Region found in RelA / SpoT proteins
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17470 AT3G17470 AT3G17470 |
| fragaria_vesca | FvH4_4g21520 FvH4_4g21520 FvH4_4g21520 |
| malus_domestica | MD13G1139600.v1.1 |
| prunus_persica | Prupe.1G105100_v2.0.a1 |
| pyrus_communis | pycom13g12150 |
| rosa_chinensis | RchiOBHm_Chr4g0427541 |
| rosa_laevigata | RLG00000007228 |
| rosa_multiflora | Rmu_sc0009627.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00369190 |
| rosa_rugosa | Rorug04G0218400 |
| rosa_samantha | Rh4AG275000 Rh4BG280800 Rh4CG296100 Rh4DG278200 |
| rosa_wichuraiana | Rw4G023840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 154, 253 |
| AatII | GACGTC | 2 cut(s) | 100, 251 |
| AccI | GTMKAC | 3 cut(s) | 100, 245, 1009 |
| AccII | CGCG | 1 cut(s) | 431 |
| AccIII | TCCGGA | 1 cut(s) | 160 |
| AciI | CCGC | 7 cut(s) | 170, 719, 1115, 1254, 1293, 1321, 1349 |
| AclWI | GGATC | 6 cut(s) | 654, 1245, 1258, 1359, 1573, 1740 |
| AcsI | RAATTY | 2 cut(s) | 229, 1583 |
| AcyI | GRCGYC | 2 cut(s) | 97, 248 |
| AfaI | GTAC | 5 cut(s) | 54, 472, 851, 944, 1646 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1312 |
| AflIII | ACRYGT | 1 cut(s) | 846 |
| AgsI | TTSAA | 9 cut(s) | 80, 143, 208, 621, 686, 694, 877, 1052, 1405 |
| AjiI | CACGTC | 1 cut(s) | 847 |
| AjnI | CCWGG | 1 cut(s) | 1513 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 869, 901 |
| Alw21I | GWGCWC | 2 cut(s) | 750, 1513 |
| Alw26I | GTCTC | 6 cut(s) | 162, 309, 453, 1373, 1419, 1742 |
| AlwI | GGATC | 6 cut(s) | 654, 1245, 1258, 1359, 1573, 1740 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 55 |
| Ama87I | CYCGRG | 1 cut(s) | 749 |
| Aor13HI | TCCGGA | 1 cut(s) | 160 |
| AoxI | GGCC | 1 cut(s) | 1142 |
| ApeKI | GCWGC | 7 cut(s) | 167, 554, 859, 1343, 1346, 1358, 1540 |
| ApoI | RAATTY | 2 cut(s) | 229, 1583 |
| AseI | ATTAAT | 1 cut(s) | 1022 |
| AsuHPI | GGTGA | 3 cut(s) | 725, 916, 1529 |
| AvaI | CYCGRG | 1 cut(s) | 749 |
| BamHI | GGATCC | 1 cut(s) | 1250 |
| BanII | GRGCYC | 2 cut(s) | 750, 1513 |
| BauI | CACGAG | 1 cut(s) | 818 |
| BbsI | GAAGAC | 2 cut(s) | 243, 1527 |
| Bbv12I | GWGCWC | 2 cut(s) | 750, 1513 |
| BbvI | GCAGC | 7 cut(s) | 179, 541, 871, 1355, 1358, 1370, 1552 |
| BccI | CCATC | 7 cut(s) | 317, 376, 965, 1210, 1241, 1489, 1556 |
| BceAI | ACGGC | 1 cut(s) | 165 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 533, 567, 848, 882 |
