, 152
GluI GCNGC 3 cut(s) 46, 54, 152
HaeIII GGCC 2 cut(s) 121, 384
HapII CCGG 4 cut(s) 41, 85, 118, 168
HgaI GACGC 3 cut(s) 151, 248, 280
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 1 cut(s) 488
HinfI GANTC 5 cut(s) 181, 328, 394, 469, 479
HpaII CCGG 4 cut(s) 41, 85, 118, 168
HphI GGTGA 4 cut(s) 89, 157, 165, 304
Hpy166II GTNNAC 2 cut(s) 173, 232
Hpy188I TCNGA 2 cut(s) 202, 399
Hpy188III TCNNGA 4 cut(s) 73, 332, 466, 485
Hpy8I GTNNAC 2 cut(s) 173, 232
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 3 cut(s) 266, 289, 460
HpyCH4IV ACGT 2 cut(s) 78, 210
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 420
HpySE526I ACGT 2 cut(s) 78, 210
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 488
Kzo9I GATC 3 cut(s) 94, 202, 300
Lsp1109I GCAGC 3 cut(s) 57, 65, 163
LweI GCATC 3 cut(s) 138, 304, 432
MaeII ACGT 2 cut(s) 78, 210
MaeIII GTNAC 4 cut(s) 163, 283, 454, 470
MalI GATC 3 cut(s) 96, 204, 302
MboI GATC 3 cut(s) 94, 202, 300
MboII GAAGA 5 cut(s) 17, 137, 229, 310, 337
MflI RGATCY 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 452
MlyI GAGTC 2 cut(s) 478, 488
MnlI CCTC 4 cut(s) 274, 328, 374, 393
MspI CCGG 4 cut(s) 41, 85, 118, 168
MspR9I CCNGG 3 cut(s) 42, 85, 107
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 266, 420
NciI CCSGG 2 cut(s) 42, 85
NdeII GATC 3 cut(s) 94, 202, 300
NlaIII CATG 1 cut(s) 488
NmuCI GTSAC 2 cut(s) 163, 470
PagI TCATGA 1 cut(s) 484
PceI AGGCCT 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 3 cut(s) 181, 328, 394
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 3 cut(s) 47, 55, 153
PleI GAGTC 2 cut(s) 477, 487
PpsI GAGTC 2 cut(s) 477, 487
PsiI TTATAA 1 cut(s) 407
Psp1406I AACGTT 2 cut(s) 78, 210
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspPI GGNCC 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 300
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SatI GCNGC 3 cut(s) 46, 54, 152
Sau3AI GATC 3 cut(s) 94, 202, 300
Sau96I GGNCC 1 cut(s) 115
ScaI AGTACT 1 cut(s) 131
SchI GAGTC 2 cut(s) 478, 488
ScrFI CCNGG 3 cut(s) 42, 85, 107
SduI GDGCHC 1 cut(s) 452
SetI ASST 7 cut(s) 81, 102, 156, 178, 213, 285, 362
SfaNI GCATC 3 cut(s) 138, 304, 432
SinI GGWCC 1 cut(s) 115
SmlI CTYRAG 2 cut(s) 332, 355
SmoI CTYRAG 2 cut(s) 332, 355
SseBI AGGCCT 1 cut(s) 384
StuI AGGCCT 1 cut(s) 384
StyD4I CCNGG 3 cut(s) 40, 83, 105
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 3 cut(s) 266, 289, 460
TaiI ACGT 2 cut(s) 81, 213
TaqI TCGA 1 cut(s) 72
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 3 cut(s) 181, 328, 394
TscAI CASTG 2 cut(s) 33, 421
TseFI GTSAC 2 cut(s) 163, 470
TseI GCWGC 3 cut(s) 45, 53, 151
Tsp45I GTSAC 2 cut(s) 163, 470
TspDTI ATGAA 2 cut(s) 230, 311
TspRI CASTG 2 cut(s) 33, 421
VpaK11BI GGWCC 1 cut(s) 115
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.