Rh4BG262600

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013062
Physical Location & Seq
Reverse (-)
43566947 .. 43568099
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG262600.1

Sequence Viewer

Length: 486 bp
ATGGAGGCAGAAAGAAGAATCGGAGTAGCGGTGGATTTCTCGCCGTGCAGCAGAGCAGCCCTGAAATGGGCCGTCGACAACGTCGCCCGGAAAGGGGATCACCTCATCCTGGTCATCGTCCGCCCCGAACAGGTTTACGAGCACGGCGAGATGCAGCTCTGGGGAGTCTCCGGGTCTCCTTTGATTCCTCTGGTGGAGTTCTCTGATGTTCATATTATGAACAAGTATGAAGTGAAGCCTGACCCGGAGACCGTGGAGATAATCACCACTGCAGCTAGCCAGAAAGAGATCACGGTGCTGGTGAAGATCTACTGGGGTGATGCCCGTGAGAAGATTATTGAGGCCGTTGACAAGATTCCCTTGAGCTTCCTTGTGATGGGAAACAGAGGGCTTGGCAAGCTTAAGAGGGTTATTATGGGCAGTGTGAGCAACTATGTGGTAAACAATGCGCGTTGTCCCGTTACTGTAGTCAAGAGTGATGCCTAA

Protein Analysis

161

Amino Acids

17.87

Weight (kDa)

6.84

Isoelectric Point (pI)

