Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006604

Physical Location & Seq

Genomic Coordinates Reverse (-)

77089886 .. 77093835

Gene Structure 3950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0575400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGATCAGAAACACCTCTCAAACTTCCCACCATAGATTTCTCCATGCAAAACCTCAAGCCAGGCACCACCGAGTGGGACTCAATTAGAGCTCGAGTCCACTTTGCACTCGAAGAGTATGGTTGCTTCGAGGCTTTGTTTAACAAAGTTCCTTCAGATGTTCGAAAAGGCATATTTGAAGCAACAGAAGAGCTTTTCGACCTCCCTTTACAAACCAAATTGCGAAACGTTTCTCAAAAGCCCTTTCATGGCTATGTCGGGCAATACCCCATGGTGCCCCTATATGAGAGCATGGGTATTGAGGAAGCAACCGTCGATGGACAAGTTCAAAGTTTCACAAACATTTTTTGGCCTCAACAAAACCCAAATTTTAGCAAAACTGTTCATTCCTTCTCGGAGAAACTATCTGAGCTGGATCAAATTATAAGGAGAATGATTTTGGAGAGCTTGGGACTTGAGAAATACCTGGAGGAACACATAGGGTCAACAAACTACCTTCTTCGAGTCATGAAATATAAGGGGCCTCAAACCAGCGAGACTAAGCTGGGCTTAAACTCCCACACAGATAAGAACATTGTCACCATTCTGCACCAAAACCAAGTTGAAGGACTAGAGGTGCAAACCAAAGATGGGAAATGGATCAATGTTAAACCTTCGCCGGAGTCATTTATCGCCATGATTGGCGATTCTCTCTATGCATGGACAAATGGTCGACTACATTCTCCACATCATCGAGTGATGATGACCGGAAATGAGGCTAGGTACTCCACTGGATTGTTCTCTATCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAAGAGGTTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATCATGTCGAGTTTCTTGGATTTTACTATTCAGAGGCTGGTCAGAGAGCTCAATCTGCTTTGAAGACTTATTGTGGTGTCCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Malectin_like

Protein Analysis

316

Amino Acids

36.03

Weight (kDa)

