Rh2AG420000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010887
Physical Location & Seq
Reverse (-)
62406840 .. 62407799
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG420000.1

Sequence Viewer

Length: 396 bp
ATGTCAAAGTATACATGTTGCCGCAAAGTGGAAAATCAACCTTCCCATTCAAACAACGCCTTCGACCCGTCATCTTTCATTCAAACAATGACCTATATATATATATATATATGTCCTGGCTTGGTCTATTATCCTTACCATCACAGCAAGTTTGCTAGCAAGAATTTTGTTAGACAAGAAATGTCAGGGGGTTCTATGAGATTTGCTCTGGTGACTCTGTTCATCTTCGCAATGGTTCTGTCTCCGATTACAACATCCGAGGCTGCACGGTTCACGTTTCTAGATACAACTCCCATATGTCCTGCTTGTGTTTGCTGCGCACCTGCACCACCCGGCTCTTGCTGCGATTGTTGTGCCACACCGATTGAAACTCAGTCCGAGCAAGGGTCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.47

Weight (kDa)

6.77

Isoelectric Point (pI)

59.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc16I TGCGCA 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 11
AciI CCGC 1 cut(s) 22
AcsI RAATTY 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 28, 384
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 3 cut(s) 51, 83, 368
AjnI CCWGG 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 246
ApeKI GCWGC 3 cut(s) 263, 315, 342
ApoI RAATTY 1 cut(s) 163
AspLEI GCGC 1 cut(s) 320
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 223
AsuNHI GCTAGC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 250, 302, 329
BccI CCATC 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 2 cut(s) 156, 281
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 4 cut(s) 22, 264, 316, 343
BlsI GCNGC 4 cut(s) 23, 265, 317, 344
Bme1390I CCNGG 2 cut(s) 117, 333
BmrFI CCNGG 2 cut(s) 117, 333
BmtI GCTAGC 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 190, 222
BpuMI CCSGG 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 384
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 28, 384
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 386
BseXI GCAGC 3 cut(s) 250, 302, 329
BsgI GTGCAG 2 cut(s) 249, 309
BsiSI CCGG 1 cut(s) 333
BslI CCNNNNNNNGG 2 cut(s) 28, 384
BsmAI GTCTC 1 cut(s) 246
BspACI CCGC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 385
BspMI ACCTGC 1 cut(s) 331
BspOI GCTAGC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 258
BssNAI GTATAC 1 cut(s) 12
Bst1107I GTATAC 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 320
BstMAI GTCTC 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 115, 331
BstV1I GCAGC 3 cut(s) 250, 302, 329
BstZ17I GTATAC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 254
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 320
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 2 cut(s) 15, 393
CviJI RGCY 3 cut(s) 120, 263, 336
CviKI_1 RGCY 3 cut(s) 120, 263, 336
DdeI CTNAG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 2 cut(s) 18, 396
FatI CATG 2 cut(s) 14, 392
FauNDI CATATG 1 cut(s) 296
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 4 cut(s) 22, 264, 316, 343
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 4 cut(s) 22, 264, 316, 343
FspBI CTAG 2 cut(s) 156, 281
FspI TGCGCA 1 cut(s) 319
GlaI GCGC 1 cut(s) 319
GluI GCNGC 4 cut(s) 22, 264, 316, 343
HapII CCGG 1 cut(s) 333
HhaI GCGC 1 cut(s) 320
Hin1II CATG 2 cut(s) 18, 396
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 12, 273
Hpy188I TCNGA 3 cut(s) 246, 259, 379
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 2 cut(s) 12, 273
HpyAV CCTTC 2 cut(s) 51, 70
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 2 cut(s) 266, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 1 cut(s) 372
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 2 cut(s) 18, 396
HspAI GCGC 1 cut(s) 318
LpnPI CCDG 7 cut(s) 102, 129, 171, 194, 315, 336, 346
Lsp1109I GCAGC 3 cut(s) 250, 302, 329
MaeI CTAG 2 cut(s) 156, 281
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 211
MboII GAAGA 1 cut(s) 217
MluCI AATT 1 cut(s) 163
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 1 cut(s) 253
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 2 cut(s) 117, 333
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 342
NciI CCSGG 1 cut(s) 333
NdeI CATATG 1 cut(s) 296
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 2 cut(s) 18, 396
NmuCI GTSAC 1 cut(s) 211
NsbI TGCGCA 1 cut(s) 319
NspI RCATGY 1 cut(s) 18
PaqCI CACCTGC 1 cut(s) 331
PciI ACATGT 1 cut(s) 14
PkrI GCNGC 4 cut(s) 23, 265, 317, 344
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
SatI GCNGC 4 cut(s) 22, 264, 316, 343
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 117, 333
SetI ASST 4 cut(s) 43, 95, 278, 325
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 22
SspMI CTAG 2 cut(s) 156, 281
StyD4I CCNGG 2 cut(s) 115, 331
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 63
TasI AATT 1 cut(s) 163
TauI GCSGC 1 cut(s) 24
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 3 cut(s) 263, 315, 342
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 67, 211
XapI RAATTY 1 cut(s) 163
XbaI TCTAGA 1 cut(s) 280
XceI RCATGY 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 2 cut(s) 156, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.