Rroxscaffold_2G00103920

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
26936352 .. 26936805
454 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00103920.1

Sequence Viewer

Length: 216 bp
ATGTCACGGGGTTCTATGAGGTTTGCTCTGGTGACTCTGTTCATCTTCGCAATGGTTCTGTCTCCGATTACAACATCCGAGGCTGCACGGTTCACGTTTCTAGATACAACTCCCATATGTCCTGCTTGTGTTTGCTGCGCACCTGCACCACCGGGCTCTTGCTGCGATTGTTGTGCCACACCGATTGAAACTCAGTCCGAGCAAGGGTCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.45

Weight (kDa)

4.51

Isoelectric Point (pI)

75.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 151
Acc16I TGCGCA 1 cut(s) 139
Acc36I ACCTGC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 66
ApeKI GCWGC 3 cut(s) 83, 135, 162
AspLEI GCGC 1 cut(s) 140
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 43
BanII GRGCYC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 70, 122, 149
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 3 cut(s) 84, 136, 163
BlsI GCNGC 3 cut(s) 85, 137, 164
Bme1390I CCNGG 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpuMI CCSGG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 206
BseXI GCAGC 3 cut(s) 70, 122, 149
BsgI GTGCAG 2 cut(s) 69, 129
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 140
BstMAI GTCTC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 3 cut(s) 70, 122, 149
BtsCI GGATG 1 cut(s) 74
BveI ACCTGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 140
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 1 cut(s) 213
CviJI RGCY 2 cut(s) 83, 156
CviKI_1 RGCY 2 cut(s) 83, 156
DdeI CTNAG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 158
FaeI CATG 1 cut(s) 216
FaiI YATR 4 cut(s) 17, 116, 118, 214
FatI CATG 1 cut(s) 212
FauNDI CATATG 1 cut(s) 116
Fnu4HI GCNGC 3 cut(s) 84, 136, 163
FokI GGATG 1 cut(s) 61
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 84, 136, 163
FspBI CTAG 1 cut(s) 101
FspI TGCGCA 1 cut(s) 139
GlaI GCGC 1 cut(s) 139
GluI GCNGC 3 cut(s) 84, 136, 163
HapII CCGG 1 cut(s) 152
HhaI GCGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 216
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 34
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 3 cut(s) 66, 79, 199
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 86, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 1 cut(s) 216
HspAI GCGC 1 cut(s) 138
LpnPI CCDG 4 cut(s) 14, 135, 156, 165
Lsp1109I GCAGC 3 cut(s) 70, 122, 149
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 3, 31
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 158
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 2 cut(s) 12, 73
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 153
NdeI CATATG 1 cut(s) 116
NlaIII CATG 1 cut(s) 216
NmuCI GTSAC 2 cut(s) 3, 31
NsbI TGCGCA 1 cut(s) 139
PaqCI CACCTGC 1 cut(s) 151
PkrI GCNGC 3 cut(s) 85, 137, 164
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
SatI GCNGC 3 cut(s) 84, 136, 163
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 158
SetI ASST 3 cut(s) 23, 98, 145
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 1 cut(s) 98
TseFI GTSAC 2 cut(s) 3, 31
TseI GCWGC 3 cut(s) 83, 135, 162
Tsp45I GTSAC 2 cut(s) 3, 31
TspDTI ATGAA 1 cut(s) 31
XbaI TCTAGA 1 cut(s) 100
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.