RchiOBHm_Chr6g0257071

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
12340255 .. 12344065
3811 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23059

Sequence Viewer

Length: 1575 bp
ATGTTTTGGCTTTTTTTCTGGGCAAAGCTTTTGTGCCTTCCCAGGACAAACATGTCCCTCTGGCTCCTACTCCTATGGATGGTCACCATTCCTCTCCAAGCCAACTCTCAAAGTAACCCTAGAGGTTACCTCCTAAACTGTGGCGCTGGGGCCTCATCCAATAATGATGTGATCGTAGGTAGCCTGAAGTATGTCACAGATGAAGGTTACATATCAGTTGGAAAAACGAGCAACATCAAGCAGAAAGACTTGGTTCCCATACTCACTACATTGCGCTATTTTCCAGACAAGTCTGGGCGAAAATATTGTTATGAATTTCCAGTGATCAAAGATGGAAAGTACCTTGTGAGGACGACTTACTATTATGGTGGTTTTGATGGTGGGAAGGAGCCACCGGTGTTTGACCAAATCGTGGATGGGACAAAGTGGAGTGTAGTTAACACAACAGAGGACTTTGCCAATGGACTTAGCTCGTATTATGAGATGGTGGTGTCGGCAAAGGGGAAGGAACTAAGTGTGTGTCTTGCTAGGAATAACATGACGGGGACTGATTCTAGTCCCTTCATCTCAGCTCTTGAGCTGGAGTACTTGGATGACTCGGTGTATAACTCCACCGATTTTAACAAGTATGGACTTAGTACTGTGGCAAGGGCGAACTTCGGAACTCCTACTAATGGTGACGTAATTGGCTTTCCAGATGACAAATTCAACCGGTTATGGCAACCATTCAAGGACAAGAACCCTGTGTCCACTAACAAGGCCGATGTCACTCCCTCTGATTTCTGGAATGTCCCACCAGCAAAATTATTCGAGAATTCTATCACAACAAGCCGAGGGAAGGAACTTCAGCTCCAGTGGCCACCTGTGTCACTCCCCAACGCAGCTTACTACATTGCATTGTATTTCCAGGACAACCGGAACCCAAGCCCTTTTAGTTGGAGAGTCTTCAATGTTTCAGTGAATGGCAAGCCCTTCTCTGGCAATCTCAATGTCACCACCAAGGGTTTAACAGTTTATGCAGCACAGTGGCCTCTGTCTGGAAAGACTGAGATTGTCCTAGCCCCTGCCGGGGGCATGGCTGTTGGGCCGGTCATCACTGCTGGTGAGATCATGCAGATTTTTCCTCTTGGATTAGCAACGCTCCACAGAGATGTCGAGGCAATGCATGAGGTGAAAAGGAGTTTTGAGAACCCACCTTCCGATTGGAGTGGCGATCCTTGTTTGCCTGAAGCCAATTCTTGGACTGGTGTTACATGTTCTCATGGAAATTCTTCTCGAGTGATATCTCTGAATTTAACTAGCGTCGGGCTATCTGGGTCACTATCACCAAACATGGCAAACTTAACTGCCCTACACCATATTTGGCTTGGCGATAACAAACTTAAAGGCGAGATCCCAGACATGGGCTCATTAAAGGAGTTGGAAACTTTGCATCTGGAGAACAACCAGCTTGAAGGACAAATCCCTGAATCATTAGGCAAACTTCCAAAATTACGTGAGATATATCTTCAGAATAACAAACTTAAGGGCAATGTGCCTGACACGCGACAAACGAAGAAAATACAGATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

524

Amino Acids

58.09

Weight (kDa)

7.0

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 45 - 372 4.1e-63 Malectin-like domain
LRR_8 PF13855 456 - 508 1.7e-06 Leucine rich repeat
LRR_4 PF12799 473 - 509 7.4e-07 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccB7I CCANNNNNTGG 2 cut(s) 412, 1239
