pycom13g12610

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0013495
Physical Location & Seq
Reverse (-)
8771312 .. 8771743
432 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g12610.1

Sequence Viewer

Length: 186 bp
ATGATGCAGCAACACAATACAGAACTTGTCGTTGATATGGTGCGGGGGGAATTCAAAAAACATAAGCATGAGACGGACCCAGAAAAGATTCAAACTTTGAAGGATGACGCGGCGAGGGGACTCATAAACCATATACTGTTCGAGTCCGAGAAGATGTCCGGCCGAAAGTTCAGCAGCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

62

Amino Acids

7.11

Weight (kDa)

8.11

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 7 - 39 2.3e-06 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17300 AT3G17300 AT3G17300
fragaria_vesca FvH4_4g21000
malus_domestica MD16G1140400.v1.1
prunus_persica Prupe.1G110000_v2.0.a1 Prupe.1G110000_v2.0.a1
pyrus_communis pycom13g12610 pycom16g12460
rosa_chinensis RchiOBHm_Chr4g0426541
rosa_multiflora Rmu_sc0001821.1_g000006
rosa_roxburghii Rroxscaffold_5G00368550
rosa_rugosa Rorug04G0212700
rosa_samantha Rh4AG268300 Rh4BG274600 Rh4CG289000 Rh4DG271400
rosa_wichuraiana Rw4G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 110
AciI CCGC 2 cut(s) 43, 110
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 1 cut(s) 50
AgsI TTSAA 3 cut(s) 55, 92, 100
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 65
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 7, 174
ApoI RAATTY 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 184
BisI GCNGC 3 cut(s) 8, 111, 175
BlsI GCNGC 3 cut(s) 9, 112, 176
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 78
BseGI GGATG 1 cut(s) 109
BseX3I CGGCCG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 162
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 65
BsmBI CGTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 1 cut(s) 162
BspACI CCGC 2 cut(s) 43, 110
BspANI GGCC 1 cut(s) 162
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 138
BstF5I GGATG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 65
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 19
BstZI CGGCCG 1 cut(s) 160
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 1 cut(s) 116
CviAII CATG 1 cut(s) 68
CviJI RGCY 2 cut(s) 162, 183
CviKI_1 RGCY 2 cut(s) 162, 183
EaeI YGGCCR 1 cut(s) 160
EagI CGGCCG 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 50
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 1 cut(s) 71
FaiI YATR 6 cut(s) 38, 63, 69, 125, 132, 134
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 67
FauI CCCGC 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 8, 111, 175
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 8, 111, 175
FspBI CTAG 1 cut(s) 184
GluI GCNGC 3 cut(s) 8, 111, 175
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 71
HinfI GANTC 3 cut(s) 88, 120, 143
HpaII CCGG 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
Hsp92II CATG 1 cut(s) 71
LpnPI CCDG 2 cut(s) 93, 172
Lsp1109I GCAGC 1 cut(s) 19
MaeI CTAG 1 cut(s) 184
MboII GAAGA 1 cut(s) 163
MluCI AATT 1 cut(s) 50
MlyI GAGTC 2 cut(s) 114, 152
MnlI CCTC 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 66
MspI CCGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 180
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 3 cut(s) 9, 112, 176
PleI GAGTC 2 cut(s) 114, 151
PpsI GAGTC 2 cut(s) 114, 151
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 66
SatI GCNGC 3 cut(s) 8, 111, 175
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 2 cut(s) 114, 152
SetI ASST 1 cut(s) 185
SgeI CNNG 9 cut(s) 38, 56, 80, 92, 121, 126, 154, 160, 171
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 66
Sse9I AATT 1 cut(s) 50
SsiI CCGC 2 cut(s) 43, 110
SspMI CTAG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 50
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 88
TseI GCWGC 2 cut(s) 7, 174
TspGWI ACGGA 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.