Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006604

Physical Location & Seq

Genomic Coordinates Forward (+)

13154675 .. 13158711

Gene Structure 4037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG084200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGTCCCTCTGGCTCTTACTCCTATGGATGGTCACCATTCCTCTCCAAGCCAACTCTCAAAGTAACCCTAGAGGTTACCTCCTAAACTGTGGCGCTGGGGCCTCATCCAATAATGATGTGATCGTAGGTAGCCTGAAGTATGTCACAGATGAAGGTTACATATCAGTTGGAAAAACGAGCAACATCAAGCAGAAAGACTTGGTTCCCATACTCACTACATTGCGCTATTTTCCAGACAAGTCTGCGCGAAAATATTGTTATGAATTTCCAGTGATCAAAGATCGAAAGTACCTTGTGAGGACGACTTACTATTATGGTGGTTTTGATGGTGGGAAGGAGCCACCGGTGTTTGACCAAATTGTGGATGGGACTAAGTGGAGTGTAGTTAACACAACAGAGGACTTTGCCAATGGACTTAGCTCGTATTATGAGATAGTGGTGTCGGCAAAGGGGAAGGAACTAAGTGTGTGTCTTGCTAGGAATAACATGACGGGGACTGATTCTAGTCCCTTCATCTCAGCTCTTGAGCTGGAGTACTTGGATGACTCGGTGTATAACTCCACCGATTTTAACAAGTATGGACTTAGTACTGTGGCAAGGGCAAACTTCGGAACTCCTACTAATGGTGACGTACTTGGCTTTCCAGATGACAAATTCAACCGGTTATGGCAACCATTCAAGGACAAGAACCCTGTGTCCACTAACAAGGCCGATGTCACTCCCTCTGATTTCTGGAATGTCCCACCAGCAAAATTATTCGAGAATTCTATCACAACAAGCCGAGGGAAGGAACTTCGGCTCCAGTGGCCACCTGTGTCACTCCCCAACGCAGCTTACTACATTGCATTGTATTTCCAGGACAACCGGAACCCAAGCCCTTTTAGTTGGAGAGTCTTCAATGTTTCAGTGAATGGCAAGCCCTTCTCTGGCAATCTCAATGTCACCACCAAGGGCTTAACAGTTTATGCAGCACAGTGGCCTCTGTCTGGAAAGACTGAGATTGTCCTAGCCCCTGCCGTGGGCATGGCTGTTGGGCCGGTCGTCACTGCTGGTGAGATCATGCAGATTTTTCCTCTTGGATTAGAAACGCTTCACAGAGATGTCGAGGCAATGCATGAGGTGAAAAGGAGTTTTGACAACCCACCTTCCGATTGGAGTGGCGATCCTTGTTTACCTGAAGCCAATTCTTGGACTGGTGTTACATGTTCTCATGGAAATTCTTCTCGAGTGATATCTCTGAATTTAACTAGCGTCGGGCTATCTGGGTCACTATCACCAAACATAGCAAACTTAACTGCCCTACACCATATTTGGCTTGGCGATAACAAACTTAAAGGCGAGATCCCAGACATGGGCTCATTAAAGGAGTTGGAAACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Malectin_like

Protein Analysis

460

Amino Acids

50.69

Weight (kDa)