AccII CGCG 1 cut(s) 1546
AclWI GGATC 2 cut(s) 1208, 1387
AcoI YGGCCR 1 cut(s) 857
AcsI RAATTY 5 cut(s) 314, 704, 814, 1267, 1291
AcuI CTGAAG 4 cut(s) 206, 830, 1248, 1493
AfaI GTAC 3 cut(s) 341, 587, 640
AflII CTTAAG 1 cut(s) 1523
AflIII ACRYGT 2 cut(s) 51, 1253
AgeI ACCGGT 2 cut(s) 394, 711
AgsI TTSAA 4 cut(s) 709, 730, 949, 1454
AjnI CCWGG 2 cut(s) 41, 906
AloI GAACNNNNNNTCC 6 cut(s) 731, 763, 834, 866, 1181, 1213
AluBI AGCT 7 cut(s) 28, 471, 572, 580, 850, 884, 1450
AluI AGCT 7 cut(s) 28, 471, 572, 580, 850, 884, 1450
AlwI GGATC 2 cut(s) 1208, 1387
Ama87I CYCGRG 1 cut(s) 1275
AoxI GGCC 5 cut(s) 150, 759, 857, 1028, 1085
ApeKI GCWGC 2 cut(s) 881, 1019
ApoI RAATTY 5 cut(s) 314, 704, 814, 1267, 1291
AsiGI ACCGGT 2 cut(s) 394, 711
Asp700I GAANNNNTTC 1 cut(s) 1270
AspLEI GCGC 2 cut(s) 146, 276
AspS9I GGNCC 2 cut(s) 150, 1085
AsuC2I CCSGG 1 cut(s) 1069
AsuHPI GGTGA 6 cut(s) 76, 689, 985, 1115, 1183, 1317
AvaI CYCGRG 1 cut(s) 1275
BalI TGGCCA 1 cut(s) 859
BanII GRGCYC 1 cut(s) 1409
BbsI GAAGAC 1 cut(s) 937
BbvI GCAGC 2 cut(s) 893, 1031
BccI CCATC 5 cut(s) 73, 326, 371, 410, 478
BciT130I CCWGG 2 cut(s) 43, 908
BclI TGATCA 1 cut(s) 324
BcnI CCSGG 1 cut(s) 1069
BfaI CTAG 5 cut(s) 120, 528, 555, 1058, 1299
BfoI RGCGCY 1 cut(s) 147
BfrI CTTAAG 1 cut(s) 1523
BisI GCNGC 2 cut(s) 882, 1020
BlsI GCNGC 2 cut(s) 883, 1021
BmcAI AGTACT 2 cut(s) 587, 640
Bme1390I CCNGG 3 cut(s) 43, 908, 1069
BmeT110I CYCGRG 1 cut(s) 1275
BmgT120I GGNCC 2 cut(s) 150, 1085
BmiI GGNNCC 5 cut(s) 65, 151, 255, 390, 920
BmrFI CCNGG 3 cut(s) 43, 908, 1069
BmsI GCATC 1 cut(s) 1441
BpiI GAAGAC 1 cut(s) 937
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BpmI CTGGAG 3 cut(s) 602, 836, 1457
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 1069
BsaAI YACGTR 1 cut(s) 1496
BsaJI CCNNGG 4 cut(s) 41, 832, 999, 1068
BsaWI WCCGGW 3 cut(s) 394, 711, 915
BsaXI ACNNNNNCTCC 2 cut(s) 834, 864
Bse118I RCCGGY 3 cut(s) 394, 711, 1087
Bse1I ACTGG 3 cut(s) 320, 853, 1249
Bse3DI GCAATG 4 cut(s) 269, 891, 1167, 1537
BseBI CCWGG 2 cut(s) 43, 908
BseDI CCNNGG 4 cut(s) 41, 832, 999, 1068
BseGI GGATG 4 cut(s) 84, 155, 421, 598
BseMI GCAATG 4 cut(s) 269, 891, 1167, 1537
