Rw6G008030

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
13647715 .. 13651615
3901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008030.1

Sequence Viewer

Length: 1524 bp
ATGTCCCTCTGGCTCTTACTCCTATGGATGGTCACCATTCCTCTCCAAGCCAACTCTCAAAGTAACCCTAGAGGTTACCTCCTAAACTGTGGCGCTGGGGCCTCATCCAATAATGATGTGATCGTAGGTAGCCTGAAGTATGTCACAGATGAAGGTTACATATCAGTTGGAAAAACGAGCAACATCAAGCAGAAAGACTTGGTTCCCATACTCACTACATTGCGCTATTTTCCAGACAAGTCTGCGCGAAAATATTGTTATGAATTTCCAGTGATCAAAGATGGAAAGTACCTTGTGAGGACTACTTACTATTATGGTGGTTTTGATGGTGGGAAGGAGCCACCGGTGTTTGACCAAATTGTGGATGGGACTAAGTGGAGTGTAGTTAACACAACAGAGGACTTTGCCAATGGACTTAGCTCGTATTATGAGATGGTGGTGTCGGCAAAGGGGAAGGAACTAAGTGTGTGTCTTGCTAGGAATAACATGACGGGGACTGATTCTAGTCCCTTCATCTCAGCTCTTGAGCTGGAGTACTTGGATGACTCGGTGTATAACTCCACCGATTTTAACAAGTATGGACTTAGTACTGTGGCAAGGGCAAACTTCGGAACTCCTACTAATGGTGACGTAATTGGCTTTCCAGATGACAAATTCAACCGGTTATGGCAACCATTCAAGGACAAGAACCCTGTGTCCACTAACAAGGCCGATGTCACTCCCTCTGATTTCTGGAATGTCCCACCAGCAAAATTATTCGAGAATTCTATCACAACAAGCCGAGGGAAGGAACTTCAGCTCCAGTGGCCACCTGTGTCACTCCCCAACGCAGTTTACTACATTGCATTGTATTTCCAGGACAACCGGAACCCAAGCCCTTTTAGTTGGAGAGTCTTCAATGTTTCAGTGAATGGCAAGCCCTTCTCTGGCAATCTCAATGTCACCACCAAGGGTTTAACAGTTTATGCAGCACAGTGGCCTCTGTCTGGAAAGACTGAGATTGTCCTAGCCCCTGCCGTGGGCATGGCTGTTGGGCCGGTCGTCACTGCTGGTGAGATCATGCAGATTTTTCCTCTTGGATTAGAAACGCTCCACAGAGATGTCGAGGCAATGCATGAGGTGAAAAGGAGTTTTGACAACCCACCTTCCGATTGGAGTGGCGATCCTTGTTTACCTGAAGCCAATTCTTGGACTGGTGTTACATGTTCTCATGGAAATTCTTCTCGAGTGATATCTCTGAATTTAACTAGCGTCGGGCTATCTGGGTCACTATCACCAAACATAGCAAACTTAACTGCCCTACACCATATTTGGCTTGGCGATAACAAACTTAAAGGCGAGATCCCAGACATGGGCTCATTAAAGGAGTTGGAAACTTTGCATCTGGAGAACAACCAGCTTGAAGGACAAATCCCTGAATCATTAGGCAAACTTCCAAAATTACGTGAGATATATCTTCAGAATAACAAACTTAAGGGCAATGTGCCTGACACGCGACAAACGAAGAAAATACAGATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

507

Amino Acids

56.02

Weight (kDa)

