AT3G17470

Region found in RelA / SpoT proteins

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
5979814 .. 5982145
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17470.1

Sequence Viewer

Length: 1752 bp
ATGTCTGTGATTCGTCCTTCTCCGATTCCAATTCCGAGATGCAGATCTCAGGTACTGCATCGTCGTCTTTATTCGATTCAATTGATTCAGCGACGACGTCGACGGTGGAATCCGAGGTCGGAGGTGGAGGATACTGCGATTGAATCGACGGCTCGGTCTCCGGAGGCAGCGGGAGGGAAAATGGTGGTGGAGCTTGTTGGAGCTTTCAACGAAGTAACGGAGAGGATGAATTCGGTTTGGTTGTCGACGTCTTCGTCTAGGTTACTCTTTAAAGCTCTCAAGCTCTCGATTCCGATTTTACAGTCTCTTCCTCTTGCCTCTGATGGTCGCTCTCCTCTTTCTAAGGCTCTCTCACTCTCTATCATTCTCGCAGATCTCCAGATGGATGCAGAAGTTATCTCGGCGAGTATATTGAGTGAGGTGGTGGACGCGAATGCGATATCTATATATGAAGTTAGAGACCATATTGGTACTGGAACTGCTCATCTGCTTCATGAGATTTTTCGTGTGAAGAATATTCCTTTTAAAGTTGATGTGTTAGACGATGAAACTGCTGCTTCATTGAGAAAGTTCTATTTAACCTACTATGACATCAGAGCTGTGATTATGGATTTGGTTTCAAAGCTTGATGAGATGAGGCATTTGGATCACTTGCCAAGGTATCGCCAGCAGATTCTCTCTCTTGAAGTGTTGAAGATTTATTCTCCTTTAGCTCATGCGGTGGGGGCTAATCACCTGTCACTTGAGCTCGAGGACATCTCTTTCCGTTATCTTTTTCCGTGTTCGTATATATACTTAGATTCATGGTTAAGAGGTCACGAGAACGGGTCTAAACCGTTGATAGACGTGTACAAAGAGCAGCTTCATCGGTCTTTGAAGGATGATTTGGTTTTGGCTGAAATGGTGAATGATGTATATATTAAAGGTCGGTATAAAAGTCGGTACAGCATGATGAAGAAGCTCCTAAGAGATGGGCGTAAACCGGAAGAAGTGAACGATGTGCTTGGTCTACGGGTCATATTAATGCCTAATTCTGTAGTAAACGATGTTGAAGTTGGCGAAAAAGCCTGTTACAGAACAAGTGAGATTATCCGGTCTTTGTGGAAGGAGATTCCGCATAGAACAAAAGACTACATTGCTAGGCCAAAGGAAAATGGGTATAGGAGTTTACACATGGCAGTTGATGTTAGCGACAGCGATCAGATAAGACCTTTGATGGAGATACAAATACGGACAATGGATATGGATGGATCCGCTAATGCTGGAACAGCATCACATTCTTTGTATAAAGGCGGTCTAACCGACCCAAAAGAGGCGAAGCGGCTTAAAGCGATAATGTTGGCAGCAGCGGATCTTGCAGCGATTCGTCTCAAAGATATCTCATCAAATAAACACCAAAGCTTCAAGACAACAACGAACCAGAGAGACAGAGTGTTTTGCCTTCTGGACAAAAACGGGGACGGAATGATCAGCATAGAGGAACTAATGGAAGTGATGGAAGAGCTTGGAGCTCCAGGTGAAGACGCAGAGGAGATGATGCAGCTTCTTGACTCTAACAGCGATGGATCTCTTAGTTCAGACGAATTCGATACGTTTCAGAAACAAGTAGAGTTCATGCGTAAATGGGAAGATAGAGATAACGAGTACAAGAGTCTTTTAGACGAGAAGCTTCATGATCTTCCACATCAAGATACCACAGGTTTGATACAGTTATACAATAAAGAGCTTGAGGATCGTCTCTCAACCCATTAA

Protein Analysis

583

Amino Acids

66.58

Weight (kDa)

