AT3G19230

Leucine-rich repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
6660800 .. 6663558
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19230.1

Sequence Viewer

Length: 1560 bp
ATGTCTCTGTTCTTCTTTCTCTTATTATGCTTCTCCATCTCTCACGCTCTCCCTCCTCCTCGAGGTTTCTTCTTAAATTGTGGATCATCTTCTTCAACAAACCTCAACGAGATAGAATACACACCGGACGAAGGATTCATTTCCGTGGGAAATACGACGACCATTAAGCAAAAAGACCTCGTTCCGATCCTCTCCACACTACGTTACTTTCCCGACAAGTCATCGCGAAAACACTGTTATAATTTCCCTGTCGCAAAGACCTCCAAGTACCTTATTCGAACCACTTACTACTACGGTAACTTTGACGGTAAAAACAACCCACCTGTGTTTGATCAGATCATTGGAGGCACAAAATGGAGCGTCGTGAATACGTCAGAGGATTACGCCAAGGGTCAGAGTTCTTATTACGAGATCATTGTTGGTGTTCCTGGGAACAGACTAAGTGTTTGTCTAGCCAAGAATGCACATACCCTTTCTTCCTCTCCTTTTATATCGTCTTTAGATGTCCAATCTCTTGAAGATACAATGTACAATTCCACAGACCTCGGGTCCTACAAGCTCAGCCTCATAGCCAGGAACAGCTTTGGAGGAGATGGGGAGATCATCAGCTATCCAGATGACAAATACAACCGTTTATGGCAACCGTTTTCGGACCAGAAGCATCTGACGGTGACTTCTCGAAGCAGAATTAACCCGTCAAACTTCTGGAACATTCCACCTGCTGAAGCCTTTGTGGAAGGTTTCACAGCAAGTAAAGGGAAGCCTCTAGAGCTTCAATGGCCACCTTTTCCTCTTCCGGCCACAAAGTACTATGTAGCTTTGTATTTTCAGGACAATCGGAGTCCAGGCCCCATGAGCTGGAGGGCTTTTGATGTCTCAGTCAATGGACTTTCCTTTTTAAGGAAGCTCAATGTGAGCACTAATGGGGTTATGGTTTACTCTGGCCAGTGGCCATTATCGGGTCAGACTCAGATCACATTGACTCCGGCCAAGGATGCGCCGGTTGGACCTTTCATTAACGCCGGAGAAGTGTTTCAAATTCTTCCTCTTGGTGGAACCACTAATATTAAAGATGCAATTGCTATGGAAGATCTGTTAGAGAGCATCATGAAGCCTCCAGTGGATTGGTCCGGCGACCCATGCCTCCCTCGTGCTAACTCGTGGACTGGCCTAACTTGCTCCAAAGACAAAATCGCCAGAGTGATTTCTCTAAATTTGACAAATCTTGGACTATCTGGGTCTCTACCACCAAGCATAAACAAGATGACTGCCCTTAAAGATCTATGGTTGGGGAAGAACAAGCTCACAGGACCGATCCCAGATTTGAGTCCAATGACGAGATTGGAAACTCTACATTTAGAGGACAATCAGTTCACTGGAGCAATTCCTGAGTCACTTGCAAAGCTCCCTAGTCTCCGCACACTGTCCATCAAGAACAACAAGCTTAAAGGTACAATTCCTAGTGTACTCCTCCAGAGAAAGGGCCTAACTATCCAGGCGTCTCCTGAGAACATGCCAAGCACAAATAATACCGGCCAATTTCGGGTTGCTAACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

519

Amino Acids

57.26

Weight (kDa)