| BciT130I | CCWGG | 1 cut(s) | 1515 |
| BciVI | GTATCC | 1 cut(s) | 124 |
| BclI | TGATCA | 1 cut(s) | 1467 |
| BcoDI | GTCTC | 6 cut(s) | 162, 309, 453, 1373, 1419, 1742 |
| BfaI | CTAG | 2 cut(s) | 258, 1140 |
| BfmI | CTRYAG | 1 cut(s) | 1035 |
| BfuI | GTATCC | 1 cut(s) | 124 |
| BglII | AGATCT | 2 cut(s) | 44, 373 |
| BisI | GCNGC | 8 cut(s) | 168, 555, 860, 1322, 1344, 1347, 1359, 1541 |
| BlsI | GCNGC | 8 cut(s) | 169, 556, 861, 1323, 1345, 1348, 1360, 1542 |
| Bme1390I | CCNGG | 1 cut(s) | 1515 |
| BmeT110I | CYCGRG | 1 cut(s) | 749 |
| BmgBI | CACGTC | 1 cut(s) | 847 |
| BmiI | GGNNCC | 1 cut(s) | 1252 |
| BmrFI | CCNGG | 1 cut(s) | 1515 |
| BmsI | GCATC | 5 cut(s) | 29, 67, 376, 1280, 1527 |
| BpiI | GAAGAC | 2 cut(s) | 243, 1527 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 743, 775 |
| BpmI | CTGGAG | 2 cut(s) | 362, 1497 |
| BpuEI | CTTGAG | 3 cut(s) | 263, 764, 1748 |
| BsaBI | GATNNNNATC | 1 cut(s) | 43 |
| BsaHI | GRCGYC | 2 cut(s) | 97, 248 |
| BsaI | GGTCTC | 2 cut(s) | 162, 453 |
| BsaJI | CCNNGG | 2 cut(s) | 113, 656 |
| BsaWI | WCCGGW | 3 cut(s) | 160, 982, 1092 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1312 |
| Bse1I | ACTGG | 1 cut(s) | 478 |
| Bse3DI | GCAATG | 1 cut(s) | 1134 |
| Bse8I | GATNNNNATC | 1 cut(s) | 43 |
| BseAI | TCCGGA | 1 cut(s) | 160 |
| BseBI | CCWGG | 1 cut(s) | 1515 |
| BseDI | CCNNGG | 2 cut(s) | 113, 656 |
| BseGI | GGATG | 4 cut(s) | 231, 391, 886, 1252 |
| BseJI | GATNNNNATC | 1 cut(s) | 43 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1312 |
| BseMI | GCAATG | 1 cut(s) | 1134 |
| BseMII | CTCAG | 1 cut(s) | 62 |
| BseNI | ACTGG | 1 cut(s) | 478 |
| BseRI | GAGGAG | 2 cut(s) | 324, 1544 |
| BseXI | GCAGC | 7 cut(s) | 179, 541, 871, 1355, 1358, 1370, 1552 |
| Bsh1236I | CGCG | 1 cut(s) | 431 |
| BshFI | GGCC | 1 cut(s) | 1144 |
| BsiHKAI | GWGCWC | 2 cut(s) | 750, 1513 |
| BsiHKCI | CYCGRG | 1 cut(s) | 749 |
| BsiSI | CCGG | 3 cut(s) | 161, 983, 1093 |
| BslFI | GGGAC | 1 cut(s) | 1472 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1312 |
| BsmAI | GTCTC | 6 cut(s) | 162, 309, 453, 1373, 1419, 1742 |
| BsmBI | CGTCTC | 2 cut(s) | 1373, 1742 |
| BsmFI | GGGAC | 1 cut(s) | 1472 |
| BsmI | GAATGC | 1 cut(s) | 439 |
| BsnI | GGCC | 1 cut(s) | 1144 |
| Bso31I | GGTCTC | 2 cut(s) | 162, 453 |
| BsoBI | CYCGRG | 1 cut(s) | 749 |