5.99

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD_4 PF13328 105 - 242 7.5e-22 HD domain
RelA_SpoT PF04607 309 - 431 1.7e-31 Region found in RelA / SpoT proteins
EF-hand_1 PF00036 476 - 501 8.5e-06 EF hand domain
EF-hand_7 PF13499 477 - 529 4.4e-11 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012431)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 154, 253
AatII GACGTC 2 cut(s) 100, 251
AccI GTMKAC 3 cut(s) 100, 245, 1009
AccII CGCG 1 cut(s) 431
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 7 cut(s) 170, 719, 1115, 1254, 1293, 1321, 1349
AclWI GGATC 6 cut(s) 654, 1245, 1258, 1359, 1573, 1740
AcsI RAATTY 2 cut(s) 229, 1583
AcyI GRCGYC 2 cut(s) 97, 248
AfaI GTAC 5 cut(s) 54, 472, 851, 944, 1646
AfiI CCNNNNNNNGG 1 cut(s) 1312
AflIII ACRYGT 1 cut(s) 846
AgsI TTSAA 9 cut(s) 80, 143, 208, 621, 686, 694, 877, 1052, 1405
AjiI CACGTC 1 cut(s) 847
AjnI CCWGG 1 cut(s) 1513
AjuI GAANNNNNNNTTGG 2 cut(s) 869, 901
Alw21I GWGCWC 2 cut(s) 750, 1513
Alw26I GTCTC 6 cut(s) 162, 309, 453, 1373, 1419, 1742
AlwI GGATC 6 cut(s) 654, 1245, 1258, 1359, 1573, 1740
AlwNI CAGNNNCTG 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 749
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 1 cut(s) 1142
ApeKI GCWGC 7 cut(s) 167, 554, 859, 1343, 1346, 1358, 1540
ApoI RAATTY 2 cut(s) 229, 1583
AseI ATTAAT 1 cut(s) 1022
AsuHPI GGTGA 3 cut(s) 725, 916, 1529
AvaI CYCGRG 1 cut(s) 749
BamHI GGATCC 1 cut(s) 1250
BanII GRGCYC 2 cut(s) 750, 1513
BauI CACGAG 1 cut(s) 818
BbsI GAAGAC 2 cut(s) 243, 1527
Bbv12I GWGCWC 2 cut(s) 750, 1513
BbvI GCAGC 7 cut(s) 179, 541, 871, 1355, 1358, 1370, 1552
BccI CCATC 7 cut(s) 317, 376, 965, 1210, 1241, 1489, 1556
BceAI ACGGC 1 cut(s) 165
BcgI CGANNNNNNTGC 4 cut(s) 533, 567, 848, 882
BciT130I CCWGG 1 cut(s) 1515
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 1 cut(s) 1467
BcoDI GTCTC 6 cut(s) 162, 309, 453, 1373, 1419, 1742
BfaI CTAG 2 cut(s) 258, 1140
BfmI CTRYAG 1 cut(s) 1035
BfuI GTATCC 1 cut(s) 124
BglII AGATCT 2 cut(s) 44, 373
BisI GCNGC 8 cut(s) 168, 555, 860, 1322, 1344, 1347, 1359, 1541
BlsI GCNGC 8 cut(s) 169, 556, 861, 1323, 1345, 1348, 1360, 1542
Bme1390I CCNGG 1 cut(s) 1515
BmeT110I CYCGRG 1 cut(s) 749
BmgBI CACGTC 1 cut(s) 847
BmiI GGNNCC 1 cut(s) 1252
BmrFI CCNGG 1 cut(s) 1515
BmsI GCATC 5 cut(s) 29, 67, 376, 1280, 1527
BpiI GAAGAC 2 cut(s) 243, 1527
BplI GAGNNNNNCTC 2 cut(s) 743, 775
BpmI CTGGAG 2 cut(s) 362, 1497
BpuEI CTTGAG 3 cut(s) 263, 764, 1748
BsaBI GATNNNNATC 1 cut(s) 43
BsaHI GRCGYC 2 cut(s) 97, 248
BsaI GGTCTC 2 cut(s) 162, 453
BsaJI CCNNGG 2 cut(s) 113, 656
BsaWI WCCGGW 3 cut(s) 160, 982, 1092
Bsc4I CCNNNNNNNGG 1 cut(s) 1312
Bse1I ACTGG 1 cut(s) 478
Bse3DI GCAATG 1 cut(s) 1134
Bse8I GATNNNNATC 1 cut(s) 43
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 1 cut(s) 1515