8.96

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 25 - 347 2.9e-75 Malectin-like domain
LRR_4 PF12799 446 - 483 1.1e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
AarI CACCTGC 1 cut(s) 727
AbsI CCTCGAGG 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 727
AccB7I CCANNNNNTGG 1 cut(s) 858
AccII CGCG 1 cut(s) 226
AciI CCGC 1 cut(s) 1417
AclWI GGATC 3 cut(s) 91, 181, 1309
AcoI YGGCCR 6 cut(s) 779, 798, 943, 950, 987, 1534
AcsI RAATTY 2 cut(s) 1038, 1213
AcuI CTGAAG 1 cut(s) 744
AcyI GRCGYC 1 cut(s) 1499
AfaI GTAC 5 cut(s) 269, 530, 809, 1453, 1467
AfiI CCNNNNNNNGG 8 cut(s) 62, 131, 858, 900, 959, 1052, 1480, 1543
AgsI TTSAA 4 cut(s) 96, 518, 776, 1037
AhdI GACNNNNNGTC 1 cut(s) 547
AjnI CCWGG 4 cut(s) 427, 572, 844, 1494
AloI GAACNNNNNNTCC 2 cut(s) 1355, 1387
Alw21I GWGCWC 1 cut(s) 920
Alw26I GTCTC 5 cut(s) 9, 880, 1245, 1418, 1506
AlwI GGATC 3 cut(s) 91, 181, 1309
Ama87I CYCGRG 2 cut(s) 60, 545
AoxI GGCC 9 cut(s) 779, 798, 847, 943, 950, 987, 1168, 1483, 1534
ApoI RAATTY 2 cut(s) 1038, 1213
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
Asp700I GAANNNNTTC 1 cut(s) 1032
AspLEI GCGC 1 cut(s) 1000
AspS9I GGNCC 7 cut(s) 549, 652, 848, 1007, 1128, 1310, 1483
AsuHPI GGTGA 1 cut(s) 682
AsuII TTCGAA 1 cut(s) 277
AvaI CYCGRG 2 cut(s) 60, 545
AvaII GGWCC 5 cut(s) 549, 652, 1007, 1128, 1310
BalI TGGCCA 3 cut(s) 781, 945, 952
BauI CACGAG 2 cut(s) 1149, 1159
Bbv12I GWGCWC 1 cut(s) 920
BccI CCATC 3 cut(s) 44, 587, 1436
BciT130I CCWGG 4 cut(s) 429, 574, 846, 1496
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 5 cut(s) 9, 880, 1245, 1418, 1506
BfaI CTAG 4 cut(s) 452, 767, 1410, 1461
BfuAI ACCTGC 1 cut(s) 727
BglII AGATCT 2 cut(s) 1090, 1279
BlpI GCTNAGC 1 cut(s) 560
BmcAI AGTACT 1 cut(s) 809
Bme1390I CCNGG 4 cut(s) 429, 574, 846, 1496
Bme18I GGWCC 5 cut(s) 549, 652, 1007, 1128, 1310
BmeRI GACNNNNNGTC 1 cut(s) 547
BmeT110I CYCGRG 2 cut(s) 60, 545
BmgT120I GGNCC 7 cut(s) 549, 652, 848, 1007, 1128, 1310, 1483
BmiI GGNNCC 3 cut(s) 550, 850, 1057
BmrFI CCNGG 4 cut(s) 429, 574, 846, 1496
BmsI GCATC 4 cut(s) 670, 985, 1063, 1113
BpmI CTGGAG 4 cut(s) 880, 1101, 1398, 1457
Bpu1102I GCTNAGC 1 cut(s) 560
Bpu14I TTCGAA 1 cut(s) 277
BsaHI GRCGYC 1 cut(s) 1499
BsaI GGTCTC 1 cut(s) 1245
BsaJI CCNNGG 5 cut(s) 144, 387, 428, 544, 990
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 967, 997
Bsc4I CCNNNNNNNGG 8 cut(s) 62, 131, 858, 900, 959, 1052, 1480, 1543
Bse118I RCCGGY 2 cut(s) 1000, 1532
Bse1I ACTGG 4 cut(s) 946, 1118, 1171, 1381
BseBI CCWGG 4 cut(s) 429, 574, 846, 1496
BseDI CCNNGG 5 cut(s) 144, 387, 428, 544, 990
BseGI GGATG 1 cut(s) 1000
BseLI CCNNNNNNNGG 8 cut(s) 62, 131, 858, 900, 959, 1052, 1480, 1543
BseMII CTCAG 5 cut(s) 574, 891, 983, 1380, 1497
BseNI ACTGG 4 cut(s) 946, 1118, 1171, 1381