6.14

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 28 - 355 5.7e-62 Malectin-like domain
LRRNT_2 PF08263 366 - 403 4.1e-06 Leucine rich repeat N-terminal domain
LRR_8 PF13855 449 - 491 2.1e-06 Leucine rich repeat
LRR_4 PF12799 456 - 492 7.1e-07 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 361, 1188
AccII CGCG 2 cut(s) 247, 1495
AclWI GGATC 2 cut(s) 1157, 1336
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 5 cut(s) 263, 653, 763, 1216, 1240
AcuI CTGAAG 4 cut(s) 155, 779, 1197, 1442
AfaI GTAC 3 cut(s) 290, 536, 589
AflII CTTAAG 1 cut(s) 1472
AflIII ACRYGT 1 cut(s) 1202
AgeI ACCGGT 2 cut(s) 343, 660
AgsI TTSAA 4 cut(s) 658, 679, 898, 1403
AjnI CCWGG 1 cut(s) 855
AloI GAACNNNNNNTCC 4 cut(s) 680, 712, 783, 815
AluBI AGCT 5 cut(s) 420, 521, 529, 799, 1399
AluI AGCT 5 cut(s) 420, 521, 529, 799, 1399
AlwI GGATC 2 cut(s) 1157, 1336
Ama87I CYCGRG 1 cut(s) 1224
AoxI GGCC 5 cut(s) 99, 708, 806, 977, 1034
ApeKI GCWGC 1 cut(s) 968
ApoI RAATTY 5 cut(s) 263, 653, 763, 1216, 1240
AsiGI ACCGGT 2 cut(s) 343, 660
Asp700I GAANNNNTTC 1 cut(s) 1219
AspLEI GCGC 3 cut(s) 95, 225, 247
AspS9I GGNCC 2 cut(s) 99, 1034
AsuHPI GGTGA 6 cut(s) 25, 638, 934, 1064, 1132, 1266
AvaI CYCGRG 1 cut(s) 1224
BalI TGGCCA 1 cut(s) 808
BanII GRGCYC 1 cut(s) 1358
BbsI GAAGAC 1 cut(s) 886
BbvI GCAGC 1 cut(s) 980
BccI CCATC 5 cut(s) 22, 275, 320, 359, 427
BceAI ACGGC 1 cut(s) 1001
BciT130I CCWGG 1 cut(s) 857
BclI TGATCA 1 cut(s) 273
BfaI CTAG 5 cut(s) 69, 477, 504, 1007, 1248
BfoI RGCGCY 1 cut(s) 96
BfrI CTTAAG 1 cut(s) 1472
BisI GCNGC 1 cut(s) 969
BlsI GCNGC 1 cut(s) 970
BmcAI AGTACT 2 cut(s) 536, 589
Bme1390I CCNGG 1 cut(s) 857
BmeT110I CYCGRG 1 cut(s) 1224
BmgT120I GGNCC 2 cut(s) 99, 1034
BmiI GGNNCC 4 cut(s) 100, 204, 339, 869
BmrFI CCNGG 1 cut(s) 857
BmsI GCATC 1 cut(s) 1390
BpiI GAAGAC 1 cut(s) 886
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BpmI CTGGAG 3 cut(s) 551, 785, 1406
BpuEI CTTGAG 1 cut(s) 545
BsaAI YACGTR 1 cut(s) 1445
BsaJI CCNNGG 3 cut(s) 781, 948, 1017
BsaWI WCCGGW 3 cut(s) 343, 660, 864
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bse118I RCCGGY 3 cut(s) 343, 660, 1036
Bse1I ACTGG 3 cut(s) 269, 802, 1198
Bse3DI GCAATG 4 cut(s) 218, 840, 1116, 1486
BseBI CCWGG 1 cut(s) 857
BseDI CCNNGG 3 cut(s) 781, 948, 1017
BseGI GGATG 4 cut(s) 33, 104, 370, 547
BseMI GCAATG 4 cut(s) 218, 840, 1116, 1486
BseMII CTCAG 2 cut(s) 531, 987
BseNI ACTGG 3 cut(s) 269, 802, 1198
BseXI GCAGC 1 cut(s) 980
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 2 cut(s) 247, 1495
Bsh1285I CGRYCG 1 cut(s) 1041
BshFI GGCC 5 cut(s) 101, 710, 808, 979, 1036
BshTI ACCGGT 2 cut(s) 343, 660
BsiEI CGRYCG 1 cut(s) 1041