BseDI CCNNGG 2 cut(s) 113, 656
BseGI GGATG 4 cut(s) 231, 391, 886, 1252
BseJI GATNNNNATC 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 1312
BseMI GCAATG 1 cut(s) 1134
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 2 cut(s) 324, 1544
BseXI GCAGC 7 cut(s) 179, 541, 871, 1355, 1358, 1370, 1552
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 1 cut(s) 1144
BsiHKAI GWGCWC 2 cut(s) 750, 1513
BsiHKCI CYCGRG 1 cut(s) 749
BsiSI CCGG 3 cut(s) 161, 983, 1093
BslFI GGGAC 1 cut(s) 1472
BslI CCNNNNNNNGG 1 cut(s) 1312
BsmAI GTCTC 6 cut(s) 162, 309, 453, 1373, 1419, 1742
BsmBI CGTCTC 2 cut(s) 1373, 1742
BsmFI GGGAC 1 cut(s) 1472
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 1 cut(s) 1144
Bso31I GGTCTC 2 cut(s) 162, 453
BsoBI CYCGRG 1 cut(s) 749
Bsp1286I GDGCHC 2 cut(s) 750, 1513
Bsp13I TCCGGA 1 cut(s) 160
Bsp1407I TGTACA 1 cut(s) 849
BspACI CCGC 7 cut(s) 170, 719, 1115, 1254, 1293, 1321, 1349
BspANI GGCC 1 cut(s) 1144
BspCNI CTCAG 1 cut(s) 61
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 431
BspHI TCATGA 2 cut(s) 493, 1672
BspLI GGNNCC 1 cut(s) 1252
BspPI GGATC 6 cut(s) 654, 1245, 1258, 1359, 1573, 1740
BspQI GCTCTTC 1 cut(s) 1494
BspTNI GGTCTC 2 cut(s) 162, 453
BsrDI GCAATG 1 cut(s) 1134
BsrGI TGTACA 1 cut(s) 849
BsrI ACTGG 1 cut(s) 478
BssECI CCNNGG 2 cut(s) 113, 656
BssNI GRCGYC 2 cut(s) 97, 248
BssSI CACGAG 1 cut(s) 818
BssT1I CCWWGG 1 cut(s) 656
Bst2BI CACGAG 1 cut(s) 818
Bst2UI CCWGG 1 cut(s) 1515
Bst4CI ACNGT 4 cut(s) 105, 303, 837, 1710
Bst6I CTCTTC 2 cut(s) 312, 1494
BstACI GRCGYC 2 cut(s) 97, 248
BstAUI TGTACA 1 cut(s) 849
BstC8I GCNNGC 1 cut(s) 668
BstDEI CTNAG 5 cut(s) 48, 342, 796, 965, 1571
BstF5I GGATG 4 cut(s) 231, 391, 886, 1252
BstFNI CGCG 1 cut(s) 431
BstMAI GTCTC 6 cut(s) 162, 309, 453, 1373, 1419, 1742
BstMWI GCNNNNNNNGC 3 cut(s) 725, 1268, 1355
BstNI CCWGG 1 cut(s) 1515
BstSCI CCNGG 1 cut(s) 1513
BstSFI CTRYAG 1 cut(s) 1035
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 7 cut(s) 179, 541, 871, 1355, 1358, 1370, 1552
BstV2I GAAGAC 2 cut(s) 243, 1527
BstX2I RGATCY 5 cut(s) 44, 373, 1250, 1351, 1565
BstYI RGATCY 5 cut(s) 44, 373, 1250, 1351, 1565
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 1144
BtgZI GCGATG 1 cut(s) 1575
BtrI CACGTC 1 cut(s) 847
BtsCI GGATG 4 cut(s) 231, 391, 886, 1252
Cac8I GCNNGC 1 cut(s) 668
CaiI CAGNNNCTG 1 cut(s) 55
CciI TCATGA 2 cut(s) 493, 1672
CseI GACGC 2 cut(s) 437, 1532
Csp6I GTAC 5 cut(s) 53, 471, 850, 943, 1645
CviAII CATG 7 cut(s) 494, 716, 804, 949, 1174, 1615, 1673
CviQI GTAC 5 cut(s) 53, 471, 850, 943, 1645
DdeI CTNAG 5 cut(s) 48, 342, 796, 965, 1571
DraI TTTAAA 2 cut(s) 271, 526
DrdI GACNNNNNNGTC 2 cut(s) 154, 253
DseDI GACNNNNNNGTC 2 cut(s) 154, 253
Eam1104I CTCTTC 2 cut(s) 312, 1494
