AT3G21352

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010887
Physical Location & Seq
Forward (+)
7519865 .. 7520549
685 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21352.1

Sequence Viewer

Length: 225 bp
ATGAAAACCGGGTCAGCAAAATCCAACATCCTCCTATATGTTTTTGTTCTCTCACTTGTCTTGTCTCCAATACTTCCATGTCAAGCCGCTAGTGTGCTTCTAGGAGGTGGAGGGCGTAAGCTGATGGCGCCGTCACCACCAATTCGCATGTGTCCACAGTGTGTATGTTGTGCACCGGCTCCACCTGATTCTTGCTGCCCATGTCGTTGTCCAGGCGGCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.52

Weight (kDa)

8.85

Isoelectric Point (pI)

69.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 127, 218
AciI CCGC 2 cut(s) 87, 216
AcyI GRCGYC 2 cut(s) 128, 219
AdeI CACNNNGTG 1 cut(s) 161
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 69
Alw44I GTGCAC 1 cut(s) 171
ApaLI GTGCAC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 130, 221
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 126
BaeGI GKGCMC 1 cut(s) 175
BanI GGYRCC 2 cut(s) 127, 218
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 213
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 90, 101
BfoI RGCGCY 2 cut(s) 131, 222
BisI GCNGC 3 cut(s) 87, 196, 217
BlsI GCNGC 3 cut(s) 88, 197, 218
Bme1390I CCNGG 2 cut(s) 10, 213
BmiI GGNNCC 3 cut(s) 129, 180, 220
BmrFI CCNGG 2 cut(s) 10, 213
BpuMI CCSGG 1 cut(s) 10
BsaHI GRCGYC 2 cut(s) 128, 219
Bse118I RCCGGY 1 cut(s) 175
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 1 cut(s) 182
BshNI GGYRCC 2 cut(s) 127, 218
BsiHKAI GWGCWC 1 cut(s) 175
BsiSI CCGG 2 cut(s) 9, 176
BsmAI GTCTC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 175
BspACI CCGC 2 cut(s) 87, 216
BspLI GGNNCC 3 cut(s) 129, 180, 220
BspT107I GGYRCC 2 cut(s) 127, 218
BsrFI RCCGGY 1 cut(s) 175
BssAI RCCGGY 1 cut(s) 175
BssNI GRCGYC 2 cut(s) 128, 219
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 159
BstACI GRCGYC 2 cut(s) 128, 219
BstF5I GGATG 1 cut(s) 27
BstH2I RGCGCY 2 cut(s) 131, 222
BstHHI GCGC 2 cut(s) 130, 221
BstMAI GTCTC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 8, 211
BstSLI GKGCMC 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 164
CfoI GCGC 2 cut(s) 130, 221
Cfr10I RCCGGY 1 cut(s) 175
CviAII CATG 3 cut(s) 78, 148, 201
CviJI RGCY 3 cut(s) 86, 121, 179
CviKI_1 RGCY 3 cut(s) 86, 121, 179
DinI GGCGCC 2 cut(s) 129, 220
DraIII CACNNNGTG 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 211
EgeI GGCGCC 2 cut(s) 129, 220
EheI GGCGCC 2 cut(s) 129, 220
FaeI CATG 3 cut(s) 81, 151, 204
FaiI YATR 6 cut(s) 37, 39, 79, 149, 166, 202
FatI CATG 3 cut(s) 77, 147, 200
Fnu4HI GCNGC 3 cut(s) 87, 196, 217
FokI GGATG 1 cut(s) 14
Fsp4HI GCNGC 3 cut(s) 87, 196, 217
FspBI CTAG 2 cut(s) 90, 101
GlaI GCGC 2 cut(s) 129, 220
GluI GCNGC 3 cut(s) 87, 196, 217
HaeII RGCGCY 2 cut(s) 131, 222
HapII CCGG 2 cut(s) 9, 176
HhaI GCGC 2 cut(s) 130, 221
Hin1I GRCGYC 2 cut(s) 128, 219
Hin1II CATG 3 cut(s) 81, 151, 204
Hin6I GCGC 2 cut(s) 128, 219
HinP1I GCGC 2 cut(s) 128, 219
HinfI GANTC 1 cut(s) 188
HpaII CCGG 2 cut(s) 9, 176
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 2 cut(s) 155, 173
Hpy8I GTNNAC 2 cut(s) 155, 173
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
Hsp92I GRCGYC 2 cut(s) 128, 219
Hsp92II CATG 3 cut(s) 81, 151, 204
HspAI GCGC 2 cut(s) 128, 219
KasI GGCGCC 2 cut(s) 127, 218
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 4 cut(s) 22, 189, 198, 198
Lsp1109I GCAGC 1 cut(s) 182
MaeI CTAG 2 cut(s) 90, 101
MaeIII GTNAC 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 1 cut(s) 141
Mly113I GGCGCC 2 cut(s) 128, 219
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 3 cut(s) 41, 98, 104
MspI CCGG 2 cut(s) 9, 176
MspR9I CCNGG 2 cut(s) 10, 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 127
NarI GGCGCC 2 cut(s) 128, 219
NciI CCSGG 1 cut(s) 10
NlaIII CATG 3 cut(s) 81, 151, 204
NlaIV GGNNCC 3 cut(s) 129, 180, 220
NmuCI GTSAC 1 cut(s) 132
NspI RCATGY 1 cut(s) 151
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 3 cut(s) 88, 197, 218
PluTI GGCGCC 2 cut(s) 131, 222
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 3 cut(s) 129, 180, 220
SatI GCNGC 3 cut(s) 87, 196, 217
ScrFI CCNGG 2 cut(s) 10, 213
SduI GDGCHC 1 cut(s) 175
SetI ASST 3 cut(s) 109, 123, 187
SfoI GGCGCC 2 cut(s) 129, 220
Sse9I AATT 1 cut(s) 141
SsiI CCGC 2 cut(s) 87, 216
SspDI GGCGCC 2 cut(s) 127, 218
SspMI CTAG 2 cut(s) 90, 101
StyD4I CCNGG 2 cut(s) 8, 211
TaaI ACNGT 1 cut(s) 159
TasI AATT 1 cut(s) 141
TauI GCSGC 2 cut(s) 89, 219
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 1 cut(s) 164
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 164
VneI GTGCAC 1 cut(s) 171
XceI RCATGY 1 cut(s) 151
XspI CTAG 2 cut(s) 90, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.