5.8

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 87	6.4e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	167 - 261	1.6e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19230
fragaria_vesca	FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120 FvH4_2g06120
malus_domestica	MD05G1080300.v1.1
prunus_persica	Prupe.8G124100_v2.0.a1
pyrus_communis	pycom05g07330
rosa_chinensis	RchiOBHm_Chr6g0257071
rosa_laevigata	RLG00000014675
rosa_multiflora	Rmu_co8457165.1_g000001 Rmu_sc0000659.1_g000006
rosa_roxburghii	Rroxscaffold_7G00208490
rosa_rugosa	Rorug05G0575400
rosa_samantha	Rh6AG093400 Rh6BG084200 Rh6CG080800 Rh6DG076200
rosa_wichuraiana	Rw6G008030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
Acc36I	ACCTGC	1 cut(s)	785
AccB1I	GGYRCC	2 cut(s)	65, 274
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	712
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	3 cut(s)	13, 423, 647
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	764
AfiI	CCNNNNNNNGG	5 cut(s)	75, 248, 630, 794, 820
AgsI	TTSAA	5 cut(s)	179, 329, 605, 853, 925
AhdI	GACNNNNNGTC	1 cut(s)	708
AjnI	CCWGG	2 cut(s)	61, 465
AluBI	AGCT	6 cut(s)	92, 193, 412, 447, 544, 911
AluI	AGCT	6 cut(s)	92, 193, 412, 447, 544, 911
Alw21I	GWGCWC	2 cut(s)	94, 913
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	3 cut(s)	13, 423, 647
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	2 cut(s)	350, 521
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	571
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	279
BanI	GGYRCC	2 cut(s)	65, 274
BanII	GRGCYC	2 cut(s)	94, 913
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	932
Bbv12I	GWGCWC	2 cut(s)	94, 913
BccI	CCATC	2 cut(s)	311, 623
BciT130I	CCWGG	2 cut(s)	63, 467
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	3 cut(s)	611, 759, 949
BfuAI	ACCTGC	1 cut(s)	785
Bme1390I	CCNGG	2 cut(s)	63, 467
BmeRI	GACNNNNNGTC	1 cut(s)	708
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	3 cut(s)	67, 276, 522
BmrFI	CCNGG	2 cut(s)	63, 467
BmsI	GCATC	1 cut(s)	847
BpiI	GAAGAC	1 cut(s)	932
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	488
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	41, 476
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	746
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 248, 630, 794, 820
Bse1I	ACTGG	1 cut(s)	775
BseBI	CCWGG	2 cut(s)	63, 467
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	835, 838
BseLI	CCNNNNNNNGG	5 cut(s)	75, 248, 630, 794, 820
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	775
BseSI	GKGCMC	1 cut(s)	279
BseYI	CCCAGC	1 cut(s)	544
BsgI	GTGCAG	1 cut(s)	572
BshFI	GGCC	2 cut(s)	352, 523
BshNI	GGYRCC	2 cut(s)	65, 274
BsiHKAI	GWGCWC	2 cut(s)	94, 913
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	659, 747
BslFI	GGGAC	2 cut(s)	92, 465
BslI	CCNNNNNNNGG	5 cut(s)	75, 248, 630, 794, 820
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	92, 465
BsnI	GGCC	2 cut(s)	352, 523
BsoBI	CYCGRG	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	94, 279, 913
Bsp143I	GATC	4 cut(s)	5, 415, 639, 862
Bsp19I	CCATGG	1 cut(s)	270
BspANI	GGCC	2 cut(s)	352, 523
BspCNI	CTCAG	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	67, 276, 522
BspMI	ACCTGC	1 cut(s)	785
BspPI	GGATC	3 cut(s)	13, 423, 647
BspQI	GCTCTTC	2 cut(s)	183, 828
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	2 cut(s)	65, 274
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	4 cut(s)	5, 415, 639, 862
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	63, 467
Bst4CI	ACNGT	2 cut(s)	313, 382
Bst6I	CTCTTC	4 cut(s)	108, 183, 813, 828
BstAPI	GCANNNNNTGC	1 cut(s)	844
BstBI	TTCGAA	1 cut(s)	163
BstDEI	CTNAG	2 cut(s)	408, 540
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	835, 838
BstKTI	GATC	4 cut(s)	8, 418, 642, 865
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	4 cut(s)	5, 415, 639, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
BstNI	CCWGG	2 cut(s)	63, 467
BstSCI	CCNGG	2 cut(s)	61, 465
BstSLI	GKGCMC	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	932
BsuRI	GGCC	2 cut(s)	352, 523
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	835, 838
BtsIMutI	CAGTG	1 cut(s)	768
BveI	ACCTGC	1 cut(s)	785
CaiI	CAGNNNCTG	1 cut(s)	899
CciI	TCATGA	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	763
CviAII	CATG	8 cut(s)	46, 248, 271, 292, 508, 676, 699, 866
CviQI	GTAC	1 cut(s)	763
DdeI	CTNAG	2 cut(s)	408, 540
DpnI	GATC	4 cut(s)	7, 417, 641, 864
DpnII	GATC	4 cut(s)	5, 415, 639, 862
DraIII	CACNNNGTG	1 cut(s)	75