EarI CTCTTC 2 cut(s) 312, 1494
Ecl136II GAGCTC 2 cut(s) 748, 1511
Eco130I CCWWGG 1 cut(s) 656
Eco24I GRGCYC 2 cut(s) 750, 1513
Eco31I GGTCTC 2 cut(s) 162, 453
Eco32I GATATC 2 cut(s) 441, 1378
Eco53kI GAGCTC 2 cut(s) 748, 1511
Eco88I CYCGRG 1 cut(s) 749
EcoICRI GAGCTC 2 cut(s) 748, 1511
EcoRI GAATTC 2 cut(s) 229, 1583
EcoRII CCWGG 1 cut(s) 1513
EcoRV GATATC 2 cut(s) 441, 1378
EcoT14I CCWWGG 1 cut(s) 656
EcoT38I GRGCYC 2 cut(s) 750, 1513
ErhI CCWWGG 1 cut(s) 656
Esp3I CGTCTC 2 cut(s) 1373, 1742
FaeI CATG 7 cut(s) 497, 719, 807, 952, 1177, 1618, 1676
FalI AAGNNNNNCTT 2 cut(s) 846, 878
FaqI GGGAC 1 cut(s) 1472
FatI CATG 7 cut(s) 493, 715, 803, 948, 1173, 1614, 1672
FauI CCCGC 1 cut(s) 163
FbaI TGATCA 1 cut(s) 1467
FblI GTMKAC 3 cut(s) 100, 245, 1009
Fnu4HI GCNGC 8 cut(s) 168, 555, 860, 1322, 1344, 1347, 1359, 1541
FokI GGATG 4 cut(s) 238, 398, 893, 1259
FriOI GRGCYC 2 cut(s) 750, 1513
Fsp4HI GCNGC 8 cut(s) 168, 555, 860, 1322, 1344, 1347, 1359, 1541
FspBI CTAG 2 cut(s) 258, 1140
GluI GCNGC 8 cut(s) 168, 555, 860, 1322, 1344, 1347, 1359, 1541
GsuI CTGGAG 2 cut(s) 362, 1497
HaeIII GGCC 1 cut(s) 1144
HapII CCGG 3 cut(s) 161, 983, 1093
HgaI GACGC 2 cut(s) 437, 1532
Hin1I GRCGYC 2 cut(s) 97, 248
Hin1II CATG 7 cut(s) 497, 719, 807, 952, 1177, 1618, 1676
HincII GTYRAC 2 cut(s) 101, 246
HindII GTYRAC 2 cut(s) 101, 246
HindIII AAGCTT 3 cut(s) 623, 1399, 1667
HpaII CCGG 3 cut(s) 161, 983, 1093
HphI GGTGA 3 cut(s) 725, 916, 1529
Hpy166II GTNNAC 9 cut(s) 101, 246, 427, 850, 980, 994, 1010, 1042, 1169
Hpy8I GTNNAC 9 cut(s) 101, 246, 427, 850, 980, 994, 1010, 1042, 1169
Hpy99I CGWCG 7 cut(s) 66, 96, 99, 102, 105, 151, 250
HpyAV CCTTC 4 cut(s) 27, 871, 1099, 1451
HpyCH4III ACNGT 4 cut(s) 105, 303, 837, 1710
HpyCH4IV ACGT 4 cut(s) 97, 248, 846, 1592
HpyCH4V TGCA 5 cut(s) 42, 58, 389, 1358, 1540
HpyF10VI GCNNNNNNNGC 3 cut(s) 725, 1268, 1355
HpyF3I CTNAG 5 cut(s) 48, 342, 796, 965, 1571
HpySE526I ACGT 4 cut(s) 97, 248, 846, 1592
Hsp92I GRCGYC 2 cut(s) 97, 248
Hsp92II CATG 7 cut(s) 497, 719, 807, 952, 1177, 1618, 1676
Kpn2I TCCGGA 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 1467
LguI GCTCTTC 1 cut(s) 1494
LmnI GCTCC 5 cut(s) 190, 200, 966, 1508, 1516
Lsp1109I GCAGC 7 cut(s) 179, 541, 871, 1355, 1358, 1370, 1552
LweI GCATC 5 cut(s) 29, 67, 376, 1280, 1527
MaeI CTAG 2 cut(s) 258, 1140
MaeII ACGT 4 cut(s) 97, 248, 846, 1592
MaeIII GTNAC 5 cut(s) 214, 261, 738, 815, 1070
MfeI CAATTG 1 cut(s) 80
MflI RGATCY 5 cut(s) 44, 373, 1250, 1351, 1565
MhlI GDGCHC 2 cut(s) 750, 1513
MluCI AATT 5 cut(s) 30, 80, 229, 1030, 1583
MlyI GAGTC 2 cut(s) 1544, 1660
MmeI TCCRAC 2 cut(s) 99, 178
MroI TCCGGA 1 cut(s) 160
MseI TTAA 8 cut(s) 270, 525, 578, 809, 921, 1022, 1326, 1750
MslI CAYNNNNRTG 1 cut(s) 1022
MspA1I CMGCKG 2 cut(s) 170, 1349