23.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 158 2.8e-29 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17020 AT3G17020
fragaria_vesca FvH4_4g19580
malus_domestica MD13G1155500.v1.1 MD16G1155000.v1.1
prunus_persica Prupe.1G118700_v2.0.a1
pyrus_communis pycom13g13240 pycom16g13140
rosa_chinensis RchiOBHm_Chr4g0424841
rosa_laevigata RLG00000007416
rosa_multiflora Rmu_sc0003608.1_g000024
rosa_roxburghii Rroxscaffold_5G00367060
rosa_rugosa Rorug04G0199500
rosa_samantha Rh4AG257300 Rh4BG262600 Rh4CG273600 Rh4DG258400
rosa_wichuraiana Rw4G022200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AccII CGCG 1 cut(s) 451
AciI CCGC 2 cut(s) 29, 121
AclWI GGATC 1 cut(s) 105
AfiI CCNNNNNNNGG 7 cut(s) 66, 67, 93, 94, 109, 130, 376
AflII CTTAAG 1 cut(s) 401
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 4 cut(s) 157, 275, 366, 400
AluI AGCT 4 cut(s) 157, 275, 366, 400
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 172, 180, 242
AlwI GGATC 1 cut(s) 105
AoxI GGCC 2 cut(s) 69, 342
ApeKI GCWGC 4 cut(s) 48, 56, 154, 272
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 3 cut(s) 88, 172, 245
AsuHPI GGTGA 4 cut(s) 92, 256, 313, 329
AsuNHI GCTAGC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 4 cut(s) 60, 68, 166, 284
BccI CCATC 1 cut(s) 370
BceAI ACGGC 4 cut(s) 28, 56, 160, 329
BciT130I CCWGG 1 cut(s) 110
BcnI CCSGG 3 cut(s) 88, 172, 245
BcoDI GTCTC 3 cut(s) 172, 180, 242
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 2 cut(s) 270, 465
BfrI CTTAAG 1 cut(s) 401
BglII AGATCT 1 cut(s) 306
BisI GCNGC 4 cut(s) 49, 57, 155, 273
BlsI GCNGC 4 cut(s) 50, 58, 156, 274
Bme1390I CCNGG 4 cut(s) 88, 110, 172, 245
BmgT120I GGNCC 1 cut(s) 69
BmrFI CCNGG 4 cut(s) 88, 110, 172, 245
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 141, 310, 469
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 382
BpuMI CCSGG 3 cut(s) 88, 172, 245
BsaI GGTCTC 2 cut(s) 180, 242
BsaJI CCNNGG 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 7 cut(s) 66, 67, 93, 94, 109, 130, 376
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 7 cut(s) 66, 67, 93, 94, 109, 130, 376
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 4 cut(s) 60, 68, 166, 284
BsgI GTGCAG 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 451
BshFI GGCC 2 cut(s) 71, 344
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 3 cut(s) 88, 171, 245
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 7 cut(s) 66, 67, 93, 94, 109, 130, 376
BsmAI GTCTC 3 cut(s) 172, 180, 242
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 2 cut(s) 71, 344
Bso31I GGTCTC 2 cut(s) 180, 242
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 3 cut(s) 97, 288, 306
BspACI CCGC 2 cut(s) 29, 121
BspANI GGCC 2 cut(s) 71, 344
BspFNI CGCG 1 cut(s) 451
BspMAI CTGCAG 1 cut(s) 274
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 1 cut(s) 105
BspTI CTTAAG 1 cut(s) 401
BspTNI GGTCTC 2 cut(s) 180, 242
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 97, 288, 306
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 3 cut(s) 253, 295, 466
BstAFI CTTAAG 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 277, 398
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 451
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 100, 291, 309
BstMAI GTCTC 3 cut(s) 172, 180, 242
BstMBI GATC 3 cut(s) 97, 288, 306
BstMWI GCNNNNNNNGC 2 cut(s) 397, 426
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 4 cut(s) 86, 108, 170, 243
BstSFI CTRYAG 2 cut(s) 270, 465
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 4 cut(s) 60, 68, 166, 284
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BsuRI GGCC 2 cut(s) 71, 344
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 2 cut(s) 267, 427
BtsIMutI CAGTG 2 cut(s) 267, 427
Cac8I GCNNGC 2 cut(s) 277, 398
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 69
DpnI GATC 3 cut(s) 99, 290, 308
DpnII GATC 3 cut(s) 97, 288, 306
EciI GGCGGA 1 cut(s) 110
Eco31I GGTCTC 2 cut(s) 180, 242
EcoRII CCWGG 1 cut(s) 108
FaiI YATR 5 cut(s) 213, 218, 228, 416, 435
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 1 cut(s) 441
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 4 cut(s) 49, 57, 155, 273
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 4 cut(s) 49, 57, 155, 273
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 450
GluI GCNGC 4 cut(s) 49, 57, 155, 273
HaeIII GGCC 2 cut(s) 71, 344
HapII CCGG 3 cut(s) 88, 171, 245
HhaI GCGC 1 cut(s) 451
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 2 cut(s) 76, 349
HindII GTYRAC 2 cut(s) 76, 349
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 4 cut(s) 18, 165, 184, 355
HpaII CCGG 3 cut(s) 88, 171, 245
HphI GGTGA 4 cut(s) 92, 256, 313, 329
Hpy166II GTNNAC 4 cut(s) 76, 136, 349, 442
Hpy188I TCNGA 2 cut(s) 23, 205
Hpy188III TCNNGA 1 cut(s) 472
Hpy8I GTNNAC 4 cut(s) 76, 136, 349, 442
Hpy99I CGWCG 2 cut(s) 77, 86
HpyCH4III ACNGT 3 cut(s) 253, 295, 466
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 48, 154, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 397, 426
HpySE526I ACGT 1 cut(s) 81
HspAI GCGC 1 cut(s) 449
Kzo9I GATC 3 cut(s) 97, 288, 306
Lsp1109I GCAGC 4 cut(s) 60, 68, 166, 284
LweI GCATC 3 cut(s) 141, 310, 469
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 460
MalI GATC 3 cut(s) 99, 290, 308
MboI GATC 3 cut(s) 97, 288, 306
MboII GAAGA 3 cut(s) 27, 316, 343
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 144
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 5 cut(s) 113, 198, 334, 380, 399
MseI TTAA 1 cut(s) 402
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 3 cut(s) 88, 171, 245
MspR9I CCNGG 4 cut(s) 88, 110, 172, 245
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 2 cut(s) 397, 426
NciI CCSGG 3 cut(s) 88, 172, 245
NdeII GATC 3 cut(s) 97, 288, 306
NheI GCTAGC 1 cut(s) 275
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 144
PfeI GAWTC 3 cut(s) 18, 184, 355
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 4 cut(s) 50, 58, 156, 274
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspPI GGNCC 1 cut(s) 69
PstI CTGCAG 1 cut(s) 274
PsuI RGATCY 1 cut(s) 306
PsyI GACNNNGTC 1 cut(s) 80
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 4 cut(s) 49, 57, 155, 273
Sau3AI GATC 3 cut(s) 97, 288, 306
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 4 cut(s) 88, 110, 172, 245
SduI GDGCHC 1 cut(s) 144
SetI ASST 7 cut(s) 84, 105, 135, 159, 277, 368, 402
SfaNI GCATC 3 cut(s) 141, 310, 469
SfcI CTRYAG 2 cut(s) 270, 465
SmlI CTYRAG 2 cut(s) 361, 401
SmoI CTYRAG 2 cut(s) 361, 401
SsiI CCGC 2 cut(s) 29, 121
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 4 cut(s) 86, 108, 170, 243
TaaI ACNGT 3 cut(s) 253, 295, 466
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 75
TfiI GAWTC 3 cut(s) 18, 184, 355
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 2 cut(s) 274, 427
TseI GCWGC 4 cut(s) 48, 56, 154, 272
TspDTI ATGAA 3 cut(s) 200, 233, 243
TspRI CASTG 2 cut(s) 274, 427
Tth111I GACNNNGTC 1 cut(s) 80
Vha464I CTTAAG 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.