MD16G1140400.v1.1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013495
Physical Location & Seq
Reverse (-)
10796708 .. 10798310
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1140400.v1.1.491

Sequence Viewer

Length: 276 bp
ATGCCGTCCCTGCAAACCGCATTGCCTCCTGAACTTGCCAACAACGTGATCAGACTTTACCGCGAGTGTCTTCGGAGAGCTAAATATGTTGGTCATCGGCAACACAATACAGAACTTGTCGTTGATATGGTGCGGCGGGAATTCAAAAAGCATAAGCATGAGACAGACCCAGAAAAGATTCAAACGTTGAAGGATAACGCGGCGAGGGGACTCATAAACCATATACTGTTTGAGTCTGAGAAGATGTCCGGTCGTAAGTTCAGCAGCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

92

Amino Acids

10.67

Weight (kDa)

9.93

Isoelectric Point (pI)

71.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 16 - 65 2.5e-11 Complex 1 protein (LYR family)
Complex1_LYR_2 PF13233 16 - 63 5.9e-06 Complex1_LYR-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17300 AT3G17300 AT3G17300
fragaria_vesca FvH4_4g21000
malus_domestica MD16G1140400.v1.1
prunus_persica Prupe.1G110000_v2.0.a1 Prupe.1G110000_v2.0.a1
pyrus_communis pycom13g12610 pycom16g12460
rosa_chinensis RchiOBHm_Chr4g0426541
rosa_multiflora Rmu_sc0001821.1_g000006
rosa_roxburghii Rroxscaffold_5G00368550
rosa_rugosa Rorug04G0212700
rosa_samantha Rh4AG268300 Rh4BG274600 Rh4CG289000 Rh4DG271400
rosa_wichuraiana Rw4G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 63, 200
AciI CCGC 5 cut(s) 18, 61, 133, 136, 200
AclI AACGTT 1 cut(s) 185
AcsI RAATTY 1 cut(s) 140
AgsI TTSAA 3 cut(s) 145, 182, 190
AluBI AGCT 2 cut(s) 80, 273
AluI AGCT 2 cut(s) 80, 273
Alw26I GTCTC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 62
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 274
BisI GCNGC 3 cut(s) 134, 201, 265
BlsI GCNGC 3 cut(s) 135, 202, 266
BpiI GAAGAC 1 cut(s) 62
Bpu10I CCTNAGC 3 cut(s) 1866, 4353, 7352
BsaWI WCCGGW 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 228
Bsh1236I CGCG 2 cut(s) 63, 200
Bsh1285I CGRYCG 1 cut(s) 253
BsiEI CGRYCG 1 cut(s) 253
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 5 cut(s) 18, 61, 133, 136, 200
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 2 cut(s) 63, 200
BsrDI GCAATG 1 cut(s) 20
BssMI GATC 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 237
BstFNI CGCG 2 cut(s) 63, 200
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 48
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 10, 270
BstUI CGCG 2 cut(s) 63, 200
BstV2I GAAGAC 1 cut(s) 62
CviAII CATG 1 cut(s) 158
CviJI RGCY 2 cut(s) 80, 273
CviKI_1 RGCY 2 cut(s) 80, 273
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 140
FaeI CATG 1 cut(s) 161
FaiI YATR 7 cut(s) 87, 128, 153, 159, 215, 222, 224
FaqI GGGAC 1 cut(s) 222
FatI CATG 1 cut(s) 157
FauI CCCGC 1 cut(s) 129
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 134, 201, 265
Fsp4HI GCNGC 3 cut(s) 134, 201, 265
FspBI CTAG 1 cut(s) 274
GluI GCNGC 3 cut(s) 134, 201, 265
HapII CCGG 1 cut(s) 249
Hin1II CATG 1 cut(s) 161
HinfI GANTC 3 cut(s) 178, 210, 233
HpaII CCGG 1 cut(s) 249
Hpy188I TCNGA 3 cut(s) 53, 75, 238
Hpy188III TCNNGA 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 2 cut(s) 45, 185
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 270
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 2 cut(s) 45, 185
Hsp92II CATG 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 1 cut(s) 48
LpnPI CCDG 4 cut(s) 23, 42, 183, 262
MaeI CTAG 1 cut(s) 274
MaeII ACGT 2 cut(s) 45, 185
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 2 cut(s) 62, 253
MluCI AATT 1 cut(s) 140
MlyI GAGTC 2 cut(s) 204, 242
MnlI CCTC 2 cut(s) 36, 198
MroXI GAANNNNTTC 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 1 cut(s) 249
MvnI CGCG 2 cut(s) 63, 200
MwoI GCNNNNNNNGC 2 cut(s) 10, 270
NdeII GATC 1 cut(s) 48
NlaIII CATG 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 135, 202, 266
PleI GAGTC 2 cut(s) 204, 241
PpsI GAGTC 2 cut(s) 204, 241
Psp1406I AACGTT 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 156
SatI GCNGC 3 cut(s) 134, 201, 265
Sau3AI GATC 1 cut(s) 48
SchI GAGTC 2 cut(s) 204, 242
SetI ASST 4 cut(s) 48, 82, 188, 275
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 1 cut(s) 140
SsiI CCGC 5 cut(s) 18, 61, 133, 136, 200
SspMI CTAG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 2 cut(s) 48, 188
TasI AATT 1 cut(s) 140
TauI GCSGC 2 cut(s) 136, 203
TfiI GAWTC 1 cut(s) 178
TseI GCWGC 1 cut(s) 264
XapI RAATTY 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.