Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013062

Physical Location & Seq

Genomic Coordinates Reverse (-)

23196407 .. 23197567

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGACGCAGAAAGAAGAATCGGAGTAGCTGTGGATTTCTCGCCGTGCAGCAAAAAAGCACTGAAATGGGCCATCGACAACGTCGCCCGCAAAGGGGATCACCTCATCCTCGTCATCGTACGCCCCGCTGACGTATACGAGCACGGCGAGATGCAGCTCTGGGGTGTCACCGGTTCTCCTTTGATTCCTCTGCCGGAGTTTTCCGATGCTCATATTATGAACAAGTACGAAGTGAAGCCTGACGCGGAGACCGTGGACATAGTCACCACTGCGGCTAGCCAGAAAGAGATCACAGTGCTGGTGAAGATCTACTGGGGTGATGCCCGTGAGAAGATTATCGAGGCTATTGACAAGATTCCCTTGAGCTTCCTTGTGATGGGGAACAGAGGGCTTGGCACGCTTAAGAGGGTTATTATGGGCAGTGTGAGCAATTTTGTGGTAAACAATGCGCGTTGTCCAGTTACTGTAGTCAAGAGTGAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

162

Amino Acids

17.77

Weight (kDa)

6.83

Isoelectric Point (pI)

19.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	5 - 158	9.9e-29	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17020 AT3G17020
fragaria_vesca	FvH4_4g19580
malus_domestica	MD13G1155500.v1.1 MD16G1155000.v1.1
prunus_persica	Prupe.1G118700_v2.0.a1
pyrus_communis	pycom13g13240 pycom16g13140
rosa_chinensis	RchiOBHm_Chr4g0424841
rosa_laevigata	RLG00000007416
rosa_multiflora	Rmu_sc0003608.1_g000024
rosa_roxburghii	Rroxscaffold_5G00367060
rosa_rugosa	Rorug04G0199500
rosa_samantha	Rh4AG257300 Rh4BG262600 Rh4CG273600 Rh4DG258400
rosa_wichuraiana	Rw4G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	2 cut(s)	245, 451
AciI	CCGC	4 cut(s)	88, 126, 245, 272
AclWI	GGATC	1 cut(s)	105
AfaI	GTAC	2 cut(s)	120, 227
AfiI	CCNNNNNNNGG	3 cut(s)	93, 94, 376
AflII	CTTAAG	1 cut(s)	401
AgeI	ACCGGT	1 cut(s)	170
AluBI	AGCT	3 cut(s)	29, 157, 366
AluI	AGCT	3 cut(s)	29, 157, 366
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	242, 473
AlwI	GGATC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	48, 154
AsiGI	ACCGGT	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	5 cut(s)	92, 160, 256, 313, 329
AsuNHI	GCTAGC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	60, 166
BccI	CCATC	2 cut(s)	80, 370
BceAI	ACGGC	2 cut(s)	28, 160
BcoDI	GTCTC	2 cut(s)	242, 473
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	465
BfrI	CTTAAG	1 cut(s)	401
BglII	AGATCT	1 cut(s)	306
BisI	GCNGC	3 cut(s)	49, 155, 273
BlsI	GCNGC	3 cut(s)	50, 156, 274
BmgT120I	GGNCC	1 cut(s)	69
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	3 cut(s)	141, 196, 310
BmtI	GCTAGC	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	382
BsaI	GGTCTC	2 cut(s)	242, 473
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 160, 190
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 94, 376
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	317, 458
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	93, 94, 376
BseNI	ACTGG	2 cut(s)	317, 458
BseXI	GCAGC	2 cut(s)	60, 166
BsgI	GTGCAG	1 cut(s)	67
Bsh1236I	CGCG	2 cut(s)	245, 451
BshFI	GGCC	1 cut(s)	71
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	171, 194
BsiWI	CGTACG	1 cut(s)	118
BslI	CCNNNNNNNGG	3 cut(s)	93, 94, 376
BsmAI	GTCTC	2 cut(s)	242, 473
BsnI	GGCC	1 cut(s)	71
Bso31I	GGTCTC	2 cut(s)	242, 473
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	97, 288, 306
BspACI	CCGC	4 cut(s)	88, 126, 245, 272
BspANI	GGCC	1 cut(s)	71
BspFNI	CGCG	2 cut(s)	245, 451
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	105
BspTI	CTTAAG	1 cut(s)	401
BspTNI	GGTCTC	2 cut(s)	242, 473
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	317, 458
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	97, 288, 306
BssNAI	GTATAC	1 cut(s)	136
Bst1107I	GTATAC	1 cut(s)	136
Bst4CI	ACNGT	3 cut(s)	253, 295, 466
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	88, 277, 398
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	2 cut(s)	245, 451
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	3 cut(s)	100, 291, 309
BstMAI	GTCTC	2 cut(s)	242, 473
BstMBI	GATC	3 cut(s)	97, 288, 306
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 426
