Prupe.1G110000_v2.0.a1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013495
Physical Location & Seq
Reverse (-)
8775715 .. 8778027
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G110000.1

Sequence Viewer

Length: 273 bp
ATGCCGTCTCTGCAAACCGCATTGCCTCCTGAGCTCGCGAATAATGTGATCAGACTTTACCGCGAGTGTCTTCGAAGAGCTAAATATGTTGGTCATCGGCAACACAATACGGAACTTGTGGTTGATATGGTGCGGCAGCAGTTCAAGAAACATATGCTTGAGACAGATCCAGAGAAGATTCAAAAGTTGAAGGATGATGCCGCAAGGGGACTTATAAATCATATACTATTCGAGTCCGAGAGGCTGTCTGGTCGTAAATTCAGCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

91

Amino Acids

10.53

Weight (kDa)

9.72

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17300 AT3G17300 AT3G17300
fragaria_vesca FvH4_4g21000
malus_domestica MD16G1140400.v1.1
prunus_persica Prupe.1G110000_v2.0.a1 Prupe.1G110000_v2.0.a1
pyrus_communis pycom13g12610 pycom16g12460
rosa_chinensis RchiOBHm_Chr4g0426541
rosa_multiflora Rmu_sc0001821.1_g000006
rosa_roxburghii Rroxscaffold_5G00368550
rosa_rugosa Rorug04G0212700
rosa_samantha Rh4AG268300 Rh4BG274600 Rh4CG289000 Rh4DG271400
rosa_wichuraiana Rw4G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AccII CGCG 2 cut(s) 38, 63
AciI CCGC 4 cut(s) 18, 61, 133, 201
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 257
AgsI TTSAA 3 cut(s) 145, 182, 190
AluBI AGCT 3 cut(s) 34, 80, 267
AluI AGCT 3 cut(s) 34, 80, 267
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 12, 155
AlwI GGATC 1 cut(s) 161
ApeKI GCWGC 2 cut(s) 136, 264
ApoI RAATTY 1 cut(s) 257
AsuII TTCGAA 1 cut(s) 73
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 148
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 12, 155
BisI GCNGC 4 cut(s) 134, 137, 201, 265
BlsI GCNGC 4 cut(s) 135, 138, 202, 266
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 20
BseGI GGATG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 2 cut(s) 38, 63
BsiHKAI GWGCWC 1 cut(s) 36
BslFI GGGAC 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 12, 155
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 222
Bsp119I TTCGAA 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 48, 166
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 4 cut(s) 18, 61, 133, 201
BspCNI CTCAG 1 cut(s) 22
BspFNI CGCG 2 cut(s) 38, 63
BspPI GGATC 1 cut(s) 161
BspQI GCTCTTC 1 cut(s) 70
BspT104I TTCGAA 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 20
BssMI GATC 2 cut(s) 48, 166
Bst6I CTCTTC 1 cut(s) 70
BstBI TTCGAA 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 2 cut(s) 38, 63
BstKTI GATC 2 cut(s) 51, 169
BstMAI GTCTC 2 cut(s) 12, 155
BstMBI GATC 2 cut(s) 48, 166
BstMWI GCNNNNNNNGC 2 cut(s) 10, 31
BstUI CGCG 2 cut(s) 38, 63
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BtsCI GGATG 1 cut(s) 199
BtuMI TCGCGA 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 36
CviJI RGCY 4 cut(s) 34, 80, 244, 267
CviKI_1 RGCY 4 cut(s) 34, 80, 244, 267
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 50, 168
DpnII GATC 2 cut(s) 48, 166
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 12
FaiI YATR 7 cut(s) 87, 128, 153, 155, 215, 222, 224
FaqI GGGAC 1 cut(s) 222
FauNDI CATATG 1 cut(s) 153
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 4 cut(s) 134, 137, 201, 265
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 4 cut(s) 134, 137, 201, 265
GluI GCNGC 4 cut(s) 134, 137, 201, 265
HinfI GANTC 2 cut(s) 178, 233
Hpy188I TCNGA 2 cut(s) 53, 238
Hpy188III TCNNGA 5 cut(s) 29, 37, 145, 170, 270
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 31
HpyF3I CTNAG 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 2 cut(s) 48, 166
LguI GCTCTTC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 42, 183, 234
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 187
MalI GATC 2 cut(s) 50, 168
MboI GATC 2 cut(s) 48, 166
MboII GAAGA 3 cut(s) 62, 87, 187
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 257
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 2 cut(s) 36, 234
MvnI CGCG 2 cut(s) 38, 63
MwoI GCNNNNNNNGC 2 cut(s) 10, 31
NdeI CATATG 1 cut(s) 153
NdeII GATC 2 cut(s) 48, 166
NruI TCGCGA 1 cut(s) 38
NspV TTCGAA 1 cut(s) 73
PciSI GCTCTTC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 4 cut(s) 135, 138, 202, 266
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PsiI TTATAA 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 166
RruI TCGCGA 1 cut(s) 38
SacI GAGCTC 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 70
SatI GCNGC 4 cut(s) 134, 137, 201, 265
Sau3AI GATC 2 cut(s) 48, 166
SchI GAGTC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 36
SetI ASST 3 cut(s) 36, 82, 269
SfaNI GCATC 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 257
SsiI CCGC 4 cut(s) 18, 61, 133, 201
SstI GAGCTC 1 cut(s) 36
TaqI TCGA 2 cut(s) 73, 231
TasI AATT 1 cut(s) 257
TauI GCSGC 2 cut(s) 136, 203
TfiI GAWTC 1 cut(s) 178
TseI GCWGC 2 cut(s) 136, 264
TspGWI ACGGA 1 cut(s) 125
XapI RAATTY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.