BseMII CTCAG 2 cut(s) 582, 1038
BseNI ACTGG 3 cut(s) 320, 853, 1249
BseXI GCAGC 2 cut(s) 893, 1031
BseYI CCCAGC 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 1546
BshFI GGCC 5 cut(s) 152, 761, 859, 1030, 1087
BshTI ACCGGT 2 cut(s) 394, 711
BsiHKCI CYCGRG 1 cut(s) 1275
BsiSI CCGG 5 cut(s) 395, 712, 916, 1068, 1088
BslFI GGGAC 5 cut(s) 40, 433, 543, 559, 776
BsmFI GGGAC 5 cut(s) 40, 433, 543, 559, 776
BsnI GGCC 5 cut(s) 152, 761, 859, 1030, 1087
BsoBI CYCGRG 1 cut(s) 1275
Bsp1286I GDGCHC 1 cut(s) 1409
Bsp143I GATC 6 cut(s) 171, 324, 1107, 1213, 1392, 1566
BspANI GGCC 5 cut(s) 152, 761, 859, 1030, 1087
BspCNI CTCAG 2 cut(s) 581, 1039
BspFNI CGCG 1 cut(s) 1546
BspLI GGNNCC 5 cut(s) 65, 151, 255, 390, 920
BspPI GGATC 2 cut(s) 1208, 1387
BspTI CTTAAG 1 cut(s) 1523
BsrDI GCAATG 4 cut(s) 269, 891, 1167, 1537
BsrFI RCCGGY 3 cut(s) 394, 711, 1087
BsrI ACTGG 3 cut(s) 320, 853, 1249
BssAI RCCGGY 3 cut(s) 394, 711, 1087
BssECI CCNNGG 4 cut(s) 41, 832, 999, 1068
BssMI GATC 6 cut(s) 171, 324, 1107, 1213, 1392, 1566
BssT1I CCWWGG 1 cut(s) 999
Bst2UI CCWGG 2 cut(s) 43, 908
Bst4CI ACNGT 4 cut(s) 140, 643, 1012, 1026
BstAFI CTTAAG 1 cut(s) 1523
BstBAI YACGTR 1 cut(s) 1496
BstC8I GCNNGC 1 cut(s) 968
BstDEI CTNAG 5 cut(s) 467, 512, 568, 635, 1047
BstEII GGTNACC 2 cut(s) 82, 125
BstF5I GGATG 4 cut(s) 84, 155, 421, 598
BstFNI CGCG 1 cut(s) 1546
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 146, 276
BstKTI GATC 6 cut(s) 174, 327, 1110, 1216, 1395, 1569
BstMBI GATC 6 cut(s) 171, 324, 1107, 1213, 1392, 1566
BstMWI GCNNNNNNNGC 2 cut(s) 856, 1543
BstNI CCWGG 2 cut(s) 43, 908
BstNSI RCATGY 2 cut(s) 55, 1257
BstPI GGTNACC 2 cut(s) 82, 125
BstSCI CCNGG 3 cut(s) 41, 906, 1067
BstUI CGCG 1 cut(s) 1546
BstV1I GCAGC 2 cut(s) 893, 1031
BstV2I GAAGAC 1 cut(s) 937
BstX2I RGATCY 1 cut(s) 1392
BstYI RGATCY 1 cut(s) 1392
BsuRI GGCC 5 cut(s) 152, 761, 859, 1030, 1087
BtsCI GGATG 4 cut(s) 84, 155, 421, 598
BtsI GCAGTG 1 cut(s) 1095
BtsIMutI CAGTG 5 cut(s) 327, 860, 963, 1031, 1095
Cac8I GCNNGC 1 cut(s) 968
CfoI GCGC 2 cut(s) 146, 276
Cfr10I RCCGGY 3 cut(s) 394, 711, 1087
Cfr13I GGNCC 2 cut(s) 150, 1085
CseI GACGC 1 cut(s) 1291