5.84

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	28 - 355	7.6e-63	Malectin-like domain
LRRNT_2	PF08263	366 - 403	3.6e-06	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19230
fragaria_vesca	FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120
malus_domestica	MD05G1080300.v1.1
prunus_persica	Prupe.8G124100_v2.0.a1
pyrus_communis	pycom05g07330
rosa_chinensis	RchiOBHm_Chr6g0257071
rosa_laevigata	RLG00000014675
rosa_multiflora	Rmu_co8457165.1_g000001 Rmu_sc0000659.1_g000006
rosa_roxburghii	Rroxscaffold_7G00208490
rosa_rugosa	Rorug05G0575400
rosa_samantha	Rh6AG093400 Rh6BG084200 Rh6CG080800 Rh6DG076200
rosa_wichuraiana	Rw6G008030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	361, 1188
AccII	CGCG	1 cut(s)	247
AclWI	GGATC	2 cut(s)	1157, 1336
AcoI	YGGCCR	1 cut(s)	806
AcsI	RAATTY	5 cut(s)	263, 653, 763, 1216, 1240
AcuI	CTGAAG	2 cut(s)	155, 1197
AfaI	GTAC	4 cut(s)	290, 536, 589, 633
AflIII	ACRYGT	1 cut(s)	1202
AgeI	ACCGGT	2 cut(s)	343, 660
AgsI	TTSAA	3 cut(s)	658, 679, 898
AjnI	CCWGG	1 cut(s)	855
AloI	GAACNNNNNNTCC	4 cut(s)	680, 712, 783, 815
AluBI	AGCT	4 cut(s)	420, 521, 529, 833
AluI	AGCT	4 cut(s)	420, 521, 529, 833
AlwI	GGATC	2 cut(s)	1157, 1336
Ama87I	CYCGRG	1 cut(s)	1224
AoxI	GGCC	5 cut(s)	99, 708, 806, 977, 1034
ApeKI	GCWGC	2 cut(s)	830, 968
ApoI	RAATTY	5 cut(s)	263, 653, 763, 1216, 1240
AsiGI	ACCGGT	2 cut(s)	343, 660
Asp700I	GAANNNNTTC	2 cut(s)	1089, 1219
AspLEI	GCGC	3 cut(s)	95, 225, 247
AspS9I	GGNCC	2 cut(s)	99, 1034
AsuHPI	GGTGA	6 cut(s)	25, 638, 934, 1064, 1132, 1266
AvaI	CYCGRG	1 cut(s)	1224
BalI	TGGCCA	1 cut(s)	808
BanII	GRGCYC	1 cut(s)	1358
BbsI	GAAGAC	1 cut(s)	886
BbvI	GCAGC	2 cut(s)	842, 980
BccI	CCATC	3 cut(s)	22, 320, 359
BceAI	ACGGC	1 cut(s)	1001
BciT130I	CCWGG	1 cut(s)	857
BclI	TGATCA	1 cut(s)	273
BfaI	CTAG	5 cut(s)	69, 477, 504, 1007, 1248
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	2 cut(s)	831, 969
BlsI	GCNGC	2 cut(s)	832, 970
BmcAI	AGTACT	2 cut(s)	536, 589
Bme1390I	CCNGG	1 cut(s)	857
BmeT110I	CYCGRG	1 cut(s)	1224
BmgT120I	GGNCC	2 cut(s)	99, 1034
BmiI	GGNNCC	5 cut(s)	100, 204, 339, 800, 869
BmrFI	CCNGG	1 cut(s)	857
BpiI	GAAGAC	1 cut(s)	886
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BpmI	CTGGAG	2 cut(s)	551, 785
BpuEI	CTTGAG	1 cut(s)	545
BsaJI	CCNNGG	3 cut(s)	781, 948, 1017
BsaWI	WCCGGW	3 cut(s)	343, 660, 864
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
Bse118I	RCCGGY	3 cut(s)	343, 660, 1036
Bse1I	ACTGG	3 cut(s)	269, 802, 1198
Bse3DI	GCAATG	3 cut(s)	218, 840, 1116
BseBI	CCWGG	1 cut(s)	857
BseDI	CCNNGG	3 cut(s)	781, 948, 1017
BseGI	GGATG	4 cut(s)	33, 104, 370, 547
BseMI	GCAATG	3 cut(s)	218, 840, 1116
BseMII	CTCAG	2 cut(s)	531, 987
BseNI	ACTGG	3 cut(s)	269, 802, 1198