| Bsp1286I | GDGCHC | 2 cut(s) | 750, 1513 |
| Bsp13I | TCCGGA | 1 cut(s) | 160 |
| Bsp1407I | TGTACA | 1 cut(s) | 849 |
| BspACI | CCGC | 7 cut(s) | 170, 719, 1115, 1254, 1293, 1321, 1349 |
| BspANI | GGCC | 1 cut(s) | 1144 |
| BspCNI | CTCAG | 1 cut(s) | 61 |
| BspEI | TCCGGA | 1 cut(s) | 160 |
| BspFNI | CGCG | 1 cut(s) | 431 |
| BspHI | TCATGA | 2 cut(s) | 493, 1672 |
| BspLI | GGNNCC | 1 cut(s) | 1252 |
| BspPI | GGATC | 6 cut(s) | 654, 1245, 1258, 1359, 1573, 1740 |
| BspQI | GCTCTTC | 1 cut(s) | 1494 |
| BspTNI | GGTCTC | 2 cut(s) | 162, 453 |
| BsrDI | GCAATG | 1 cut(s) | 1134 |
| BsrGI | TGTACA | 1 cut(s) | 849 |
| BsrI | ACTGG | 1 cut(s) | 478 |
| BssECI | CCNNGG | 2 cut(s) | 113, 656 |
| BssNI | GRCGYC | 2 cut(s) | 97, 248 |
| BssSI | CACGAG | 1 cut(s) | 818 |
| BssT1I | CCWWGG | 1 cut(s) | 656 |
| Bst2BI | CACGAG | 1 cut(s) | 818 |
| Bst2UI | CCWGG | 1 cut(s) | 1515 |
| Bst4CI | ACNGT | 4 cut(s) | 105, 303, 837, 1710 |
| Bst6I | CTCTTC | 2 cut(s) | 312, 1494 |
| BstACI | GRCGYC | 2 cut(s) | 97, 248 |
| BstAUI | TGTACA | 1 cut(s) | 849 |
| BstC8I | GCNNGC | 1 cut(s) | 668 |
| BstDEI | CTNAG | 5 cut(s) | 48, 342, 796, 965, 1571 |
| BstF5I | GGATG | 4 cut(s) | 231, 391, 886, 1252 |
| BstFNI | CGCG | 1 cut(s) | 431 |
| BstMAI | GTCTC | 6 cut(s) | 162, 309, 453, 1373, 1419, 1742 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 725, 1268, 1355 |
| BstNI | CCWGG | 1 cut(s) | 1515 |
| BstSCI | CCNGG | 1 cut(s) | 1513 |
| BstSFI | CTRYAG | 1 cut(s) | 1035 |
| BstUI | CGCG | 1 cut(s) | 431 |
| BstV1I | GCAGC | 7 cut(s) | 179, 541, 871, 1355, 1358, 1370, 1552 |
| BstV2I | GAAGAC | 2 cut(s) | 243, 1527 |
| BstX2I | RGATCY | 5 cut(s) | 44, 373, 1250, 1351, 1565 |
| BstYI | RGATCY | 5 cut(s) | 44, 373, 1250, 1351, 1565 |
| BsuI | GTATCC | 1 cut(s) | 124 |
| BsuRI | GGCC | 1 cut(s) | 1144 |
| BtgZI | GCGATG | 1 cut(s) | 1575 |
| BtrI | CACGTC | 1 cut(s) | 847 |
| BtsCI | GGATG | 4 cut(s) | 231, 391, 886, 1252 |
| Cac8I | GCNNGC | 1 cut(s) | 668 |
| CaiI | CAGNNNCTG | 1 cut(s) | 55 |
| CciI | TCATGA | 2 cut(s) | 493, 1672 |
| CseI | GACGC | 2 cut(s) | 437, 1532 |
| Csp6I | GTAC | 5 cut(s) | 53, 471, 850, 943, 1645 |
| CviAII | CATG | 7 cut(s) | 494, 716, 804, 949, 1174, 1615, 1673 |
| CviQI | GTAC | 5 cut(s) | 53, 471, 850, 943, 1645 |
| DdeI | CTNAG | 5 cut(s) | 48, 342, 796, 965, 1571 |