BsiHKCI CYCGRG 1 cut(s) 1224
BsiSI CCGG 4 cut(s) 344, 661, 865, 1037
BslFI GGGAC 4 cut(s) 382, 492, 508, 725
BsmFI GGGAC 4 cut(s) 382, 492, 508, 725
BsnI GGCC 5 cut(s) 101, 710, 808, 979, 1036
BsoBI CYCGRG 1 cut(s) 1224
Bsp1286I GDGCHC 1 cut(s) 1358
Bsp143I GATC 6 cut(s) 120, 273, 1056, 1162, 1341, 1515
BspANI GGCC 5 cut(s) 101, 710, 808, 979, 1036
BspCNI CTCAG 2 cut(s) 530, 988
BspFNI CGCG 2 cut(s) 247, 1495
BspLI GGNNCC 4 cut(s) 100, 204, 339, 869
BspPI GGATC 2 cut(s) 1157, 1336
BspTI CTTAAG 1 cut(s) 1472
BsrDI GCAATG 4 cut(s) 218, 840, 1116, 1486
BsrFI RCCGGY 3 cut(s) 343, 660, 1036
BsrI ACTGG 3 cut(s) 269, 802, 1198
BssAI RCCGGY 3 cut(s) 343, 660, 1036
BssECI CCNNGG 3 cut(s) 781, 948, 1017
BssMI GATC 6 cut(s) 120, 273, 1056, 1162, 1341, 1515
BssT1I CCWWGG 1 cut(s) 948
Bst2UI CCWGG 1 cut(s) 857
Bst4CI ACNGT 4 cut(s) 89, 592, 961, 975
BstAFI CTTAAG 1 cut(s) 1472
BstBAI YACGTR 1 cut(s) 1445
BstC8I GCNNGC 1 cut(s) 917
BstDEI CTNAG 6 cut(s) 372, 416, 461, 517, 584, 996
BstDSI CCRYGG 1 cut(s) 1017
BstEII GGTNACC 2 cut(s) 31, 74
BstF5I GGATG 4 cut(s) 33, 104, 370, 547
BstFNI CGCG 2 cut(s) 247, 1495
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 3 cut(s) 95, 225, 247
BstKTI GATC 6 cut(s) 123, 276, 1059, 1165, 1344, 1518
BstMBI GATC 6 cut(s) 120, 273, 1056, 1162, 1341, 1515
BstMCI CGRYCG 1 cut(s) 1041
BstMWI GCNNNNNNNGC 2 cut(s) 805, 1492
BstNI CCWGG 1 cut(s) 857
BstNSI RCATGY 1 cut(s) 1206
BstPI GGTNACC 2 cut(s) 31, 74
BstSCI CCNGG 1 cut(s) 855
BstUI CGCG 2 cut(s) 247, 1495
BstV1I GCAGC 1 cut(s) 980
BstV2I GAAGAC 1 cut(s) 886
BstX2I RGATCY 1 cut(s) 1341
BstYI RGATCY 1 cut(s) 1341
BsuRI GGCC 5 cut(s) 101, 710, 808, 979, 1036
BtgI CCRYGG 1 cut(s) 1017
BtsCI GGATG 4 cut(s) 33, 104, 370, 547
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 5 cut(s) 276, 809, 912, 980, 1044
Cac8I GCNNGC 1 cut(s) 917
CfoI GCGC 3 cut(s) 95, 225, 247
Cfr10I RCCGGY 3 cut(s) 343, 660, 1036
Cfr13I GGNCC 2 cut(s) 99, 1034
CseI GACGC 1 cut(s) 1240
Csp6I GTAC 3 cut(s) 289, 535, 588
CspAI ACCGGT 2 cut(s) 343, 660
CviAII CATG 7 cut(s) 487, 1024, 1060, 1115, 1203, 1211, 1351
CviQI GTAC 3 cut(s) 289, 535, 588
DdeI CTNAG 6 cut(s) 372, 416, 461, 517, 584, 996
DpnI GATC 6 cut(s) 122, 275, 1058, 1164, 1343, 1517
DpnII GATC 6 cut(s) 120, 273, 1056, 1162, 1341, 1515
EaeI YGGCCR 1 cut(s) 806
Eco130I CCWWGG 1 cut(s) 948
Eco24I GRGCYC 1 cut(s) 1358
Eco32I GATATC 1 cut(s) 1233
Eco57I CTGAAG 4 cut(s) 155, 779, 1197, 1442
Eco88I CYCGRG 1 cut(s) 1224
Eco91I GGTNACC 2 cut(s) 31, 74
EcoO109I RGGNCCY 1 cut(s) 99
EcoO65I GGTNACC 2 cut(s) 31, 74
EcoRI GAATTC 1 cut(s) 763
EcoRII CCWGG 1 cut(s) 855
EcoRV GATATC 1 cut(s) 1233
EcoT14I CCWWGG 1 cut(s) 948