BseXI	GCAGC	2 cut(s)	842, 980
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	247
Bsh1285I	CGRYCG	1 cut(s)	1041
BshFI	GGCC	5 cut(s)	101, 710, 808, 979, 1036
BshTI	ACCGGT	2 cut(s)	343, 660
BsiEI	CGRYCG	1 cut(s)	1041
BsiHKCI	CYCGRG	1 cut(s)	1224
BsiSI	CCGG	4 cut(s)	344, 661, 865, 1037
BslFI	GGGAC	4 cut(s)	382, 492, 508, 725
BsmFI	GGGAC	4 cut(s)	382, 492, 508, 725
BsnI	GGCC	5 cut(s)	101, 710, 808, 979, 1036
BsoBI	CYCGRG	1 cut(s)	1224
Bsp1286I	GDGCHC	1 cut(s)	1358
Bsp143I	GATC	6 cut(s)	120, 273, 280, 1056, 1162, 1341
BspANI	GGCC	5 cut(s)	101, 710, 808, 979, 1036
BspCNI	CTCAG	2 cut(s)	530, 988
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	5 cut(s)	100, 204, 339, 800, 869
BspPI	GGATC	2 cut(s)	1157, 1336
BsrDI	GCAATG	3 cut(s)	218, 840, 1116
BsrFI	RCCGGY	3 cut(s)	343, 660, 1036
BsrI	ACTGG	3 cut(s)	269, 802, 1198
BssAI	RCCGGY	3 cut(s)	343, 660, 1036
BssECI	CCNNGG	3 cut(s)	781, 948, 1017
BssMI	GATC	6 cut(s)	120, 273, 280, 1056, 1162, 1341
BssT1I	CCWWGG	1 cut(s)	948
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	4 cut(s)	89, 592, 961, 975
BstC8I	GCNNGC	1 cut(s)	917
BstDEI	CTNAG	6 cut(s)	372, 416, 461, 517, 584, 996
BstDSI	CCRYGG	1 cut(s)	1017
BstEII	GGTNACC	2 cut(s)	31, 74
BstF5I	GGATG	4 cut(s)	33, 104, 370, 547
BstFNI	CGCG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	3 cut(s)	95, 225, 247
BstKTI	GATC	6 cut(s)	123, 276, 283, 1059, 1165, 1344
BstMBI	GATC	6 cut(s)	120, 273, 280, 1056, 1162, 1341
BstMCI	CGRYCG	1 cut(s)	1041
BstMWI	GCNNNNNNNGC	1 cut(s)	805
BstNI	CCWGG	1 cut(s)	857
BstNSI	RCATGY	1 cut(s)	1206
BstPI	GGTNACC	2 cut(s)	31, 74
BstSCI	CCNGG	1 cut(s)	855
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	842, 980
BstV2I	GAAGAC	1 cut(s)	886
BstX2I	RGATCY	1 cut(s)	1341
BstYI	RGATCY	1 cut(s)	1341
BsuRI	GGCC	5 cut(s)	101, 710, 808, 979, 1036
BtgI	CCRYGG	1 cut(s)	1017
BtsCI	GGATG	4 cut(s)	33, 104, 370, 547
BtsI	GCAGTG	1 cut(s)	1044
BtsIMutI	CAGTG	5 cut(s)	276, 809, 912, 980, 1044
Cac8I	GCNNGC	1 cut(s)	917
CfoI	GCGC	3 cut(s)	95, 225, 247
Cfr10I	RCCGGY	3 cut(s)	343, 660, 1036
Cfr13I	GGNCC	2 cut(s)	99, 1034
CseI	GACGC	1 cut(s)	1240
Csp6I	GTAC	4 cut(s)	289, 535, 588, 632
CspAI	ACCGGT	2 cut(s)	343, 660
CviAII	CATG	7 cut(s)	487, 1024, 1060, 1115, 1203, 1211, 1351
CviQI	GTAC	4 cut(s)	289, 535, 588, 632
DdeI	CTNAG	6 cut(s)	372, 416, 461, 517, 584, 996
DpnI	GATC	6 cut(s)	122, 275, 282, 1058, 1164, 1343
DpnII	GATC	6 cut(s)	120, 273, 280, 1056, 1162, 1341
EaeI	YGGCCR	1 cut(s)	806
Eco130I	CCWWGG	1 cut(s)	948
Eco24I	GRGCYC	1 cut(s)	1358
Eco32I	GATATC	1 cut(s)	1233
Eco57I	CTGAAG	2 cut(s)	155, 1197
Eco88I	CYCGRG	1 cut(s)	1224
Eco91I	GGTNACC	2 cut(s)	31, 74
EcoO109I	RGGNCCY	1 cut(s)	99
EcoO65I	GGTNACC	2 cut(s)	31, 74
EcoRI	GAATTC	1 cut(s)	763
