MD16G1155000.v1.1

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013062
Physical Location & Seq
Forward (+)
12292080 .. 12294586
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1155000.v1.1.491

Sequence Viewer

Length: 495 bp
ATGGAAGACAGGAGAGTGGGGGTGGCGGTGGATTTCTCGCCGGGCAGCAGGGCGGCCCTGAAATGGGCGGTCGAGAACGTTGTCCGGAAAGGCGATCACCTTATCTTGGTTGTCGTCCGGCCTGAAGAGAACTACGAGCAGGGAGAGATGCAGCTGTGGGGCGTCACCGGTTCACCTTTGATTCCTGTGAAGGAGTTTTCTGATCCCACCATCATGAAGAAATATGGAGTGACGCCTGACGCTGAAACCATCGACATCGCCGACACTGCGACGCAGAAAGAGGTTACGGTGGTGATGAAGATCTACTGGGGCGATGCCCGTGAGAAGATTCTCGAGGCAATTGACAAGACCCCCTTGAGCTTCCTTGTTATTGGAAACAGAGGCCTTGGCAAGCTTAAGAGGGTTATAATGGGCAGTGTCAGCAACCATATCGTAAATAATGCTTCGTGCCCAGTTACTGTCGTCAAGACTAGTTCTGAGTCCCATGCCAGCTAA

Protein Analysis

165

Amino Acids

17.98

Weight (kDa)

6.31

Isoelectric Point (pI)