EcoT22I ATGCAT 1 cut(s) 1116
EcoT38I GRGCYC 1 cut(s) 1358
ErhI CCWWGG 1 cut(s) 948
FaeI CATG 7 cut(s) 490, 1027, 1063, 1118, 1206, 1214, 1354
FaqI GGGAC 4 cut(s) 382, 492, 508, 725
FatI CATG 7 cut(s) 486, 1023, 1059, 1114, 1202, 1210, 1350
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 969
FokI GGATG 4 cut(s) 40, 91, 377, 554
FriOI GRGCYC 1 cut(s) 1358
Fsp4HI GCNGC 1 cut(s) 969
FspBI CTAG 5 cut(s) 69, 477, 504, 1007, 1248
GlaI GCGC 3 cut(s) 94, 224, 246
GluI GCNGC 1 cut(s) 969
GsaI CCCAGC 1 cut(s) 99
GsuI CTGGAG 3 cut(s) 551, 785, 1406
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 5 cut(s) 101, 710, 808, 979, 1036
HapII CCGG 4 cut(s) 344, 661, 865, 1037
HgaI GACGC 1 cut(s) 1240
HhaI GCGC 3 cut(s) 95, 225, 247
Hin1II CATG 7 cut(s) 490, 1027, 1063, 1118, 1206, 1214, 1354
Hin6I GCGC 3 cut(s) 93, 223, 245
HinP1I GCGC 3 cut(s) 93, 223, 245
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 4 cut(s) 500, 545, 891, 1418
HpaI GTTAAC 1 cut(s) 388
HpaII CCGG 4 cut(s) 344, 661, 865, 1037
HphI GGTGA 6 cut(s) 25, 638, 934, 1064, 1132, 1266
Hpy166II GTNNAC 4 cut(s) 388, 699, 835, 1172
Hpy188I TCNGA 5 cut(s) 611, 727, 1150, 1239, 1461
Hpy188III TCNNGA 8 cut(s) 233, 524, 644, 733, 760, 987, 1224, 1385
Hpy8I GTNNAC 4 cut(s) 388, 699, 835, 1172
Hpy99I CGWCG 1 cut(s) 1256
HpyAV CCTTC 8 cut(s) 146, 328, 448, 520, 781, 931, 1155, 1397
HpyCH4III ACNGT 4 cut(s) 89, 592, 961, 975
HpyCH4IV ACGT 2 cut(s) 630, 1444
HpyCH4V TGCA 5 cut(s) 845, 968, 1063, 1114, 1381
HpyF10VI GCNNNNNNNGC 2 cut(s) 805, 1492
HpyF3I CTNAG 6 cut(s) 372, 416, 461, 517, 584, 996
HpySE526I ACGT 2 cut(s) 630, 1444
Hsp92II CATG 7 cut(s) 490, 1027, 1063, 1118, 1206, 1214, 1354
HspAI GCGC 3 cut(s) 93, 223, 245
Ksp22I TGATCA 1 cut(s) 273
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 6 cut(s) 120, 273, 1056, 1162, 1341, 1515
LmnI GCTCC 3 cut(s) 337, 804, 1095
Lsp1109I GCAGC 1 cut(s) 980
LweI GCATC 1 cut(s) 1390
MaeI CTAG 5 cut(s) 69, 477, 504, 1007, 1248
MaeII ACGT 2 cut(s) 630, 1444
MalI GATC 6 cut(s) 122, 275, 1058, 1164, 1343, 1517
MboI GATC 6 cut(s) 120, 273, 1056, 1162, 1341, 1515
MboII GAAGA 4 cut(s) 886, 1212, 1448, 1516
MflI RGATCY 1 cut(s) 1341
MhlI GDGCHC 1 cut(s) 1358
MlsI TGGCCA 1 cut(s) 808
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 2 cut(s) 539, 900
MmeI TCCRAC 3 cut(s) 148, 866, 1350
Mox20I TGGCCA 1 cut(s) 808
Mph1103I ATGCAT 1 cut(s) 1116
MroXI GAANNNNTTC 1 cut(s) 1219
MscI TGGCCA 1 cut(s) 808
MseI TTAA 8 cut(s) 387, 570, 956, 1244, 1292, 1332, 1361, 1473
MslI CAYNNNNRTG 1 cut(s) 1098
Msp20I TGGCCA 1 cut(s) 808
MspCI CTTAAG 1 cut(s) 1472
MspI CCGG 4 cut(s) 344, 661, 865, 1037
MspR9I CCNGG 1 cut(s) 857