| DraI | TTTAAA | 2 cut(s) | 271, 526 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 154, 253 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 154, 253 |
| Eam1104I | CTCTTC | 2 cut(s) | 312, 1494 |
| EarI | CTCTTC | 2 cut(s) | 312, 1494 |
| Ecl136II | GAGCTC | 2 cut(s) | 748, 1511 |
| Eco130I | CCWWGG | 1 cut(s) | 656 |
| Eco24I | GRGCYC | 2 cut(s) | 750, 1513 |
| Eco31I | GGTCTC | 2 cut(s) | 162, 453 |
| Eco32I | GATATC | 2 cut(s) | 441, 1378 |
| Eco53kI | GAGCTC | 2 cut(s) | 748, 1511 |
| Eco88I | CYCGRG | 1 cut(s) | 749 |
| EcoICRI | GAGCTC | 2 cut(s) | 748, 1511 |
| EcoRI | GAATTC | 2 cut(s) | 229, 1583 |
| EcoRII | CCWGG | 1 cut(s) | 1513 |
| EcoRV | GATATC | 2 cut(s) | 441, 1378 |
| EcoT14I | CCWWGG | 1 cut(s) | 656 |
| EcoT38I | GRGCYC | 2 cut(s) | 750, 1513 |
| ErhI | CCWWGG | 1 cut(s) | 656 |
| Esp3I | CGTCTC | 2 cut(s) | 1373, 1742 |
| FaeI | CATG | 7 cut(s) | 497, 719, 807, 952, 1177, 1618, 1676 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 846, 878 |
| FaqI | GGGAC | 1 cut(s) | 1472 |
| FatI | CATG | 7 cut(s) | 493, 715, 803, 948, 1173, 1614, 1672 |
| FauI | CCCGC | 1 cut(s) | 163 |
| FbaI | TGATCA | 1 cut(s) | 1467 |
| FblI | GTMKAC | 3 cut(s) | 100, 245, 1009 |
| Fnu4HI | GCNGC | 8 cut(s) | 168, 555, 860, 1322, 1344, 1347, 1359, 1541 |
| FokI | GGATG | 4 cut(s) | 238, 398, 893, 1259 |
| FriOI | GRGCYC | 2 cut(s) | 750, 1513 |
| Fsp4HI | GCNGC | 8 cut(s) | 168, 555, 860, 1322, 1344, 1347, 1359, 1541 |
| FspBI | CTAG | 2 cut(s) | 258, 1140 |
| GluI | GCNGC | 8 cut(s) | 168, 555, 860, 1322, 1344, 1347, 1359, 1541 |
| GsuI | CTGGAG | 2 cut(s) | 362, 1497 |
| HaeIII | GGCC | 1 cut(s) | 1144 |
| HapII | CCGG | 3 cut(s) | 161, 983, 1093 |
| HgaI | GACGC | 2 cut(s) | 437, 1532 |
| Hin1I | GRCGYC | 2 cut(s) | 97, 248 |
| Hin1II | CATG | 7 cut(s) | 497, 719, 807, 952, 1177, 1618, 1676 |
| HincII | GTYRAC | 2 cut(s) | 101, 246 |
| HindII | GTYRAC | 2 cut(s) | 101, 246 |
| HindIII | AAGCTT | 3 cut(s) | 623, 1399, 1667 |
| HpaII | CCGG | 3 cut(s) | 161, 983, 1093 |
| HphI | GGTGA | 3 cut(s) | 725, 916, 1529 |
| Hpy166II | GTNNAC | 9 cut(s) | 101, 246, 427, 850, 980, 994, 1010, 1042, 1169 |
| Hpy8I | GTNNAC | 9 cut(s) | 101, 246, 427, 850, 980, 994, 1010, 1042, 1169 |
| Hpy99I | CGWCG | 7 cut(s) | 66, 96, 99, 102, 105, 151, 250 |
| HpyAV | CCTTC | 4 cut(s) | 27, 871, 1099, 1451 |
| HpyCH4III | ACNGT | 4 cut(s) | 105, 303, 837, 1710 |
| HpyCH4IV | ACGT | 4 cut(s) | 97, 248, 846, 1592 |