BseRI GAGGAG 4 cut(s) 45, 48, 603, 1460
Bsh1236I CGCG 1 cut(s) 226
BshFI GGCC 9 cut(s) 781, 800, 849, 945, 952, 989, 1170, 1485, 1536
BsiHKAI GWGCWC 1 cut(s) 920
BsiHKCI CYCGRG 2 cut(s) 60, 545
BsiSI CCGG 7 cut(s) 125, 797, 986, 1001, 1023, 1131, 1533
BslI CCNNNNNNNGG 8 cut(s) 62, 131, 858, 900, 959, 1052, 1480, 1543
BsmAI GTCTC 5 cut(s) 9, 880, 1245, 1418, 1506
BsmBI CGTCTC 1 cut(s) 1506
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 9 cut(s) 781, 800, 849, 945, 952, 989, 1170, 1485, 1536
Bso31I GGTCTC 1 cut(s) 1245
BsoBI CYCGRG 2 cut(s) 60, 545
Bsp119I TTCGAA 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 920
Bsp1407I TGTACA 1 cut(s) 528
Bsp1720I GCTNAGC 1 cut(s) 560
Bsp68I TCGCGA 1 cut(s) 226
BspACI CCGC 1 cut(s) 1417
BspANI GGCC 9 cut(s) 781, 800, 849, 945, 952, 989, 1170, 1485, 1536
BspCNI CTCAG 5 cut(s) 573, 890, 982, 1381, 1498
BspFNI CGCG 1 cut(s) 226
BspHI TCATGA 1 cut(s) 1107
BspLI GGNNCC 3 cut(s) 550, 850, 1057
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 3 cut(s) 91, 181, 1309
BspT104I TTCGAA 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 1245
BsrFI RCCGGY 2 cut(s) 1000, 1532
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 4 cut(s) 946, 1118, 1171, 1381
BssAI RCCGGY 2 cut(s) 1000, 1532
BssECI CCNNGG 5 cut(s) 144, 387, 428, 544, 990
BssNI GRCGYC 1 cut(s) 1499
BssSI CACGAG 2 cut(s) 1149, 1159
BssT1I CCWWGG 2 cut(s) 387, 990
Bst2BI CACGAG 2 cut(s) 1149, 1159
Bst2UI CCWGG 4 cut(s) 429, 574, 846, 1496
Bst4CI ACNGT 7 cut(s) 236, 296, 308, 632, 645, 670, 1425
Bst6I CTCTTC 1 cut(s) 798
BstACI GRCGYC 1 cut(s) 1499
BstAUI TGTACA 1 cut(s) 528
BstBI TTCGAA 1 cut(s) 277
BstDEI CTNAG 6 cut(s) 440, 560, 877, 969, 1389, 1506
BstDSI CCRYGG 1 cut(s) 144
BstENI CCTNNNNNAGG 2 cut(s) 60, 898
BstF5I GGATG 1 cut(s) 1000
BstFNI CGCG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 1000
BstMAI GTCTC 5 cut(s) 9, 880, 1245, 1418, 1506
BstMWI GCNNNNNNNGC 7 cut(s) 461, 769, 778, 855, 995, 1140, 1176
BstNI CCWGG 4 cut(s) 429, 574, 846, 1496
BstNSI RCATGY 1 cut(s) 1516
BstSCI CCNGG 4 cut(s) 427, 572, 844, 1494
BstUI CGCG 1 cut(s) 226
BstX2I RGATCY 2 cut(s) 1090, 1279
BstXI CCANNNNNNTGG 1 cut(s) 1125
BstYI RGATCY 2 cut(s) 1090, 1279
BsuRI GGCC 9 cut(s) 781, 800, 849, 945, 952, 989, 1170, 1485, 1536
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 1000
BtsIMutI CAGTG 5 cut(s) 232, 953, 1125, 1374, 1421
BtuMI TCGCGA 1 cut(s) 226
BveI ACCTGC 1 cut(s) 727
CciI TCATGA 1 cut(s) 1107
CfoI GCGC 1 cut(s) 1000
Cfr10I RCCGGY 2 cut(s) 1000, 1532
Cfr13I GGNCC 7 cut(s) 549, 652, 848, 1007, 1128, 1310, 1483
CseI GACGC 2 cut(s) 349, 1488
Csp6I GTAC 5 cut(s) 268, 529, 808, 1452, 1466
CviAII CATG 4 cut(s) 853, 1108, 1140, 1513
CviQI GTAC 5 cut(s) 268, 529, 808, 1452, 1466