MvaI CCWGG 1 cut(s) 857
MvnI CGCG 2 cut(s) 247, 1495
MwoI GCNNNNNNNGC 2 cut(s) 805, 1492
NdeII GATC 6 cut(s) 120, 273, 1056, 1162, 1341, 1515
NlaIII CATG 7 cut(s) 490, 1027, 1063, 1118, 1206, 1214, 1354
NlaIV GGNNCC 4 cut(s) 100, 204, 339, 869
NmeAIII GCCGAG 1 cut(s) 806
NmuCI GTSAC 8 cut(s) 31, 142, 626, 715, 816, 940, 1042, 1266
NsiI ATGCAT 1 cut(s) 1116
NspI RCATGY 1 cut(s) 1206
PaeR7I CTCGAG 1 cut(s) 1224
PciI ACATGT 1 cut(s) 1202
PcsI WCGNNNNNNNCGW 1 cut(s) 1499
PdmI GAANNNNTTC 1 cut(s) 1219
PfeI GAWTC 2 cut(s) 500, 1418
PflMI CCANNNNNTGG 2 cut(s) 361, 1188
PfoI TCCNGGA 1 cut(s) 855
PinAI ACCGGT 2 cut(s) 343, 660
PkrI GCNGC 1 cut(s) 970
PleI GAGTC 2 cut(s) 539, 899
PpsI GAGTC 2 cut(s) 539, 899
Ppu21I YACGTR 1 cut(s) 1445
PscI ACATGT 1 cut(s) 1202
Psp6I CCWGG 1 cut(s) 855
PspEI GGTNACC 2 cut(s) 31, 74
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 855
PspN4I GGNNCC 4 cut(s) 100, 204, 339, 869
PspPI GGNCC 2 cut(s) 99, 1034
PsuI RGATCY 1 cut(s) 1341
RsaI GTAC 3 cut(s) 290, 536, 589
RsaNI GTAC 3 cut(s) 289, 535, 588
RseI CAYNNNNRTG 1 cut(s) 1098
SaqAI TTAA 8 cut(s) 387, 570, 956, 1244, 1292, 1332, 1361, 1473
SatI GCNGC 1 cut(s) 969
Sau3AI GATC 6 cut(s) 120, 273, 1056, 1162, 1341, 1515
Sau96I GGNCC 2 cut(s) 99, 1034
ScaI AGTACT 2 cut(s) 536, 589
SchI GAGTC 2 cut(s) 539, 900
ScrFI CCNGG 1 cut(s) 857
SduI GDGCHC 1 cut(s) 1358
SfaNI GCATC 1 cut(s) 1390
Sfr274I CTCGAG 1 cut(s) 1224
SgrAI CRCCGGYG 1 cut(s) 343
SlaI CTCGAG 1 cut(s) 1224
SmiMI CAYNNNNRTG 1 cut(s) 1098
SmlI CTYRAG 3 cut(s) 524, 1224, 1472
SmoI CTYRAG 3 cut(s) 524, 1224, 1472
SspI AATATT 1 cut(s) 254
SspMI CTAG 5 cut(s) 69, 477, 504, 1007, 1248
StyD4I CCNGG 1 cut(s) 855
StyI CCWWGG 1 cut(s) 948
TaaI ACNGT 4 cut(s) 89, 592, 961, 975
TaiI ACGT 2 cut(s) 633, 1447
TaqI TCGA 3 cut(s) 759, 1104, 1225
TatI WGTACW 2 cut(s) 534, 587
TfiI GAWTC 2 cut(s) 500, 1418
Tru1I TTAA 8 cut(s) 387, 570, 956, 1244, 1292, 1332, 1361, 1473
Tru9I TTAA 8 cut(s) 387, 570, 956, 1244, 1292, 1332, 1361, 1473
TscAI CASTG 5 cut(s) 276, 809, 912, 980, 1051
TseFI GTSAC 8 cut(s) 31, 142, 626, 715, 816, 940, 1042, 1266
TseI GCWGC 1 cut(s) 968
Tsp45I GTSAC 8 cut(s) 31, 142, 626, 715, 816, 940, 1042, 1266
TspDTI ATGAA 3 cut(s) 165, 276, 502
TspRI CASTG 5 cut(s) 276, 809, 912, 980, 1051
Van91I CCANNNNNTGG 2 cut(s) 361, 1188
Vha464I CTTAAG 1 cut(s) 1472
XapI RAATTY 5 cut(s) 263, 653, 763, 1216, 1240
XceI RCATGY 1 cut(s) 1206
XcmI CCANNNNNNNNNTGG 3 cut(s) 362, 1149, 1313
XhoI CTCGAG 1 cut(s) 1224
XmnI GAANNNNTTC 1 cut(s) 1219
XspI CTAG 5 cut(s) 69, 477, 504, 1007, 1248
ZrmI AGTACT 2 cut(s) 536, 589
Zsp2I ATGCAT 1 cut(s) 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.