DriI	GACNNNNNGTC	1 cut(s)	708
Eam1104I	CTCTTC	4 cut(s)	108, 183, 813, 828
Eam1105I	GACNNNNNGTC	1 cut(s)	708
EarI	CTCTTC	4 cut(s)	108, 183, 813, 828
Ecl136II	GAGCTC	2 cut(s)	92, 911
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	2 cut(s)	94, 913
Eco53kI	GAGCTC	2 cut(s)	92, 911
Eco57I	CTGAAG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	2 cut(s)	92, 911
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	61, 465
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	2 cut(s)	94, 913
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	8 cut(s)	49, 251, 274, 295, 511, 679, 702, 869
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	2 cut(s)	92, 465
FatI	CATG	8 cut(s)	45, 247, 270, 291, 507, 675, 698, 865
FblI	GTMKAC	1 cut(s)	712
FokI	GGATG	2 cut(s)	825, 842
FriOI	GRGCYC	2 cut(s)	94, 913
FspBI	CTAG	3 cut(s)	611, 759, 949
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	352, 523
HapII	CCGG	2 cut(s)	659, 747
Hin1II	CATG	8 cut(s)	49, 251, 274, 295, 511, 679, 702, 869
HincII	GTYRAC	2 cut(s)	486, 713
HindII	GTYRAC	2 cut(s)	486, 713
HinfI	GANTC	5 cut(s)	80, 96, 504, 662, 686
HpaII	CCGG	2 cut(s)	659, 747
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	3 cut(s)	100, 486, 713
Hpy188I	TCNGA	6 cut(s)	10, 157, 397, 409, 895, 906
Hpy188III	TCNNGA	1 cut(s)	508
Hpy8I	GTNNAC	3 cut(s)	100, 486, 713
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	5 cut(s)	162, 400, 506, 599, 663
HpyCH4III	ACNGT	2 cut(s)	313, 382
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	5 cut(s)	49, 107, 589, 619, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
HpyF3I	CTNAG	2 cut(s)	408, 540
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	8 cut(s)	49, 251, 274, 295, 511, 679, 702, 869
Kzo9I	GATC	4 cut(s)	5, 415, 639, 862
LguI	GCTCTTC	2 cut(s)	183, 828
LweI	GCATC	1 cut(s)	847
MaeI	CTAG	3 cut(s)	611, 759, 949
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	577, 797
MalI	GATC	4 cut(s)	7, 417, 641, 864
MboI	GATC	4 cut(s)	5, 415, 639, 862
MboII	GAAGA	6 cut(s)	125, 200, 491, 830, 845, 937
MhlI	GDGCHC	3 cut(s)	94, 279, 913
MluCI	AATT	4 cut(s)	84, 218, 367, 420
MlyI	GAGTC	4 cut(s)	74, 105, 513, 671
Mph1103I	ATGCAT	1 cut(s)	700
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	3 cut(s)	141, 551, 648
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	2 cut(s)	659, 747
MspR9I	CCNGG	2 cut(s)	63, 467
MvaI	CCWGG	2 cut(s)	63, 467
MwoI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	4 cut(s)	5, 415, 639, 862
NlaIII	CATG	8 cut(s)	49, 251, 274, 295, 511, 679, 702, 869
NlaIV	GGNNCC	3 cut(s)	67, 276, 522
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	700
NspV	TTCGAA	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	93
PagI	TCATGA	1 cut(s)	507
PciSI	GCTCTTC	2 cut(s)	183, 828
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	686
PflMI	CCANNNNNTGG	1 cut(s)	75
PleI	GAGTC	4 cut(s)	74, 104, 512, 670
PpsI	GAGTC	4 cut(s)	74, 104, 512, 670
PsiI	TTATAA	1 cut(s)	425
Psp124BI	GAGCTC	2 cut(s)	94, 913
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	61, 465
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	2 cut(s)	61, 465
PspN4I	GGNNCC	3 cut(s)	67, 276, 522
PspPI	GGNCC	1 cut(s)	521
PspXI	VCTCGAGB	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	899
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	2 cut(s)	94, 913
SalI	GTCGAC	1 cut(s)	711
SapI	GCTCTTC	2 cut(s)	183, 828
SaqAI	TTAA	3 cut(s)	141, 551, 648
Sau3AI	GATC	4 cut(s)	5, 415, 639, 862
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	4 cut(s)	74, 105, 513, 671
ScrFI	CCNGG	2 cut(s)	63, 467
SduI	GDGCHC	3 cut(s)	94, 279, 913
SfaNI	GCATC	1 cut(s)	847
Sfr274I	CTCGAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	56, 93, 455
SmoI	CTYRAG	3 cut(s)	56, 93, 455
Sse9I	AATT	4 cut(s)	84, 218, 367, 420
SspMI	CTAG	3 cut(s)	611, 759, 949
SstI	GAGCTC	2 cut(s)	94, 913
StyD4I	CCNGG	2 cut(s)	61, 465
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	313, 382
TaiI	ACGT	1 cut(s)	231
TasI	AATT	4 cut(s)	84, 218, 367, 420
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	3 cut(s)	141, 551, 648
Tru9I	TTAA	3 cut(s)	141, 551, 648
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	1 cut(s)	577
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	4 cut(s)	236, 374, 524, 846
TspRI	CASTG	1 cut(s)	775
Van91I	CCANNNNNTGG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	712
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	3 cut(s)	611, 759, 949
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.