EcoRII	CCWGG	1 cut(s)	855
EcoRV	GATATC	1 cut(s)	1233
EcoT14I	CCWWGG	1 cut(s)	948
EcoT22I	ATGCAT	1 cut(s)	1116
EcoT38I	GRGCYC	1 cut(s)	1358
ErhI	CCWWGG	1 cut(s)	948
FaeI	CATG	7 cut(s)	490, 1027, 1063, 1118, 1206, 1214, 1354
FaqI	GGGAC	4 cut(s)	382, 492, 508, 725
FatI	CATG	7 cut(s)	486, 1023, 1059, 1114, 1202, 1210, 1350
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	831, 969
FokI	GGATG	4 cut(s)	40, 91, 377, 554
FriOI	GRGCYC	1 cut(s)	1358
Fsp4HI	GCNGC	2 cut(s)	831, 969
FspBI	CTAG	5 cut(s)	69, 477, 504, 1007, 1248
GlaI	GCGC	3 cut(s)	94, 224, 246
GluI	GCNGC	2 cut(s)	831, 969
GsaI	CCCAGC	1 cut(s)	99
GsuI	CTGGAG	2 cut(s)	551, 785
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	5 cut(s)	101, 710, 808, 979, 1036
HapII	CCGG	4 cut(s)	344, 661, 865, 1037
HgaI	GACGC	1 cut(s)	1240
HhaI	GCGC	3 cut(s)	95, 225, 247
Hin1II	CATG	7 cut(s)	490, 1027, 1063, 1118, 1206, 1214, 1354
Hin6I	GCGC	3 cut(s)	93, 223, 245
HinP1I	GCGC	3 cut(s)	93, 223, 245
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	3 cut(s)	500, 545, 891
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	4 cut(s)	344, 661, 865, 1037
HphI	GGTGA	6 cut(s)	25, 638, 934, 1064, 1132, 1266
Hpy166II	GTNNAC	3 cut(s)	388, 699, 1172
Hpy188I	TCNGA	4 cut(s)	611, 727, 1150, 1239
Hpy188III	TCNNGA	7 cut(s)	233, 524, 644, 733, 760, 987, 1224
Hpy8I	GTNNAC	3 cut(s)	388, 699, 1172
Hpy99I	CGWCG	1 cut(s)	1256
HpyAV	CCTTC	7 cut(s)	146, 328, 448, 520, 781, 931, 1155
HpyCH4III	ACNGT	4 cut(s)	89, 592, 961, 975
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	4 cut(s)	845, 968, 1063, 1114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	805
HpyF3I	CTNAG	6 cut(s)	372, 416, 461, 517, 584, 996
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	7 cut(s)	490, 1027, 1063, 1118, 1206, 1214, 1354
HspAI	GCGC	3 cut(s)	93, 223, 245
Ksp22I	TGATCA	1 cut(s)	273
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	6 cut(s)	120, 273, 280, 1056, 1162, 1341
LmnI	GCTCC	2 cut(s)	337, 804
Lsp1109I	GCAGC	2 cut(s)	842, 980
MaeI	CTAG	5 cut(s)	69, 477, 504, 1007, 1248
MaeII	ACGT	1 cut(s)	630
MalI	GATC	6 cut(s)	122, 275, 282, 1058, 1164, 1343
MboI	GATC	6 cut(s)	120, 273, 280, 1056, 1162, 1341
MboII	GAAGA	2 cut(s)	886, 1212
MflI	RGATCY	1 cut(s)	1341
MhlI	GDGCHC	1 cut(s)	1358
MlsI	TGGCCA	1 cut(s)	808
MluCI	AATT	8 cut(s)	263, 357, 653, 752, 763, 1183, 1216, 1240
MluNI	TGGCCA	1 cut(s)	808
MlyI	GAGTC	2 cut(s)	539, 900
MmeI	TCCRAC	3 cut(s)	148, 866, 1350
Mox20I	TGGCCA	1 cut(s)	808
Mph1103I	ATGCAT	1 cut(s)	1116
MroXI	GAANNNNTTC	2 cut(s)	1089, 1219
MscI	TGGCCA	1 cut(s)	808
MseI	TTAA	7 cut(s)	387, 570, 956, 1244, 1292, 1332, 1361
MslI	CAYNNNNRTG	1 cut(s)	1098
Msp20I	TGGCCA	1 cut(s)	808
MspI	CCGG	4 cut(s)	344, 661, 865, 1037
