MD17G1179900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010887
Physical Location & Seq
Forward (+)
20892363 .. 20893013
651 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1179900.v1.1.491

Sequence Viewer

Length: 216 bp
ATGACAGGTGGCTCTATGAGGTCTGCTTTGGTGACCCTCTTCATCTTTGCCATCGTACTCTCTCCGATTTCAACCCCAGAGGCAGCTCGATTCGTTTTTCTAGATACAACTCCTATATGTCCAGCTTGTGTATGCTGCGCACCGGCACCACAAGGCTCTTGTTGCGATTGTTGTGCTACACCAATTGAAACTCAGTCCCAGGAAGGGTCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.31

Weight (kDa)

4.18

Isoelectric Point (pI)

70.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 145
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 2 cut(s) 72, 188
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 2 cut(s) 86, 125
AluI AGCT 2 cut(s) 86, 125
ApeKI GCWGC 2 cut(s) 83, 135
AspLEI GCGC 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 43, 201
BanI GGYRCC 1 cut(s) 145
BbvI GCAGC 2 cut(s) 95, 122
BccI CCATC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 200
BfaI CTAG 1 cut(s) 101
BisI GCNGC 2 cut(s) 84, 136
BlsI GCNGC 2 cut(s) 85, 137
Bme1390I CCNGG 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 142
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 95, 122
BshNI GGYRCC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 192
BstEII GGTNACC 2 cut(s) 31, 207
BstHHI GCGC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 200
BstPI GGTNACC 2 cut(s) 31, 207
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 95, 122
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 142
Csp6I GTAC 1 cut(s) 56
CviAII CATG 1 cut(s) 213
CviJI RGCY 4 cut(s) 12, 86, 125, 156
CviKI_1 RGCY 4 cut(s) 12, 86, 125, 156
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco91I GGTNACC 2 cut(s) 31, 207
EcoO65I GGTNACC 2 cut(s) 31, 207
EcoRII CCWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 216
FaiI YATR 5 cut(s) 17, 116, 118, 133, 214
FaqI GGGAC 1 cut(s) 181
FatI CATG 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 84, 136
Fsp4HI GCNGC 2 cut(s) 84, 136
FspBI CTAG 1 cut(s) 101
FspI TGCGCA 1 cut(s) 139
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 84, 136
HapII CCGG 1 cut(s) 143
HhaI GCGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 216
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 143
HphI GGTGA 2 cut(s) 43, 201
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 1 cut(s) 216
HspAI GCGC 1 cut(s) 138
LpnPI CCDG 5 cut(s) 90, 135, 156, 185, 212
Lsp1109I GCAGC 2 cut(s) 95, 122
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 31, 207
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 183
MluCI AATT 1 cut(s) 183
MnlI CCTC 3 cut(s) 12, 47, 73
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 162
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 2 cut(s) 31, 207
NsbI TGCGCA 1 cut(s) 139
PfeI GAWTC 1 cut(s) 90
PkrI GCNGC 2 cut(s) 85, 137
Psp6I CCWGG 1 cut(s) 198
PspEI GGTNACC 2 cut(s) 31, 207
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 147
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SatI GCNGC 2 cut(s) 84, 136
ScrFI CCNGG 1 cut(s) 200
SetI ASST 4 cut(s) 10, 23, 88, 127
Sse9I AATT 1 cut(s) 183
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 198
TaqI TCGA 1 cut(s) 88
TasI AATT 1 cut(s) 183
TfiI GAWTC 1 cut(s) 90
TseFI GTSAC 2 cut(s) 31, 207
TseI GCWGC 2 cut(s) 83, 135
Tsp45I GTSAC 2 cut(s) 31, 207
TspDTI ATGAA 1 cut(s) 31
XbaI TCTAGA 1 cut(s) 100
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.