FvH4_4g21000

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013495
Physical Location & Seq
Forward (+)
24166748 .. 24168364
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21000.t1

Sequence Viewer

Length: 393 bp
ATGAGGAAGGGGGACGATTTCTGGAACCGAAAACATCAGACTGAAGAAATACCCAAGTCACCACTCCGCCTGCCGCCACCACCCACTCCGATTCGATTCGGCAAACAACTGAAAGAAAATATGCCGTCTCTGCAAACCGCCTTGCCTCCTGAGCTCGCTAACAATGTCATCAGACTTTACCGTGAGTGCATTCGAAGAGCTAAATACGTCGGCCATCGGCAACACAATACACAACTTGTTGTTGATATGGTGCGGCAGCAGTTCAAAAAGAACATGAATGAGACAGACCCGGATAAGATTCAACAGTGCAAGGATGATGCTGCTAGGGGACTTATAAATCACATACTTTTCGAGTCGGAGAAGATGTCTGGTCGTAAATTCAGCAAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

131

Amino Acids

15.29

Weight (kDa)

9.95

Isoelectric Point (pI)

57.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 56 - 109 1.1e-09 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17300 AT3G17300 AT3G17300
fragaria_vesca FvH4_4g21000
malus_domestica MD16G1140400.v1.1
prunus_persica Prupe.1G110000_v2.0.a1 Prupe.1G110000_v2.0.a1
pyrus_communis pycom13g12610 pycom16g12460
rosa_chinensis RchiOBHm_Chr4g0426541
rosa_multiflora Rmu_sc0001821.1_g000006
rosa_roxburghii Rroxscaffold_5G00368550
rosa_rugosa Rorug04G0212700
rosa_samantha Rh4AG268300 Rh4BG274600 Rh4CG289000 Rh4DG271400
rosa_wichuraiana Rw4G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AciI CCGC 4 cut(s) 67, 74, 138, 253
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 63
AgsI TTSAA 2 cut(s) 265, 302
AluBI AGCT 2 cut(s) 154, 200
AluI AGCT 2 cut(s) 154, 200
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 132, 275
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 256, 320
ApoI RAATTY 1 cut(s) 377
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 51
AsuII TTCGAA 1 cut(s) 193
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 268, 307
BccI CCATC 1 cut(s) 222
BceAI ACGGC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 132, 275
BfaI CTAG 2 cut(s) 324, 391
BisI GCNGC 4 cut(s) 74, 254, 257, 321
BlsI GCNGC 4 cut(s) 75, 255, 258, 322
Bme1390I CCNGG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 193
BpuMI CCSGG 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
BseGI GGATG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 268, 307
BshFI GGCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 2 cut(s) 26, 342
BsmAI GTCTC 2 cut(s) 132, 275
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 26, 342
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 156
BspACI CCGC 4 cut(s) 67, 74, 138, 253
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 190
BspT104I TTCGAA 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 182, 306
Bst6I CTCTTC 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 193
BstC8I GCNNGC 2 cut(s) 71, 156
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 319
BstMAI GTCTC 2 cut(s) 132, 275
BstMWI GCNNNNNNNGC 2 cut(s) 130, 151
BstSCI CCNGG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 268, 307
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 311
Cac8I GCNNGC 2 cut(s) 71, 156
CviAII CATG 1 cut(s) 274
CviJI RGCY 3 cut(s) 154, 200, 213
CviKI_1 RGCY 3 cut(s) 154, 200, 213
DdeI CTNAG 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 1 cut(s) 277
FaiI YATR 5 cut(s) 122, 248, 275, 335, 344
FaqI GGGAC 2 cut(s) 26, 342
FatI CATG 1 cut(s) 273
Fnu4HI GCNGC 4 cut(s) 74, 254, 257, 321
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 4 cut(s) 74, 254, 257, 321
FspBI CTAG 2 cut(s) 324, 391
GluI GCNGC 4 cut(s) 74, 254, 257, 321
HaeIII GGCC 1 cut(s) 213
HapII CCGG 1 cut(s) 290
Hin1II CATG 1 cut(s) 277
HinfI GANTC 4 cut(s) 91, 96, 298, 353
HpaII CCGG 1 cut(s) 290
HphI GGTGA 1 cut(s) 51
Hpy188I TCNGA 4 cut(s) 39, 90, 173, 358
Hpy188III TCNNGA 2 cut(s) 22, 149
Hpy99I CGWCG 1 cut(s) 212
HpyCH4III ACNGT 2 cut(s) 182, 306
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 133, 189, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 151
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 1 cut(s) 277
LguI GCTCTTC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 7, 83, 162, 303, 354
Lsp1109I GCAGC 2 cut(s) 268, 307
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 324, 391
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 57
MboII GAAGA 3 cut(s) 56, 207, 373
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 1 cut(s) 377
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 1 cut(s) 156
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 130, 151
NciI CCSGG 1 cut(s) 290
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 57
NspV TTCGAA 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 190
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 3 cut(s) 91, 96, 298
PkrI GCNGC 4 cut(s) 75, 255, 258, 322
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PsiI TTATAA 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 26
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 190
SatI GCNGC 4 cut(s) 74, 254, 257, 321
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 156
SetI ASST 4 cut(s) 156, 202, 210, 392
SfaNI GCATC 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 193
Sse9I AATT 1 cut(s) 377
SsiI CCGC 4 cut(s) 67, 74, 138, 253
SspMI CTAG 2 cut(s) 324, 391
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 182, 306
TaiI ACGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 94, 193, 351
TasI AATT 1 cut(s) 377
TauI GCSGC 2 cut(s) 76, 256
TfiI GAWTC 3 cut(s) 91, 96, 298
TscAI CASTG 1 cut(s) 311
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 2 cut(s) 256, 320
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 1 cut(s) 311
XapI RAATTY 1 cut(s) 377
XspI CTAG 2 cut(s) 324, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.