DdeI CTNAG 6 cut(s) 440, 560, 877, 969, 1389, 1506
DriI GACNNNNNGTC 1 cut(s) 547
EaeI YGGCCR 6 cut(s) 779, 798, 943, 950, 987, 1534
Eam1104I CTCTTC 1 cut(s) 798
Eam1105I GACNNNNNGTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 798
Eco130I CCWWGG 2 cut(s) 387, 990
Eco31I GGTCTC 1 cut(s) 1245
Eco47I GGWCC 5 cut(s) 549, 652, 1007, 1128, 1310
Eco57I CTGAAG 1 cut(s) 744
Eco88I CYCGRG 2 cut(s) 60, 545
EcoNI CCTNNNNNAGG 2 cut(s) 60, 898
EcoO109I RGGNCCY 3 cut(s) 549, 848, 1483
EcoRII CCWGG 4 cut(s) 427, 572, 844, 1494
EcoT14I CCWWGG 2 cut(s) 387, 990
ErhI CCWWGG 2 cut(s) 387, 990
Esp3I CGTCTC 1 cut(s) 1506
FaeI CATG 4 cut(s) 856, 1111, 1143, 1516
FatI CATG 4 cut(s) 852, 1107, 1139, 1512
FbaI TGATCA 1 cut(s) 331
FokI GGATG 1 cut(s) 1007
FspBI CTAG 4 cut(s) 452, 767, 1410, 1461
GlaI GCGC 1 cut(s) 999
GsuI CTGGAG 4 cut(s) 880, 1101, 1398, 1457
HaeIII GGCC 9 cut(s) 781, 800, 849, 945, 952, 989, 1170, 1485, 1536
HapII CCGG 7 cut(s) 125, 797, 986, 1001, 1023, 1131, 1533
HgaI GACGC 2 cut(s) 349, 1488
HhaI GCGC 1 cut(s) 1000
Hin1I GRCGYC 1 cut(s) 1499
Hin1II CATG 4 cut(s) 856, 1111, 1143, 1516
Hin6I GCGC 1 cut(s) 998
HinP1I GCGC 1 cut(s) 998
HindIII AAGCTT 1 cut(s) 1442
HinfI GANTC 6 cut(s) 135, 841, 967, 982, 1327, 1391
HpaII CCGG 7 cut(s) 125, 797, 986, 1001, 1023, 1131, 1533
HphI GGTGA 1 cut(s) 682
Hpy166II GTNNAC 4 cut(s) 937, 1164, 1374, 1466
Hpy188I TCNGA 9 cut(s) 186, 336, 376, 396, 652, 666, 840, 966, 972
Hpy8I GTNNAC 4 cut(s) 937, 1164, 1374, 1466
Hpy99I CGWCG 2 cut(s) 160, 365
HpyAV CCTTC 2 cut(s) 125, 731
HpyCH4III ACNGT 7 cut(s) 236, 296, 308, 632, 645, 670, 1425
HpyCH4IV ACGT 2 cut(s) 202, 371
HpyCH4V TGCA 3 cut(s) 464, 1076, 1400
HpyF10VI GCNNNNNNNGC 7 cut(s) 461, 769, 778, 855, 995, 1140, 1176
HpyF3I CTNAG 6 cut(s) 440, 560, 877, 969, 1389, 1506
HpySE526I ACGT 2 cut(s) 202, 371
Hsp92I GRCGYC 1 cut(s) 1499
Hsp92II CATG 4 cut(s) 856, 1111, 1143, 1516
HspAI GCGC 1 cut(s) 998
Ksp22I TGATCA 1 cut(s) 331
LmnI GCTCC 4 cut(s) 357, 1184, 1379, 1410
LweI GCATC 4 cut(s) 670, 985, 1063, 1113
MaeI CTAG 4 cut(s) 452, 767, 1410, 1461
MaeII ACGT 2 cut(s) 202, 371
MaeIII GTNAC 4 cut(s) 203, 296, 670, 1392
MfeI CAATTG 1 cut(s) 1077
MflI RGATCY 2 cut(s) 1090, 1279
MhlI GDGCHC 1 cut(s) 920
MlsI TGGCCA 3 cut(s) 781, 945, 952
MluNI TGGCCA 3 cut(s) 781, 945, 952
MlyI GAGTC 5 cut(s) 850, 961, 976, 1336, 1400
MmeI TCCRAC 1 cut(s) 985
Mox20I TGGCCA 3 cut(s) 781, 945, 952
MroXI GAANNNNTTC 1 cut(s) 1032
MscI TGGCCA 3 cut(s) 781, 945, 952
MseI TTAA 8 cut(s) 74, 165, 690, 899, 1017, 1068, 1275, 1446
MslI CAYNNNNRTG 1 cut(s) 143
Msp20I TGGCCA 3 cut(s) 781, 945, 952
MspA1I CMGCKG 1 cut(s) 1557
MspI CCGG 7 cut(s) 125, 797, 986, 1001, 1023, 1131, 1533
MspR9I CCNGG 4 cut(s) 429, 574, 846, 1496
MunI CAATTG 1 cut(s) 1077