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	2 cut(s)	245, 451
BstV1I	GCAGC	2 cut(s)	60, 166
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BstZ17I	GTATAC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	105
BtsI	GCAGTG	2 cut(s)	267, 427
BtsIMutI	CAGTG	4 cut(s)	59, 267, 300, 427
Cac8I	GCNNGC	3 cut(s)	88, 277, 398
CaiI	CAGNNNCTG	1 cut(s)	464
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	69
CseI	GACGC	2 cut(s)	14, 251
Csp6I	GTAC	2 cut(s)	119, 226
CspAI	ACCGGT	1 cut(s)	170
CviJI	RGCY	9 cut(s)	29, 71, 157, 238, 275, 279, 344, 366, 391
CviKI_1	RGCY	9 cut(s)	29, 71, 157, 238, 275, 279, 344, 366, 391
CviQI	GTAC	2 cut(s)	119, 226
DpnI	GATC	3 cut(s)	99, 290, 308
DpnII	GATC	3 cut(s)	97, 288, 306
Eco31I	GGTCTC	2 cut(s)	242, 473
FaiI	YATR	5 cut(s)	136, 213, 218, 260, 416
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FauI	CCCGC	2 cut(s)	95, 133
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	49, 155, 273
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	49, 155, 273
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	3 cut(s)	49, 155, 273
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	2 cut(s)	171, 194
HgaI	GACGC	2 cut(s)	14, 251
HhaI	GCGC	1 cut(s)	451
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HinfI	GANTC	3 cut(s)	18, 184, 355
HpaII	CCGG	2 cut(s)	171, 194
HphI	GGTGA	5 cut(s)	92, 160, 256, 313, 329
Hpy166II	GTNNAC	3 cut(s)	136, 256, 442
Hpy188I	TCNGA	2 cut(s)	23, 205
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	3 cut(s)	136, 256, 442
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	3 cut(s)	253, 295, 466
HpyCH4IV	ACGT	2 cut(s)	81, 132
HpyCH4V	TGCA	2 cut(s)	48, 154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 426
HpySE526I	ACGT	2 cut(s)	81, 132
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	3 cut(s)	97, 288, 306
LpnPI	CCDG	8 cut(s)	145, 184, 207, 252, 284, 293, 298, 471
Lsp1109I	GCAGC	2 cut(s)	60, 166
LweI	GCATC	3 cut(s)	141, 196, 310
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	2 cut(s)	81, 132
MaeIII	GTNAC	3 cut(s)	166, 262, 460
MalI	GATC	3 cut(s)	99, 290, 308
MboI	GATC	3 cut(s)	97, 288, 306
MboII	GAAGA	3 cut(s)	27, 316, 343
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	430
MnlI	CCTC	6 cut(s)	113, 119, 198, 334, 380, 399
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	64
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	2 cut(s)	171, 194
MvnI	CGCG	2 cut(s)	245, 451
MwoI	GCNNNNNNNGC	2 cut(s)	397, 426
NdeII	GATC	3 cut(s)	97, 288, 306
NheI	GCTAGC	1 cut(s)	275
NmuCI	GTSAC	2 cut(s)	166, 262
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 249
PfeI	GAWTC	3 cut(s)	18, 184, 355
Pfl23II	CGTACG	1 cut(s)	118
PflFI	GACNNNGTC	2 cut(s)	80, 260
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	50, 156, 274
PspLI	CGTACG	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	306
PsyI	GACNNNGTC	2 cut(s)	80, 260
RsaI	GTAC	2 cut(s)	120, 227
RsaNI	GTAC	2 cut(s)	119, 226
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	49, 155, 273
Sau3AI	GATC	3 cut(s)	97, 288, 306
Sau96I	GGNCC	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	7 cut(s)	31, 84, 105, 135, 159, 368, 485
SfaNI	GCATC	3 cut(s)	141, 196, 310
SfcI	CTRYAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	361, 401
SmoI	CTYRAG	2 cut(s)	361, 401
Sse9I	AATT	1 cut(s)	430
SsiI	CCGC	4 cut(s)	88, 126, 245, 272
SspMI	CTAG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	253, 295, 466
TaiI	ACGT	2 cut(s)	84, 135
TaqI	TCGA	2 cut(s)	75, 339
TasI	AATT	1 cut(s)	430
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	3 cut(s)	18, 184, 355
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	4 cut(s)	66, 274, 300, 427
TseFI	GTSAC	2 cut(s)	166, 262
TseI	GCWGC	2 cut(s)	48, 154
Tsp45I	GTSAC	2 cut(s)	166, 262
TspDTI	ATGAA	1 cut(s)	233
TspRI	CASTG	4 cut(s)	66, 274, 300, 427
Tth111I	GACNNNGTC	2 cut(s)	80, 260
Vha464I	CTTAAG	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.