Csp6I GTAC 3 cut(s) 340, 586, 639
CspAI ACCGGT 2 cut(s) 394, 711
CviAII CATG 9 cut(s) 52, 538, 1075, 1111, 1166, 1254, 1262, 1333, 1402
CviQI GTAC 3 cut(s) 340, 586, 639
DdeI CTNAG 5 cut(s) 467, 512, 568, 635, 1047
DpnI GATC 6 cut(s) 173, 326, 1109, 1215, 1394, 1568
DpnII GATC 6 cut(s) 171, 324, 1107, 1213, 1392, 1566
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 857
Eco130I CCWWGG 1 cut(s) 999
Eco24I GRGCYC 1 cut(s) 1409
Eco32I GATATC 1 cut(s) 1284
Eco57I CTGAAG 4 cut(s) 206, 830, 1248, 1493
Eco88I CYCGRG 1 cut(s) 1275
Eco91I GGTNACC 2 cut(s) 82, 125
EcoO109I RGGNCCY 1 cut(s) 150
EcoO65I GGTNACC 2 cut(s) 82, 125
EcoRI GAATTC 1 cut(s) 814
EcoRII CCWGG 2 cut(s) 41, 906
EcoRV GATATC 1 cut(s) 1284
EcoT14I CCWWGG 1 cut(s) 999
EcoT22I ATGCAT 1 cut(s) 1167
EcoT38I GRGCYC 1 cut(s) 1409
ErhI CCWWGG 1 cut(s) 999
FaeI CATG 9 cut(s) 55, 541, 1078, 1114, 1169, 1257, 1265, 1336, 1405
FaqI GGGAC 5 cut(s) 40, 433, 543, 559, 776
FatI CATG 9 cut(s) 51, 537, 1074, 1110, 1165, 1253, 1261, 1332, 1401
FbaI TGATCA 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 882, 1020
FokI GGATG 4 cut(s) 91, 142, 428, 605
FriOI GRGCYC 1 cut(s) 1409
Fsp4HI GCNGC 2 cut(s) 882, 1020
FspBI CTAG 5 cut(s) 120, 528, 555, 1058, 1299
GlaI GCGC 2 cut(s) 145, 275
GluI GCNGC 2 cut(s) 882, 1020
GsaI CCCAGC 1 cut(s) 150
GsuI CTGGAG 3 cut(s) 602, 836, 1457
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 5 cut(s) 152, 761, 859, 1030, 1087
HapII CCGG 5 cut(s) 395, 712, 916, 1068, 1088
HgaI GACGC 1 cut(s) 1291
HhaI GCGC 2 cut(s) 146, 276
Hin1II CATG 9 cut(s) 55, 541, 1078, 1114, 1169, 1257, 1265, 1336, 1405
Hin6I GCGC 2 cut(s) 144, 274
HinP1I GCGC 2 cut(s) 144, 274
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 4 cut(s) 551, 596, 942, 1469
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 5 cut(s) 395, 712, 916, 1068, 1088
HphI GGTGA 6 cut(s) 76, 689, 985, 1115, 1183, 1317
Hpy166II GTNNAC 2 cut(s) 439, 750
Hpy188I TCNGA 5 cut(s) 662, 778, 1201, 1290, 1512
Hpy188III TCNNGA 8 cut(s) 284, 575, 695, 784, 811, 1038, 1275, 1436
Hpy8I GTNNAC 2 cut(s) 439, 750
Hpy99I CGWCG 1 cut(s) 1307
HpyAV CCTTC 9 cut(s) 47, 197, 379, 499, 571, 832, 982, 1206, 1448