MspI CCGG 3 cut(s) 161, 983, 1093
MspR9I CCNGG 1 cut(s) 1515
MunI CAATTG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 1 cut(s) 1515
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 725, 1268, 1355
NlaIII CATG 7 cut(s) 497, 719, 807, 952, 1177, 1618, 1676
NlaIV GGNNCC 1 cut(s) 1252
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 2 cut(s) 738, 815
PaeR7I CTCGAG 1 cut(s) 749
PagI TCATGA 2 cut(s) 493, 1672
PciSI GCTCTTC 1 cut(s) 1494
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PctI GAATGC 1 cut(s) 439
PflFI GACNNNGTC 1 cut(s) 96
PkrI GCNGC 8 cut(s) 169, 556, 861, 1323, 1345, 1348, 1360, 1542
PleI GAGTC 2 cut(s) 1544, 1659
PpsI GAGTC 2 cut(s) 1544, 1659
PshBI ATTAAT 1 cut(s) 1022
Psp124BI GAGCTC 2 cut(s) 750, 1513
Psp6I CCWGG 1 cut(s) 1513
PspGI CCWGG 1 cut(s) 1513
PspN4I GGNNCC 1 cut(s) 1252
PspXI VCTCGAGB 1 cut(s) 749
PstNI CAGNNNCTG 1 cut(s) 55
PsuI RGATCY 5 cut(s) 44, 373, 1250, 1351, 1565
PsyI GACNNNGTC 1 cut(s) 96
RsaI GTAC 5 cut(s) 54, 472, 851, 944, 1646
RsaNI GTAC 5 cut(s) 53, 471, 850, 943, 1645
RseI CAYNNNNRTG 1 cut(s) 1022
SacI GAGCTC 2 cut(s) 750, 1513
SalI GTCGAC 2 cut(s) 99, 244
SapI GCTCTTC 1 cut(s) 1494
SaqAI TTAA 8 cut(s) 270, 525, 578, 809, 921, 1022, 1326, 1750
SatI GCNGC 8 cut(s) 168, 555, 860, 1322, 1344, 1347, 1359, 1541
SchI GAGTC 2 cut(s) 1544, 1660
ScrFI CCNGG 1 cut(s) 1515
SduI GDGCHC 2 cut(s) 750, 1513
SfaNI GCATC 5 cut(s) 29, 67, 376, 1280, 1527
SfcI CTRYAG 1 cut(s) 1035
Sfr274I CTCGAG 1 cut(s) 749
SgrDI CGTCGACG 1 cut(s) 99
SlaI CTCGAG 1 cut(s) 749
SmiMI CAYNNNNRTG 1 cut(s) 1022
SmlI CTYRAG 4 cut(s) 278, 743, 749, 1727
SmoI CTYRAG 4 cut(s) 278, 743, 749, 1727
Sse9I AATT 5 cut(s) 30, 80, 229, 1030, 1583
SsiI CCGC 7 cut(s) 170, 719, 1115, 1254, 1293, 1321, 1349
SspI AATATT 1 cut(s) 517
SspMI CTAG 2 cut(s) 258, 1140
SstI GAGCTC 2 cut(s) 750, 1513
StyD4I CCNGG 1 cut(s) 1513
StyI CCWWGG 1 cut(s) 656
TaaI ACNGT 4 cut(s) 105, 303, 837, 1710
TaiI ACGT 4 cut(s) 100, 251, 849, 1595
TaqI TCGA 7 cut(s) 74, 100, 146, 245, 287, 750, 1587
TaqII GACCGA 2 cut(s) 144, 858
TasI AATT 5 cut(s) 30, 80, 229, 1030, 1583
TatI WGTACW 2 cut(s) 849, 1644
TauI GCSGC 1 cut(s) 1324
Tru1I TTAA 8 cut(s) 270, 525, 578, 809, 921, 1022, 1326, 1750
Tru9I TTAA 8 cut(s) 270, 525, 578, 809, 921, 1022, 1326, 1750
TseFI GTSAC 2 cut(s) 738, 815
TseI GCWGC 7 cut(s) 167, 554, 859, 1343, 1346, 1358, 1540
Tsp45I GTSAC 2 cut(s) 738, 815
TspGWI ACGGA 5 cut(s) 233, 755, 768, 1246, 1476
Tth111I GACNNNGTC 1 cut(s) 96
VspI ATTAAT 1 cut(s) 1022
XapI RAATTY 2 cut(s) 229, 1583
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XhoI CTCGAG 1 cut(s) 749
XmiI GTMKAC 3 cut(s) 100, 245, 1009
XspI CTAG 2 cut(s) 258, 1140
ZraI GACGTC 2 cut(s) 98, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.