AT3G21351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010887
Physical Location & Seq
Forward (+)
7518784 .. 7519477
694 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21351.1

Sequence Viewer

Length: 219 bp
ATGAAAACCGGGTCAGCAAGGTCTACCATCCTCCTATATGTTTTATTTCTCGCACTGGTCTTGTCTCCAACACTTCCATGTCAAGCAGCTAGTGTCCCTCTAGGAGGGCGTAAGATGATGGCGCCACCACCACCTATTCTCATGTGTACACAGTGTGCATGTTGTGCACCGGCTCCACCCGGTTCTTGCTGCCGTTGTGGCTGTTCTGGTGGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.27

Weight (kDa)

8.87

Isoelectric Point (pI)

73.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 122
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 104
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 69
Alw44I GTGCAC 1 cut(s) 165
ApaLI GTGCAC 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 86, 189
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 212
AsuC2I CCSGG 2 cut(s) 10, 180
AvaII GGWCC 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 98, 176
BccI CCATC 2 cut(s) 35, 112
BceAI ACGGC 1 cut(s) 177
BcnI CCSGG 2 cut(s) 10, 180
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 90, 101
BfoI RGCGCY 1 cut(s) 125
BglI GCCNNNNNGGC 1 cut(s) 198
BisI GCNGC 2 cut(s) 87, 190
BlsI GCNGC 2 cut(s) 88, 191
Bme1390I CCNGG 2 cut(s) 10, 180
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 3 cut(s) 123, 174, 214
BmrFI CCNGG 2 cut(s) 10, 180
BpuMI CCSGG 2 cut(s) 10, 180
BsaHI GRCGYC 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 2 cut(s) 98, 176
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 3 cut(s) 9, 170, 180
BslFI GGGAC 2 cut(s) 80, 198
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 2 cut(s) 80, 198
Bsp1286I GDGCHC 1 cut(s) 169
Bsp1407I TGTACA 1 cut(s) 146
BspLI GGNNCC 3 cut(s) 123, 174, 214
BspT107I GGYRCC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 169
BsrGI TGTACA 1 cut(s) 146
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 169
BssNI GRCGYC 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 122
BstAPI GCANNNNNTGC 1 cut(s) 164
BstAUI TGTACA 1 cut(s) 146
BstENI CCTNNNNNAGG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 69
BstMWI GCNNNNNNNGC 2 cut(s) 164, 198
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 8, 178
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 98, 176
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 53, 158
CfoI GCGC 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 147
CviAII CATG 3 cut(s) 78, 142, 159
CviJI RGCY 3 cut(s) 89, 173, 201
CviKI_1 RGCY 3 cut(s) 89, 173, 201
CviQI GTAC 1 cut(s) 147
DinI GGCGCC 1 cut(s) 123
DraIII CACNNNGTG 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
FaeI CATG 3 cut(s) 81, 145, 162
FaiI YATR 5 cut(s) 37, 39, 79, 143, 160
FaqI GGGAC 2 cut(s) 80, 198
FatI CATG 3 cut(s) 77, 141, 158
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 2 cut(s) 87, 190
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 2 cut(s) 87, 190
FspBI CTAG 2 cut(s) 90, 101
GlaI GCGC 1 cut(s) 123
GluI GCNGC 2 cut(s) 87, 190
HaeII RGCGCY 1 cut(s) 125
HapII CCGG 3 cut(s) 9, 170, 180
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 3 cut(s) 81, 145, 162
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HpaII CCGG 3 cut(s) 9, 170, 180
Hpy166II GTNNAC 4 cut(s) 24, 147, 149, 167
Hpy8I GTNNAC 4 cut(s) 24, 147, 149, 167
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 158, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 198
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 3 cut(s) 81, 145, 162
HspAI GCGC 1 cut(s) 122
KasI GGCGCC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 5 cut(s) 22, 41, 183, 192, 193
Lsp1109I GCAGC 2 cut(s) 98, 176
MaeI CTAG 2 cut(s) 90, 101
MhlI GDGCHC 1 cut(s) 169
Mly113I GGCGCC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 3 cut(s) 41, 98, 108
MslI CAYNNNNRTG 1 cut(s) 76
MspI CCGG 3 cut(s) 9, 170, 180
MspR9I CCNGG 2 cut(s) 10, 180
MwoI GCNNNNNNNGC 2 cut(s) 164, 198
NarI GGCGCC 1 cut(s) 122
NciI CCSGG 2 cut(s) 10, 180
NlaIII CATG 3 cut(s) 81, 145, 162
NlaIV GGNNCC 3 cut(s) 123, 174, 214
NspI RCATGY 1 cut(s) 162
PkrI GCNGC 2 cut(s) 88, 191
PluTI GGCGCC 1 cut(s) 125
PspN4I GGNNCC 3 cut(s) 123, 174, 214
PspPI GGNCC 1 cut(s) 212
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 76
SatI GCNGC 2 cut(s) 87, 190
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 10, 180
SduI GDGCHC 1 cut(s) 169
SetI ASST 3 cut(s) 23, 91, 136
SfoI GGCGCC 1 cut(s) 123
SinI GGWCC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 76
SspDI GGCGCC 1 cut(s) 121
SspMI CTAG 2 cut(s) 90, 101
StyD4I CCNGG 2 cut(s) 8, 178
TaaI ACNGT 1 cut(s) 153
TatI WGTACW 1 cut(s) 146
TscAI CASTG 2 cut(s) 60, 158
TseI GCWGC 2 cut(s) 86, 189
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 60, 158
VneI GTGCAC 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 212
XagI CCTNNNNNAGG 1 cut(s) 102
XceI RCATGY 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 2 cut(s) 90, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.