HpyCH4III ACNGT 4 cut(s) 140, 643, 1012, 1026
HpyCH4IV ACGT 2 cut(s) 681, 1495
HpyCH4V TGCA 5 cut(s) 896, 1019, 1114, 1165, 1432
HpyF10VI GCNNNNNNNGC 2 cut(s) 856, 1543
HpyF3I CTNAG 5 cut(s) 467, 512, 568, 635, 1047
HpySE526I ACGT 2 cut(s) 681, 1495
Hsp92II CATG 9 cut(s) 55, 541, 1078, 1114, 1169, 1257, 1265, 1336, 1405
HspAI GCGC 2 cut(s) 144, 274
Ksp22I TGATCA 1 cut(s) 324
KspAI GTTAAC 1 cut(s) 439
Kzo9I GATC 6 cut(s) 171, 324, 1107, 1213, 1392, 1566
LmnI GCTCC 4 cut(s) 69, 388, 855, 1146
Lsp1109I GCAGC 2 cut(s) 893, 1031
LweI GCATC 1 cut(s) 1441
MaeI CTAG 5 cut(s) 120, 528, 555, 1058, 1299
MaeII ACGT 2 cut(s) 681, 1495
MalI GATC 6 cut(s) 173, 326, 1109, 1215, 1394, 1568
MboI GATC 6 cut(s) 171, 324, 1107, 1213, 1392, 1566
MboII GAAGA 4 cut(s) 937, 1263, 1499, 1567
MflI RGATCY 1 cut(s) 1392
MhlI GDGCHC 1 cut(s) 1409
MlsI TGGCCA 1 cut(s) 859
MluCI AATT 9 cut(s) 314, 684, 704, 803, 814, 1234, 1267, 1291, 1490
MluNI TGGCCA 1 cut(s) 859
MlyI GAGTC 2 cut(s) 590, 951
MmeI TCCRAC 3 cut(s) 199, 917, 1401
Mox20I TGGCCA 1 cut(s) 859
Mph1103I ATGCAT 1 cut(s) 1167
MroXI GAANNNNTTC 1 cut(s) 1270
MscI TGGCCA 1 cut(s) 859
MseI TTAA 8 cut(s) 438, 621, 1007, 1295, 1343, 1383, 1412, 1524
MslI CAYNNNNRTG 1 cut(s) 1149
Msp20I TGGCCA 1 cut(s) 859
MspCI CTTAAG 1 cut(s) 1523
MspI CCGG 5 cut(s) 395, 712, 916, 1068, 1088
MspR9I CCNGG 3 cut(s) 43, 908, 1069
MvaI CCWGG 2 cut(s) 43, 908
MvnI CGCG 1 cut(s) 1546
MwoI GCNNNNNNNGC 2 cut(s) 856, 1543
NciI CCSGG 1 cut(s) 1069
NdeII GATC 6 cut(s) 171, 324, 1107, 1213, 1392, 1566
NlaIII CATG 9 cut(s) 55, 541, 1078, 1114, 1169, 1257, 1265, 1336, 1405
NlaIV GGNNCC 5 cut(s) 65, 151, 255, 390, 920
NmeAIII GCCGAG 1 cut(s) 857
NmuCI GTSAC 7 cut(s) 82, 193, 677, 766, 867, 991, 1317
NsiI ATGCAT 1 cut(s) 1167
NspI RCATGY 2 cut(s) 55, 1257
PaeR7I CTCGAG 1 cut(s) 1275
PciI ACATGT 2 cut(s) 51, 1253
PcsI WCGNNNNNNNCGW 1 cut(s) 1550
PdmI GAANNNNTTC 1 cut(s) 1270
PfeI GAWTC 2 cut(s) 551, 1469
PflMI CCANNNNNTGG 2 cut(s) 412, 1239
PfoI TCCNGGA 1 cut(s) 906
PinAI ACCGGT 2 cut(s) 394, 711
PkrI GCNGC 2 cut(s) 883, 1021
PleI GAGTC 2 cut(s) 590, 950
PpsI GAGTC 2 cut(s) 590, 950