25.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 4 - 156 9.6e-27 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17020 AT3G17020
fragaria_vesca FvH4_4g19580
malus_domestica MD13G1155500.v1.1 MD16G1155000.v1.1
prunus_persica Prupe.1G118700_v2.0.a1
pyrus_communis pycom13g13240 pycom16g13140
rosa_chinensis RchiOBHm_Chr4g0424841
rosa_laevigata RLG00000007416
rosa_multiflora Rmu_sc0003608.1_g000024
rosa_roxburghii Rroxscaffold_5G00367060
rosa_rugosa Rorug04G0199500
rosa_samantha Rh4AG257300 Rh4BG262600 Rh4CG273600 Rh4DG258400
rosa_wichuraiana Rw4G022200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AccIII TCCGGA 1 cut(s) 84
AciI CCGC 3 cut(s) 26, 53, 68
AclI AACGTT 1 cut(s) 78
AclWI GGATC 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 2 cut(s) 162, 233
AfiI CCNNNNNNNGG 3 cut(s) 63, 64, 106
AflII CTTAAG 1 cut(s) 395
AgeI ACCGGT 1 cut(s) 167
AhlI ACTAGT 1 cut(s) 470
AluBI AGCT 4 cut(s) 154, 360, 394, 492
AluI AGCT 4 cut(s) 154, 360, 394, 492
AlwI GGATC 1 cut(s) 197
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 332
Aor13HI TCCGGA 1 cut(s) 84
AoxI GGCC 3 cut(s) 54, 119, 382
ApeKI GCWGC 2 cut(s) 45, 151
AsiGI ACCGGT 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 4 cut(s) 89, 157, 165, 304
AvaI CYCGRG 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 57, 163
BccI CCATC 2 cut(s) 218, 257
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BcnI CCSGG 1 cut(s) 42
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 1 cut(s) 471
BfrI CTTAAG 1 cut(s) 395
BglII AGATCT 1 cut(s) 300
BisI GCNGC 3 cut(s) 46, 54, 152
BlsI GCNGC 3 cut(s) 47, 55, 153
Bme1390I CCNGG 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 42
BmrI ACTGGG 2 cut(s) 316, 446
BmsI GCATC 2 cut(s) 138, 304
BmuI ACTGGG 2 cut(s) 316, 446
BpiI GAAGAC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 299
BsaHI GRCGYC 2 cut(s) 162, 233
BsaJI CCNNGG 1 cut(s) 385
BsaWI WCCGGW 2 cut(s) 84, 167
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 64, 106
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 311, 452
Bse8I GATNNNNATC 1 cut(s) 299
BseAI TCCGGA 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 385
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 3 cut(s) 63, 64, 106
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 2 cut(s) 311, 452
BseSI GKGCMC 1 cut(s) 452
BseXI GCAGC 2 cut(s) 57, 163
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 3 cut(s) 56, 121, 384
BshTI ACCGGT 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 4 cut(s) 41, 85, 118, 168
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 3 cut(s) 63, 64, 106
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 3 cut(s) 56, 121, 384
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 452
Bsp13I TCCGGA 1 cut(s) 84
Bsp143I GATC 3 cut(s) 94, 202, 300
BspACI CCGC 3 cut(s) 26, 53, 68
BspANI GGCC 3 cut(s) 56, 121, 384
BspCNI CTCAG 1 cut(s) 469
BspEI TCCGGA 1 cut(s) 84
BspHI TCATGA 1 cut(s) 213
BspPI GGATC 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 2 cut(s) 311, 452
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 3 cut(s) 94, 202, 300
BssNI GRCGYC 2 cut(s) 162, 233
BssT1I CCWWGG 1 cut(s) 385
Bst4CI ACNGT 2 cut(s) 289, 460
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 2 cut(s) 162, 233
BstAFI CTTAAG 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 392, 490
BstDEI CTNAG 1 cut(s) 477
BstKTI GATC 3 cut(s) 97, 205, 303
BstMBI GATC 3 cut(s) 94, 202, 300
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 266, 420
BstSCI CCNGG 1 cut(s) 40
BstSLI GKGCMC 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 57, 163
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BsuRI GGCC 3 cut(s) 56, 121, 384
BtgZI GCGATG 2 cut(s) 241, 327
BtsI GCAGTG 2 cut(s) 264, 421
BtsIMutI CAGTG 2 cut(s) 264, 421
Cac8I GCNNGC 2 cut(s) 392, 490
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 1 cut(s) 213
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 4 cut(s) 151, 241, 248, 280
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 2 cut(s) 214, 485
CviJI RGCY 7 cut(s) 56, 121, 154, 360, 384, 394, 492
CviKI_1 RGCY 7 cut(s) 56, 121, 154, 360, 384, 394, 492
DdeI CTNAG 1 cut(s) 477
DpnI GATC 3 cut(s) 96, 204, 302
DpnII GATC 3 cut(s) 94, 202, 300
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 385
Eco147I AGGCCT 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 2 cut(s) 217, 488
FaiI YATR 5 cut(s) 215, 225, 407, 429, 486
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 466
FatI CATG 2 cut(s) 213, 484
Fnu4HI GCNGC 3 cut(s) 46, 54, 152
Fsp4HI GCNGC 3 cut(s) 46, 54, 152
FspBI CTAG 1 cut(s) 471
GluI GCNGC 3 cut(s) 46, 54, 152
HaeIII GGCC 3 cut(s) 56, 121, 384
HapII CCGG 4 cut(s) 41, 85, 118, 168
HgaI GACGC 4 cut(s) 151, 241, 248, 280
Hin1I GRCGYC 2 cut(s) 162, 233
Hin1II CATG 2 cut(s) 217, 488
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 3 cut(s) 181, 328, 479
HpaII CCGG 4 cut(s) 41, 85, 118, 168
HphI GGTGA 4 cut(s) 89, 157, 165, 304
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 202, 478
Hpy188III TCNNGA 5 cut(s) 73, 85, 214, 332, 466
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 289, 460
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 420
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 2 cut(s) 162, 233
Hsp92II CATG 2 cut(s) 217, 488
Kpn2I TCCGGA 1 cut(s) 84
Kzo9I GATC 3 cut(s) 94, 202, 300
Lsp1109I GCAGC 2 cut(s) 57, 163
LweI GCATC 2 cut(s) 138, 304
MaeI CTAG 1 cut(s) 471
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 4 cut(s) 163, 229, 283, 454
MalI GATC 3 cut(s) 96, 204, 302
MboI GATC 3 cut(s) 94, 202, 300
MboII GAAGA 5 cut(s) 17, 137, 229, 310, 337
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 1 cut(s) 339
MlyI GAGTC 1 cut(s) 488
MnlI CCTC 4 cut(s) 274, 328, 374, 393
MroI TCCGGA 1 cut(s) 84
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 154
MspCI CTTAAG 1 cut(s) 395
MspI CCGG 4 cut(s) 41, 85, 118, 168
MspR9I CCNGG 1 cut(s) 42
MunI CAATTG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 266, 420
NciI CCSGG 1 cut(s) 42
NdeII GATC 3 cut(s) 94, 202, 300
NlaIII CATG 2 cut(s) 217, 488
NmuCI GTSAC 2 cut(s) 163, 229
PaeR7I CTCGAG 1 cut(s) 332
PagI TCATGA 1 cut(s) 213
PceI AGGCCT 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 2 cut(s) 181, 328
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 3 cut(s) 47, 55, 153
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
PsiI TTATAA 1 cut(s) 407
Psp1406I AACGTT 1 cut(s) 78
PspPI GGNCC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 300
PvuII CAGCTG 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 3 cut(s) 46, 54, 152
Sau3AI GATC 3 cut(s) 94, 202, 300
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 452
SetI ASST 8 cut(s) 81, 102, 156, 178, 285, 362, 396, 494
SfaNI GCATC 2 cut(s) 138, 304
Sfr274I CTCGAG 1 cut(s) 332
SlaI CTCGAG 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 212
SmlI CTYRAG 3 cut(s) 332, 355, 395
SmoI CTYRAG 3 cut(s) 332, 355, 395
SpeI ACTAGT 1 cut(s) 470
Sse9I AATT 1 cut(s) 339
SseBI AGGCCT 1 cut(s) 384
SsiI CCGC 3 cut(s) 26, 53, 68
SspMI CTAG 1 cut(s) 471
StuI AGGCCT 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 2 cut(s) 289, 460
TaiI ACGT 1 cut(s) 81
TaqI TCGA 3 cut(s) 72, 252, 333
TasI AATT 1 cut(s) 339
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 181, 328
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 2 cut(s) 271, 421
TseFI GTSAC 2 cut(s) 163, 229
TseI GCWGC 2 cut(s) 45, 151
Tsp45I GTSAC 2 cut(s) 163, 229
TspDTI ATGAA 2 cut(s) 230, 311
TspRI CASTG 2 cut(s) 271, 421
Vha464I CTTAAG 1 cut(s) 395
XhoI CTCGAG 1 cut(s) 332
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.