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 4 cut(s) 429, 574, 846, 1496
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 7 cut(s) 461, 769, 778, 855, 995, 1140, 1176
NlaIII CATG 4 cut(s) 856, 1111, 1143, 1516
NlaIV GGNNCC 3 cut(s) 550, 850, 1057
NmuCI GTSAC 2 cut(s) 670, 1392
NruI TCGCGA 1 cut(s) 226
NspI RCATGY 1 cut(s) 1516
NspV TTCGAA 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 60
PagI TCATGA 1 cut(s) 1107
PaqCI CACCTGC 1 cut(s) 727
PctI GAATGC 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 858
PleI GAGTC 5 cut(s) 849, 961, 976, 1335, 1399
PpsI GAGTC 5 cut(s) 849, 961, 976, 1335, 1399
PpuMI RGGWCCY 1 cut(s) 549
PsiI TTATAA 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 4 cut(s) 427, 572, 844, 1494
PspGI CCWGG 4 cut(s) 427, 572, 844, 1494
PspN4I GGNNCC 3 cut(s) 550, 850, 1057
PspPI GGNCC 7 cut(s) 549, 652, 848, 1007, 1128, 1310, 1483
PspPPI RGGWCCY 1 cut(s) 549
PspXI VCTCGAGB 1 cut(s) 60
PsuI RGATCY 2 cut(s) 1090, 1279
PvuII CAGCTG 1 cut(s) 1557
RruI TCGCGA 1 cut(s) 226
RsaI GTAC 5 cut(s) 269, 530, 809, 1453, 1467
RsaNI GTAC 5 cut(s) 268, 529, 808, 1452, 1466
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 8 cut(s) 74, 165, 690, 899, 1017, 1068, 1275, 1446
Sau96I GGNCC 7 cut(s) 549, 652, 848, 1007, 1128, 1310, 1483
ScaI AGTACT 1 cut(s) 809
SchI GAGTC 5 cut(s) 850, 961, 976, 1336, 1400
ScrFI CCNGG 4 cut(s) 429, 574, 846, 1496
SduI GDGCHC 1 cut(s) 920
SfaNI GCATC 4 cut(s) 670, 985, 1063, 1113
Sfr274I CTCGAG 1 cut(s) 60
SfuI TTCGAA 1 cut(s) 277
SinI GGWCC 5 cut(s) 549, 652, 1007, 1128, 1310
SlaI CTCGAG 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
SsiI CCGC 1 cut(s) 1417
SspI AATATT 1 cut(s) 1066
SspMI CTAG 4 cut(s) 452, 767, 1410, 1461
StyD4I CCNGG 4 cut(s) 427, 572, 844, 1494
StyI CCWWGG 2 cut(s) 387, 990
TaaI ACNGT 7 cut(s) 236, 296, 308, 632, 645, 670, 1425
TaiI ACGT 2 cut(s) 205, 374
TaqI TCGA 3 cut(s) 61, 277, 679
TaqII GACCGA 1 cut(s) 1327
TatI WGTACW 3 cut(s) 528, 807, 1465
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 8 cut(s) 74, 165, 690, 899, 1017, 1068, 1275, 1446
Tru9I TTAA 8 cut(s) 74, 165, 690, 899, 1017, 1068, 1275, 1446
TscAI CASTG 5 cut(s) 239, 953, 1125, 1381, 1428
TseFI GTSAC 2 cut(s) 670, 1392
Tsp45I GTSAC 2 cut(s) 670, 1392
TspDTI ATGAA 3 cut(s) 127, 1003, 1124
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 5 cut(s) 239, 953, 1125, 1381, 1428
Van91I CCANNNNNTGG 1 cut(s) 858
VpaK11BI GGWCC 5 cut(s) 549, 652, 1007, 1128, 1310
XagI CCTNNNNNAGG 2 cut(s) 60, 898
XapI RAATTY 2 cut(s) 1038, 1213
XbaI TCTAGA 1 cut(s) 766
XceI RCATGY 1 cut(s) 1516
XhoI CTCGAG 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 4 cut(s) 452, 767, 1410, 1461
ZrmI AGTACT 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.