MspR9I	CCNGG	1 cut(s)	857
MvaI	CCWGG	1 cut(s)	857
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	805
NdeII	GATC	6 cut(s)	120, 273, 280, 1056, 1162, 1341
NlaIII	CATG	7 cut(s)	490, 1027, 1063, 1118, 1206, 1214, 1354
NlaIV	GGNNCC	5 cut(s)	100, 204, 339, 800, 869
NmeAIII	GCCGAG	1 cut(s)	806
NmuCI	GTSAC	8 cut(s)	31, 142, 626, 715, 816, 940, 1042, 1266
NsiI	ATGCAT	1 cut(s)	1116
NspI	RCATGY	1 cut(s)	1206
PaeR7I	CTCGAG	1 cut(s)	1224
PciI	ACATGT	1 cut(s)	1202
PdmI	GAANNNNTTC	2 cut(s)	1089, 1219
PfeI	GAWTC	1 cut(s)	500
PflMI	CCANNNNNTGG	2 cut(s)	361, 1188
PfoI	TCCNGGA	1 cut(s)	855
PinAI	ACCGGT	2 cut(s)	343, 660
PkrI	GCNGC	2 cut(s)	832, 970
PleI	GAGTC	2 cut(s)	539, 899
PpsI	GAGTC	2 cut(s)	539, 899
PscI	ACATGT	1 cut(s)	1202
Psp6I	CCWGG	1 cut(s)	855
PspEI	GGTNACC	2 cut(s)	31, 74
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	5 cut(s)	100, 204, 339, 800, 869
PspPI	GGNCC	2 cut(s)	99, 1034
PsuI	RGATCY	1 cut(s)	1341
RsaI	GTAC	4 cut(s)	290, 536, 589, 633
RsaNI	GTAC	4 cut(s)	289, 535, 588, 632
RseI	CAYNNNNRTG	1 cut(s)	1098
SaqAI	TTAA	7 cut(s)	387, 570, 956, 1244, 1292, 1332, 1361
SatI	GCNGC	2 cut(s)	831, 969
Sau3AI	GATC	6 cut(s)	120, 273, 280, 1056, 1162, 1341
Sau96I	GGNCC	2 cut(s)	99, 1034
ScaI	AGTACT	2 cut(s)	536, 589
SchI	GAGTC	2 cut(s)	539, 900
ScrFI	CCNGG	1 cut(s)	857
SduI	GDGCHC	1 cut(s)	1358
Sfr274I	CTCGAG	1 cut(s)	1224
SgrAI	CRCCGGYG	1 cut(s)	343
SlaI	CTCGAG	1 cut(s)	1224
SmiMI	CAYNNNNRTG	1 cut(s)	1098
SmlI	CTYRAG	2 cut(s)	524, 1224
SmoI	CTYRAG	2 cut(s)	524, 1224
Sse9I	AATT	8 cut(s)	263, 357, 653, 752, 763, 1183, 1216, 1240
SspI	AATATT	1 cut(s)	254
SspMI	CTAG	5 cut(s)	69, 477, 504, 1007, 1248
StyD4I	CCNGG	1 cut(s)	855
StyI	CCWWGG	1 cut(s)	948
TaaI	ACNGT	4 cut(s)	89, 592, 961, 975
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	4 cut(s)	283, 759, 1104, 1225
TasI	AATT	8 cut(s)	263, 357, 653, 752, 763, 1183, 1216, 1240
TatI	WGTACW	2 cut(s)	534, 587
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	7 cut(s)	387, 570, 956, 1244, 1292, 1332, 1361
Tru9I	TTAA	7 cut(s)	387, 570, 956, 1244, 1292, 1332, 1361
TscAI	CASTG	5 cut(s)	276, 809, 912, 980, 1051
TseFI	GTSAC	8 cut(s)	31, 142, 626, 715, 816, 940, 1042, 1266
TseI	GCWGC	2 cut(s)	830, 968
Tsp45I	GTSAC	8 cut(s)	31, 142, 626, 715, 816, 940, 1042, 1266
TspDTI	ATGAA	3 cut(s)	165, 276, 502
TspRI	CASTG	5 cut(s)	276, 809, 912, 980, 1051
Van91I	CCANNNNNTGG	2 cut(s)	361, 1188
XapI	RAATTY	5 cut(s)	263, 653, 763, 1216, 1240
XceI	RCATGY	1 cut(s)	1206
XcmI	CCANNNNNNNNNTGG	3 cut(s)	362, 1149, 1313
XhoI	CTCGAG	1 cut(s)	1224
XmnI	GAANNNNTTC	2 cut(s)	1089, 1219
XspI	CTAG	5 cut(s)	69, 477, 504, 1007, 1248
ZrmI	AGTACT	2 cut(s)	536, 589
Zsp2I	ATGCAT	1 cut(s)	1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.