AT3G17300

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013495
Physical Location & Seq
Forward (+)
5907212 .. 5909003
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17300.2

Sequence Viewer

Length: 276 bp
ATGCCGTCTCTGCAAACTTCTCTGCCTCCTGAACTCGCTAACAATGTGGTTAGGTTGTACCGAGAATGTCTTCGTAGAGCTAAATTTATTGGTAAGCAGCAACACAACACTGAGCTAGTGGTTGGTATGGTGAGGCAACAATTTAAGAAACACATGAATGAGACAGACCCTGAGAAGATTCAGAAGCTTAAAGATGATGCTGCTCGGGGACTCATCAATCACATGTTGTTTGAGTCAGCGAAGCTGACAGGAGGCAAGGTTAGCCAGAGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

91

Amino Acids

10.43

Weight (kDa)

10.0

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 24 - 52 6.2e-06 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17300 AT3G17300 AT3G17300
fragaria_vesca FvH4_4g21000
malus_domestica MD16G1140400.v1.1
prunus_persica Prupe.1G110000_v2.0.a1 Prupe.1G110000_v2.0.a1
pyrus_communis pycom13g12610 pycom16g12460
rosa_chinensis RchiOBHm_Chr4g0426541
rosa_multiflora Rmu_sc0001821.1_g000006
rosa_roxburghii Rroxscaffold_5G00368550
rosa_rugosa Rorug04G0212700
rosa_samantha Rh4AG268300 Rh4BG274600 Rh4CG289000 Rh4DG271400
rosa_wichuraiana Rw4G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 264
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 222
AluBI AGCT 4 cut(s) 80, 115, 187, 244
AluI AGCT 4 cut(s) 80, 115, 187, 244
Alw26I GTCTC 2 cut(s) 12, 155
AlwI GGATC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 97, 200
ApoI RAATTY 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 109, 187
BcoDI GTCTC 2 cut(s) 12, 155
BfaI CTAG 1 cut(s) 116
BisI GCNGC 2 cut(s) 98, 201
BlsI GCNGC 2 cut(s) 99, 202
BmeT110I CYCGRG 1 cut(s) 204
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
BseMII CTCAG 2 cut(s) 102, 162
BseXI GCAGC 2 cut(s) 109, 187
BsiHKCI CYCGRG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 12, 155
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 204
Bsp143I GATC 1 cut(s) 269
BspCNI CTCAG 2 cut(s) 103, 163
BspPI GGATC 1 cut(s) 264
BssMI GATC 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 111, 171
BstKTI GATC 1 cut(s) 272
BstMAI GTCTC 2 cut(s) 12, 155
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 10, 261
BstNSI RCATGY 1 cut(s) 226
BstV1I GCAGC 2 cut(s) 109, 187
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 108
CaiI CAGNNNCTG 1 cut(s) 170
Csp6I GTAC 1 cut(s) 58
CviAII CATG 2 cut(s) 154, 223
CviJI RGCY 5 cut(s) 80, 115, 187, 244, 264
CviKI_1 RGCY 5 cut(s) 80, 115, 187, 244, 264
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 2 cut(s) 111, 171
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 2 cut(s) 157, 226
FaiI YATR 3 cut(s) 128, 155, 224
FaqI GGGAC 1 cut(s) 222
FatI CATG 2 cut(s) 153, 222
Fnu4HI GCNGC 2 cut(s) 98, 201
Fsp4HI GCNGC 2 cut(s) 98, 201
FspBI CTAG 1 cut(s) 116
GluI GCNGC 2 cut(s) 98, 201
Hin1II CATG 2 cut(s) 157, 226
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 3 cut(s) 178, 210, 233
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 29, 273
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 261
HpyF3I CTNAG 2 cut(s) 111, 171
Hsp92II CATG 2 cut(s) 157, 226
Kzo9I GATC 1 cut(s) 269
LpnPI CCDG 3 cut(s) 42, 183, 234
Lsp1109I GCAGC 2 cut(s) 109, 187
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 116
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 2 cut(s) 62, 187
MflI RGATCY 1 cut(s) 269
MluCI AATT 2 cut(s) 83, 140
MlyI GAGTC 2 cut(s) 204, 242
MnlI CCTC 3 cut(s) 36, 126, 245
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 2 cut(s) 144, 189
MslI CAYNNNNRTG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 10, 261
NdeII GATC 1 cut(s) 269
NlaIII CATG 2 cut(s) 157, 226
NspI RCATGY 1 cut(s) 226
PciI ACATGT 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 99, 202
PleI GAGTC 2 cut(s) 204, 241
PpsI GAGTC 2 cut(s) 204, 241
PscI ACATGT 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 2 cut(s) 144, 189
SatI GCNGC 2 cut(s) 98, 201
Sau3AI GATC 1 cut(s) 269
SchI GAGTC 2 cut(s) 204, 242
SetI ASST 6 cut(s) 56, 82, 117, 189, 246, 261
SfaNI GCATC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 2 cut(s) 83, 140
SspMI CTAG 1 cut(s) 116
TasI AATT 2 cut(s) 83, 140
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 144, 189
Tru9I TTAA 2 cut(s) 144, 189
TscAI CASTG 1 cut(s) 115
TseI GCWGC 2 cut(s) 97, 200
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 1 cut(s) 115
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.