| HpyCH4V | TGCA | 5 cut(s) | 42, 58, 389, 1358, 1540 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 725, 1268, 1355 |
| HpyF3I | CTNAG | 5 cut(s) | 48, 342, 796, 965, 1571 |
| HpySE526I | ACGT | 4 cut(s) | 97, 248, 846, 1592 |
| Hsp92I | GRCGYC | 2 cut(s) | 97, 248 |
| Hsp92II | CATG | 7 cut(s) | 497, 719, 807, 952, 1177, 1618, 1676 |
| Kpn2I | TCCGGA | 1 cut(s) | 160 |
| Ksp22I | TGATCA | 1 cut(s) | 1467 |
| LguI | GCTCTTC | 1 cut(s) | 1494 |
| LmnI | GCTCC | 5 cut(s) | 190, 200, 966, 1508, 1516 |
| Lsp1109I | GCAGC | 7 cut(s) | 179, 541, 871, 1355, 1358, 1370, 1552 |
| LweI | GCATC | 5 cut(s) | 29, 67, 376, 1280, 1527 |
| MaeI | CTAG | 2 cut(s) | 258, 1140 |
| MaeII | ACGT | 4 cut(s) | 97, 248, 846, 1592 |
| MaeIII | GTNAC | 5 cut(s) | 214, 261, 738, 815, 1070 |
| MfeI | CAATTG | 1 cut(s) | 80 |
| MflI | RGATCY | 5 cut(s) | 44, 373, 1250, 1351, 1565 |
| MhlI | GDGCHC | 2 cut(s) | 750, 1513 |
| MluCI | AATT | 5 cut(s) | 30, 80, 229, 1030, 1583 |
| MlyI | GAGTC | 2 cut(s) | 1544, 1660 |
| MmeI | TCCRAC | 2 cut(s) | 99, 178 |
| MroI | TCCGGA | 1 cut(s) | 160 |
| MseI | TTAA | 8 cut(s) | 270, 525, 578, 809, 921, 1022, 1326, 1750 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1022 |
| MspA1I | CMGCKG | 2 cut(s) | 170, 1349 |
| MspI | CCGG | 3 cut(s) | 161, 983, 1093 |
| MspR9I | CCNGG | 1 cut(s) | 1515 |
| MunI | CAATTG | 1 cut(s) | 80 |
| Mva1269I | GAATGC | 1 cut(s) | 439 |
| MvaI | CCWGG | 1 cut(s) | 1515 |
| MvnI | CGCG | 1 cut(s) | 431 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 725, 1268, 1355 |
| NlaIII | CATG | 7 cut(s) | 497, 719, 807, 952, 1177, 1618, 1676 |
| NlaIV | GGNNCC | 1 cut(s) | 1252 |
| NmeAIII | GCCGAG | 1 cut(s) | 380 |
| NmuCI | GTSAC | 2 cut(s) | 738, 815 |
| PaeR7I | CTCGAG | 1 cut(s) | 749 |
| PagI | TCATGA | 2 cut(s) | 493, 1672 |
| PciSI | GCTCTTC | 1 cut(s) | 1494 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 251 |
| PctI | GAATGC | 1 cut(s) | 439 |
| PflFI | GACNNNGTC | 1 cut(s) | 96 |
| PkrI | GCNGC | 8 cut(s) | 169, 556, 861, 1323, 1345, 1348, 1360, 1542 |
| PleI | GAGTC | 2 cut(s) | 1544, 1659 |
| PpsI | GAGTC | 2 cut(s) | 1544, 1659 |
| PshBI | ATTAAT | 1 cut(s) | 1022 |
| Psp124BI | GAGCTC | 2 cut(s) | 750, 1513 |
| Psp6I | CCWGG | 1 cut(s) | 1513 |
| PspGI | CCWGG | 1 cut(s) | 1513 |
| PspN4I | GGNNCC | 1 cut(s) | 1252 |
| PspXI | VCTCGAGB | 1 cut(s) | 749 |