Ppu21I YACGTR 1 cut(s) 1496
PscI ACATGT 2 cut(s) 51, 1253
Psp6I CCWGG 2 cut(s) 41, 906
PspEI GGTNACC 2 cut(s) 82, 125
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 2 cut(s) 41, 906
PspN4I GGNNCC 5 cut(s) 65, 151, 255, 390, 920
PspPI GGNCC 2 cut(s) 150, 1085
PsuI RGATCY 1 cut(s) 1392
RsaI GTAC 3 cut(s) 341, 587, 640
RsaNI GTAC 3 cut(s) 340, 586, 639
RseI CAYNNNNRTG 1 cut(s) 1149
SaqAI TTAA 8 cut(s) 438, 621, 1007, 1295, 1343, 1383, 1412, 1524
SatI GCNGC 2 cut(s) 882, 1020
Sau3AI GATC 6 cut(s) 171, 324, 1107, 1213, 1392, 1566
Sau96I GGNCC 2 cut(s) 150, 1085
ScaI AGTACT 2 cut(s) 587, 640
SchI GAGTC 2 cut(s) 590, 951
ScrFI CCNGG 3 cut(s) 43, 908, 1069
SduI GDGCHC 1 cut(s) 1409
SfaNI GCATC 1 cut(s) 1441
Sfr274I CTCGAG 1 cut(s) 1275
SgrAI CRCCGGYG 1 cut(s) 394
SlaI CTCGAG 1 cut(s) 1275
SmiMI CAYNNNNRTG 1 cut(s) 1149
SmlI CTYRAG 3 cut(s) 575, 1275, 1523
SmoI CTYRAG 3 cut(s) 575, 1275, 1523
Sse9I AATT 9 cut(s) 314, 684, 704, 803, 814, 1234, 1267, 1291, 1490
SspI AATATT 1 cut(s) 305
SspMI CTAG 5 cut(s) 120, 528, 555, 1058, 1299
StyD4I CCNGG 3 cut(s) 41, 906, 1067
StyI CCWWGG 1 cut(s) 999
TaaI ACNGT 4 cut(s) 140, 643, 1012, 1026
TaiI ACGT 2 cut(s) 684, 1498
TaqI TCGA 3 cut(s) 810, 1155, 1276
TasI AATT 9 cut(s) 314, 684, 704, 803, 814, 1234, 1267, 1291, 1490
TatI WGTACW 2 cut(s) 585, 638
TfiI GAWTC 2 cut(s) 551, 1469
Tru1I TTAA 8 cut(s) 438, 621, 1007, 1295, 1343, 1383, 1412, 1524
Tru9I TTAA 8 cut(s) 438, 621, 1007, 1295, 1343, 1383, 1412, 1524
TscAI CASTG 5 cut(s) 327, 860, 963, 1031, 1102
TseFI GTSAC 7 cut(s) 82, 193, 677, 766, 867, 991, 1317
TseI GCWGC 2 cut(s) 881, 1019
Tsp45I GTSAC 7 cut(s) 82, 193, 677, 766, 867, 991, 1317
TspDTI ATGAA 3 cut(s) 216, 327, 553
TspRI CASTG 5 cut(s) 327, 860, 963, 1031, 1102
Van91I CCANNNNNTGG 2 cut(s) 412, 1239
Vha464I CTTAAG 1 cut(s) 1523
XapI RAATTY 5 cut(s) 314, 704, 814, 1267, 1291
XceI RCATGY 2 cut(s) 55, 1257
XcmI CCANNNNNNNNNTGG 3 cut(s) 413, 1200, 1364
XhoI CTCGAG 1 cut(s) 1275
XmnI GAANNNNTTC 1 cut(s) 1270
XspI CTAG 5 cut(s) 120, 528, 555, 1058, 1299
ZrmI AGTACT 2 cut(s) 587, 640
Zsp2I ATGCAT 1 cut(s) 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.