Rh4AG268300

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013495
Physical Location & Seq
Forward (+)
58517717 .. 58519323
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG268300.1

Sequence Viewer

Length: 273 bp
ATGCCGTCTCTGCAAACCGCCTTGCCTCCTGAGCTCGCTAACAATGTGATCAGACTTTACCGTGAGTGTATTCGGAGAGCTAAATATGTCGGTCATCGGCAACACAATACACAACTTGTTGTCGACATGGTGCGGCAGCAGTTCAAAAAAAATATGCATGAGACCGATCCAGATAAGATTCAAAAGTTCAAGGATGACGCTGCAAGGGGACTTATAAATCACATACTTTTCGAGTCGGAGAAGATGTCTGGTCGTAAGTTCAGCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

90

Amino Acids

10.58

Weight (kDa)

9.93

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 16 - 69 2.8e-10 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17300 AT3G17300 AT3G17300
fragaria_vesca FvH4_4g21000
malus_domestica MD16G1140400.v1.1
prunus_persica Prupe.1G110000_v2.0.a1 Prupe.1G110000_v2.0.a1
pyrus_communis pycom13g12610 pycom16g12460
rosa_chinensis RchiOBHm_Chr4g0426541
rosa_multiflora Rmu_sc0001821.1_g000006
rosa_roxburghii Rroxscaffold_5G00368550
rosa_rugosa Rorug04G0212700
rosa_samantha Rh4AG268300 Rh4BG274600 Rh4CG289000 Rh4DG271400
rosa_wichuraiana Rw4G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AccI GTMKAC 1 cut(s) 123
AciI CCGC 2 cut(s) 18, 133
AclWI GGATC 1 cut(s) 161
AgsI TTSAA 3 cut(s) 145, 182, 190
AluBI AGCT 3 cut(s) 34, 80, 270
AluI AGCT 3 cut(s) 34, 80, 270
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 12, 155
AlwI GGATC 1 cut(s) 161
ApeKI GCWGC 2 cut(s) 136, 200
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 148, 187
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 12, 155
BfaI CTAG 1 cut(s) 271
BisI GCNGC 3 cut(s) 134, 137, 201
BlsI GCNGC 3 cut(s) 135, 138, 202
Bpu10I CCTNAGC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
BseGI GGATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 148, 187
BsiHKAI GWGCWC 1 cut(s) 36
BslFI GGGAC 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 12, 155
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 222
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 48, 166
BspACI CCGC 2 cut(s) 18, 133
BspCNI CTCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 155
BssMI GATC 2 cut(s) 48, 166
Bst4CI ACNGT 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 2 cut(s) 51, 169
BstMAI GTCTC 2 cut(s) 12, 155
BstMBI GATC 2 cut(s) 48, 166
BstMWI GCNNNNNNNGC 2 cut(s) 10, 31
BstV1I GCAGC 2 cut(s) 148, 187
BtsCI GGATG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 36
CseI GACGC 1 cut(s) 206
CviAII CATG 2 cut(s) 127, 158
CviJI RGCY 3 cut(s) 34, 80, 270
CviKI_1 RGCY 3 cut(s) 34, 80, 270
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 50, 168
DpnII GATC 2 cut(s) 48, 166
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 2 cut(s) 130, 161
FaiI YATR 6 cut(s) 87, 128, 155, 159, 215, 224
FaqI GGGAC 1 cut(s) 222
FatI CATG 2 cut(s) 126, 157
FbaI TGATCA 1 cut(s) 48
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 134, 137, 201
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 3 cut(s) 134, 137, 201
FspBI CTAG 1 cut(s) 271
GluI GCNGC 3 cut(s) 134, 137, 201
HgaI GACGC 1 cut(s) 206
Hin1II CATG 2 cut(s) 130, 161
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 2 cut(s) 178, 233
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 53, 75, 238
Hpy188III TCNNGA 2 cut(s) 29, 170
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 3 cut(s) 13, 157, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 31
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 2 cut(s) 130, 161
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 2 cut(s) 48, 166
LpnPI CCDG 3 cut(s) 42, 183, 234
Lsp1109I GCAGC 2 cut(s) 148, 187
MaeI CTAG 1 cut(s) 271
MalI GATC 2 cut(s) 50, 168
MboI GATC 2 cut(s) 48, 166
MboII GAAGA 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 10, 31
NdeII GATC 2 cut(s) 48, 166
NlaIII CATG 2 cut(s) 130, 161
NsiI ATGCAT 1 cut(s) 159
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 135, 138, 202
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PsiI TTATAA 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 36
SacI GAGCTC 1 cut(s) 36
SalI GTCGAC 1 cut(s) 122
SatI GCNGC 3 cut(s) 134, 137, 201
Sau3AI GATC 2 cut(s) 48, 166
SchI GAGTC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 36
SetI ASST 3 cut(s) 36, 82, 272
SsiI CCGC 2 cut(s) 18, 133
SspMI CTAG 1 cut(s) 271
SstI GAGCTC 1 cut(s) 36
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 123, 231
TaqII GACCGA 2 cut(s) 80, 179
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 1 cut(s) 178
TseI GCWGC 2 cut(s) 136, 200
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 271
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.