| PstNI | CAGNNNCTG | 1 cut(s) | 55 |
| PsuI | RGATCY | 5 cut(s) | 44, 373, 1250, 1351, 1565 |
| PsyI | GACNNNGTC | 1 cut(s) | 96 |
| RsaI | GTAC | 5 cut(s) | 54, 472, 851, 944, 1646 |
| RsaNI | GTAC | 5 cut(s) | 53, 471, 850, 943, 1645 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1022 |
| SacI | GAGCTC | 2 cut(s) | 750, 1513 |
| SalI | GTCGAC | 2 cut(s) | 99, 244 |
| SapI | GCTCTTC | 1 cut(s) | 1494 |
| SaqAI | TTAA | 8 cut(s) | 270, 525, 578, 809, 921, 1022, 1326, 1750 |
| SatI | GCNGC | 8 cut(s) | 168, 555, 860, 1322, 1344, 1347, 1359, 1541 |
| SchI | GAGTC | 2 cut(s) | 1544, 1660 |
| ScrFI | CCNGG | 1 cut(s) | 1515 |
| SduI | GDGCHC | 2 cut(s) | 750, 1513 |
| SfaNI | GCATC | 5 cut(s) | 29, 67, 376, 1280, 1527 |
| SfcI | CTRYAG | 1 cut(s) | 1035 |
| Sfr274I | CTCGAG | 1 cut(s) | 749 |
| SgrDI | CGTCGACG | 1 cut(s) | 99 |
| SlaI | CTCGAG | 1 cut(s) | 749 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1022 |
| SmlI | CTYRAG | 4 cut(s) | 278, 743, 749, 1727 |
| SmoI | CTYRAG | 4 cut(s) | 278, 743, 749, 1727 |
| Sse9I | AATT | 5 cut(s) | 30, 80, 229, 1030, 1583 |
| SsiI | CCGC | 7 cut(s) | 170, 719, 1115, 1254, 1293, 1321, 1349 |
| SspI | AATATT | 1 cut(s) | 517 |
| SspMI | CTAG | 2 cut(s) | 258, 1140 |
| SstI | GAGCTC | 2 cut(s) | 750, 1513 |
| StyD4I | CCNGG | 1 cut(s) | 1513 |
| StyI | CCWWGG | 1 cut(s) | 656 |
| TaaI | ACNGT | 4 cut(s) | 105, 303, 837, 1710 |
| TaiI | ACGT | 4 cut(s) | 100, 251, 849, 1595 |
| TaqI | TCGA | 7 cut(s) | 74, 100, 146, 245, 287, 750, 1587 |
| TaqII | GACCGA | 2 cut(s) | 144, 858 |
| TasI | AATT | 5 cut(s) | 30, 80, 229, 1030, 1583 |
| TatI | WGTACW | 2 cut(s) | 849, 1644 |
| TauI | GCSGC | 1 cut(s) | 1324 |
| Tru1I | TTAA | 8 cut(s) | 270, 525, 578, 809, 921, 1022, 1326, 1750 |
| Tru9I | TTAA | 8 cut(s) | 270, 525, 578, 809, 921, 1022, 1326, 1750 |
| TseFI | GTSAC | 2 cut(s) | 738, 815 |
| TseI | GCWGC | 7 cut(s) | 167, 554, 859, 1343, 1346, 1358, 1540 |
| Tsp45I | GTSAC | 2 cut(s) | 738, 815 |
| TspGWI | ACGGA | 5 cut(s) | 233, 755, 768, 1246, 1476 |
| Tth111I | GACNNNGTC | 1 cut(s) | 96 |
| VspI | ATTAAT | 1 cut(s) | 1022 |
| XapI | RAATTY | 2 cut(s) | 229, 1583 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 470 |
| XhoI | CTCGAG | 1 cut(s) | 749 |
| XmiI | GTMKAC | 3 cut(s) | 100, 245, 1009 |
| XspI | CTAG | 2 cut(s) | 258, 1140 |
| ZraI | GACGTC | 2 cut(s) | 98, 249 |